Wall clock time and date at job start Tue Mar 31 2020 02:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48500 * 109.46792 * 355.35341 * 3 2 1 5 5 H 1.48492 * 109.47231 * 235.35758 * 3 2 1 6 6 H 1.48498 * 109.47203 * 115.35067 * 3 2 1 7 7 C 1.38817 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00020 * 352.35285 * 7 2 1 9 9 N 1.36936 * 120.00069 * 172.36313 * 7 2 1 10 10 C 1.47277 * 135.93235 * 6.40623 * 9 7 2 11 11 C 1.52625 * 87.60970 * 153.90599 * 10 9 7 12 12 C 1.47276 * 135.93941 * 186.78410 * 9 7 2 13 13 C 1.53883 * 115.57898 * 141.35408 * 11 10 9 14 14 C 1.55506 * 100.75842 * 166.92639 * 13 11 10 15 15 C 1.54478 * 102.38774 * 327.02991 * 14 13 11 16 16 H 1.08989 * 109.83027 * 261.85608 * 15 14 13 17 17 C 1.52995 * 109.82919 * 140.87188 * 15 14 13 18 18 N 1.46498 * 109.46870 * 180.42178 * 17 15 14 19 19 C 1.34782 * 120.00161 * 180.02562 * 18 17 15 20 20 O 1.21281 * 119.99768 * 0.02562 * 19 18 17 21 21 C 1.50693 * 120.00313 * 180.02562 * 19 18 17 22 22 C 1.52995 * 117.50299 * 248.74501 * 21 19 18 23 23 C 1.53004 * 117.50215 * 180.08180 * 21 19 18 24 24 O 1.42407 * 116.98580 * 268.27091 * 11 10 9 25 25 H 0.96995 * 120.00022 * 184.92214 * 1 2 3 26 26 H 1.09006 * 113.51737 * 268.56865 * 10 9 7 27 27 H 1.08998 * 113.51798 * 39.15374 * 10 9 7 28 28 H 1.08997 * 113.50694 * 320.84973 * 12 9 7 29 29 H 1.08997 * 113.50949 * 91.36119 * 12 9 7 30 30 H 1.08998 * 111.16268 * 284.80492 * 13 11 10 31 31 H 1.09004 * 111.16024 * 49.05769 * 13 11 10 32 32 H 1.09000 * 110.82653 * 208.80701 * 14 13 11 33 33 H 1.08997 * 110.99064 * 85.33099 * 14 13 11 34 34 H 1.08997 * 109.48044 * 300.42955 * 17 15 14 35 35 H 1.09000 * 109.47235 * 60.42743 * 17 