Wall clock time and date at job start Tue Mar 31 2020 02:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48500 * 109.46792 * 355.35341 * 3 2 1 5 5 H 1.48492 * 109.47231 * 235.35758 * 3 2 1 6 6 H 1.48498 * 109.47203 * 115.35067 * 3 2 1 7 7 C 1.38817 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00020 * 352.35285 * 7 2 1 9 9 N 1.36936 * 120.00069 * 172.36313 * 7 2 1 10 10 C 1.47277 * 135.93235 * 6.40623 * 9 7 2 11 11 C 1.52625 * 87.60970 * 153.90599 * 10 9 7 12 12 C 1.47276 * 135.93941 * 186.78410 * 9 7 2 13 13 C 1.53883 * 115.57898 * 141.35408 * 11 10 9 14 14 C 1.55506 * 100.75842 * 166.92639 * 13 11 10 15 15 C 1.54478 * 102.38774 * 327.02991 * 14 13 11 16 16 H 1.08989 * 109.83027 * 261.85608 * 15 14 13 17 17 C 1.52995 * 109.82919 * 140.87188 * 15 14 13 18 18 N 1.46498 * 109.46870 * 180.42178 * 17 15 14 19 19 C 1.34782 * 120.00161 * 180.02562 * 18 17 15 20 20 O 1.21281 * 119.99768 * 0.02562 * 19 18 17 21 21 C 1.50693 * 120.00313 * 180.02562 * 19 18 17 22 22 C 1.52995 * 117.50299 * 248.74501 * 21 19 18 23 23 C 1.53004 * 117.50215 * 180.08180 * 21 19 18 24 24 O 1.42407 * 116.98580 * 268.27091 * 11 10 9 25 25 H 0.96995 * 120.00022 * 184.92214 * 1 2 3 26 26 H 1.09006 * 113.51737 * 268.56865 * 10 9 7 27 27 H 1.08998 * 113.51798 * 39.15374 * 10 9 7 28 28 H 1.08997 * 113.50694 * 320.84973 * 12 9 7 29 29 H 1.08997 * 113.50949 * 91.36119 * 12 9 7 30 30 H 1.08998 * 111.16268 * 284.80492 * 13 11 10 31 31 H 1.09004 * 111.16024 * 49.05769 * 13 11 10 32 32 H 1.09000 * 110.82653 * 208.80701 * 14 13 11 33 33 H 1.08997 * 110.99064 * 85.33099 * 14 13 11 34 34 H 1.08997 * 109.48044 * 300.42955 * 17 15 14 35 35 H 1.09000 * 109.47235 * 60.42743 * 17 15 14 36 36 H 0.96997 * 120.00521 * 0.02562 * 18 17 15 37 37 H 1.09006 * 115.54983 * 34.41958 * 21 19 18 38 38 H 1.09005 * 117.49487 * 0.02562 * 22 21 19 39 39 H 1.09003 * 117.50432 * 145.01602 * 22 21 19 40 40 H 1.08990 * 117.50506 * 214.97921 * 23 21 19 41 41 H 1.09001 * 117.49613 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2894 2.7441 -0.1134 5 1 3.1871 1.6483 -1.1518 6 1 3.0170 1.7465 1.2652 7 6 2.0102 -1.2022 -0.0005 8 1 1.4773 -2.1334 0.1235 9 7 3.3704 -1.2075 -0.1581 10 6 4.4309 -0.1884 -0.2338 11 6 5.3993 -1.2498 0.2811 12 6 4.4116 -2.2344 -0.3327 13 6 6.8024 -1.2315 -0.3506 14 6 7.5722 -2.1662 0.6252 15 6 6.8804 -1.8773 1.9759 16 1 7.4708 -1.1617 2.5480 17 6 6.7259 -3.1769 2.7683 18 7 6.0604 -2.8955 4.0427 19 6 5.8170 -3.8968 4.9114 20 8 6.1495 -5.0307 4.6383 21 6 5.1319 -3.6075 6.2221 22 6 5.9617 -3.7497 7.4996 23 6 4.8858 -4.7862 7.1660 24 8 5.5868 -1.3239 1.6908 25 1 -0.4850 -0.8369 0.0721 26 1 4.6465 0.1403 -1.2505 27 1 4.2862 0.6421 0.4571 28 1 4.2504 -3.1247 0.2751 29 1 4.6209 -2.4683 -1.3765 30 1 6.7852 -1.6441 -1.3593 31 1 7.2229 -0.2259 -0.3460 32 1 8.6281 -1.8990 0.6657 33 1 7.4493 -3.2118 0.3428 34 1 6.1271 -3.8837 2.1940 35 1 7.7098 -3.6053 2.9591 36 1 5.7948 -1.9885 4.2613 37 1 4.3801 -2.8186 6.1955 38 1 7.0034 -4.0522 7.3919 39 1 5.7558 -3.0547 8.3136 40 1 3.9725 -4.7727 7.7606 41 1 5.2190 -5.7711 6.8387 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053556644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:02 Heat of formation + Delta-G solvation = 10.211639 kcal Electronic energy + Delta-G solvation = -22379.606327 eV Core-core repulsion = 19069.693405 eV Total energy + Delta-G solvation = -3309.912921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43419 -39.75593 -37.06754 -36.17791 -34.44758 -32.37027 -32.08797 -29.72562 -27.24822 -25.55269 -24.86560 -23.05437 -22.59135 -21.57674 -21.06359 -19.97404 -19.31030 -17.55212 -17.41762 -16.73646 -16.06248 -15.84098 -15.36530 -14.91181 -14.53312 -14.23183 -14.00730 -13.75317 -13.25463 -13.13190 -12.97893 -12.63459 -12.53799 -12.17238 -11.74952 -11.73166 -11.62151 -11.41773 -10.83969 -10.79275 -10.65144 -10.60086 -10.47935 -10.36100 -9.86024 -9.53726 -9.18668 -9.06089 -8.85141 -8.82451 -7.11348 -6.28131 -3.17543 2.47519 3.08720 3.41337 3.47068 3.66065 3.70532 3.83249 4.43970 4.58040 4.61253 4.62453 4.68819 4.72601 4.74120 4.89519 4.97484 5.06762 5.13536 5.33551 5.38239 5.45564 5.51696 5.54869 5.62950 5.70037 5.76894 5.86966 5.94306 5.94854 6.05707 6.16898 6.21269 6.30298 6.40077 6.41605 6.52659 7.13334 7.43827 7.51868 8.22954 8.27487 9.01726 9.54114 10.39466 11.24895 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.005002 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.368267 B = 5596.581268 C = 6662.798076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.026 4.026 3 Si 1.072 2.928 4 H -0.295 1.295 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.299 4.299 8 H 0.082 0.918 9 N -0.621 5.621 10 C 0.105 3.895 11 C 0.070 3.930 12 C 0.110 3.890 13 C -0.139 4.139 14 C -0.144 4.144 15 C 0.064 3.936 16 H 0.085 0.915 17 C 0.113 3.887 18 N -0.715 5.715 19 C 0.543 3.457 20 O -0.549 6.549 21 C -0.194 4.194 22 C -0.154 4.154 23 C -0.148 4.148 24 O -0.333 6.333 25 H 0.260 0.740 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.407 0.593 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.290 -3.743 8.683 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.224 4.224 3 Si 0.905 3.095 4 H -0.223 1.223 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.425 4.425 8 H 0.099 0.901 9 N -0.349 5.349 10 C -0.021 4.021 11 C 0.029 3.971 12 C -0.017 4.017 13 C -0.177 4.177 14 C -0.182 4.182 15 C 0.005 3.995 16 H 0.103 0.897 17 C -0.011 4.011 18 N -0.366 5.366 19 C 0.330 3.670 20 O -0.428 6.428 21 C -0.216 4.216 22 C -0.191 4.191 23 C -0.185 4.185 24 O -0.251 6.251 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.242 0.758 37 H 0.144 0.856 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.889 -2.855 8.589 20.048 hybrid contribution 0.069 -1.304 -0.082 1.308 sum 17.958 -4.159 8.507 20.301 Atomic orbital electron populations 1.70917 1.05305 1.29354 1.52341 1.25715 0.96443 1.00905 0.99355 0.83682 0.73739 0.75935 0.76186 1.22293 1.21492 1.22044 1.20116 0.78471 0.95804 1.48156 0.90076 1.45880 1.02134 1.01380 1.85483 1.22828 0.86938 0.94043 0.98252 1.23178 0.92904 0.99797 0.81218 1.22692 0.87608 0.94042 0.97335 1.23002 0.94830 1.00239 0.99648 1.23067 1.00075 1.01253 0.93795 1.23087 0.86017 0.94033 0.96313 0.89748 1.21790 0.97747 0.97276 0.84257 1.45776 1.60914 1.11487 1.18408 1.19635 0.78228 0.84615 0.84570 1.90672 1.52915 1.21621 1.77546 1.22218 1.04671 1.04717 0.89951 1.22930 0.97401 1.02683 0.96107 1.22948 1.00455 0.94802 1.00321 1.88363 1.32704 1.82449 1.21579 0.93005 0.92386 0.92358 0.93385 0.93571 0.89504 0.90131 0.89974 0.90087 0.90919 0.90776 0.75797 0.85592 0.88411 0.87817 0.87899 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.20 13.70 55.49 0.76 -29.44 16 2 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 3 Si 1.07 27.32 25.14 -169.99 -4.27 23.04 16 4 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 5 H -0.29 -6.72 6.10 56.52 0.34 -6.37 16 6 H -0.29 -7.15 6.63 56.52 0.37 -6.77 16 7 C -0.30 -8.93 11.08 -15.06 -0.17 -9.10 16 8 H 0.08 2.57 8.05 -52.49 -0.42 2.14 16 9 N -0.62 -15.79 3.70 -184.81 -0.68 -16.48 16 10 C 0.10 2.24 5.26 -7.75 -0.04 2.20 16 11 C 0.07 1.22 1.56 -90.68 -0.14 1.08 16 12 C 0.11 2.23 8.24 -7.87 -0.06 2.17 16 13 C -0.14 -1.70 6.49 -24.94 -0.16 -1.86 16 14 C -0.14 -1.47 6.56 -24.62 -0.16 -1.63 16 15 C 0.06 0.78 3.62 -25.96 -0.09 0.69 16 16 H 0.08 0.88 8.14 -51.94 -0.42 0.46 16 17 C 0.11 1.45 5.23 -4.04 -0.02 1.43 16 18 N -0.72 -9.42 5.47 -60.30 -0.33 -9.75 16 19 C 0.54 7.77 7.61 -10.99 -0.08 7.69 16 20 O -0.55 -9.66 16.26 5.56 0.09 -9.57 16 21 C -0.19 -2.18 6.19 -91.78 -0.57 -2.75 16 22 C -0.15 -1.36 10.24 -26.70 -0.27 -1.63 16 23 C -0.15 -1.49 10.05 -26.69 -0.27 -1.76 16 24 O -0.33 -5.77 10.69 -35.23 -0.38 -6.14 16 25 H 0.26 8.30 8.73 -40.82 -0.36 7.94 16 26 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 27 H 0.06 1.32 4.72 -51.93 -0.25 1.07 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.86 7.99 -51.93 -0.41 0.45 16 30 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.41 4.88 8.40 -40.82 -0.34 4.53 16 37 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 1.22 7.67 -51.93 -0.40 0.82 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -36.09 332.84 -8.44 -44.53 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.50 Total: 3.16 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.14 Total: -4.36 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.25 Total: -55.67 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.29 Total: -15.72 kcal Atomic # 14 Polarization: 27.32 SS G_CDS: -4.27 Total: 23.04 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.09 -8.44 -44.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053556644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.740 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds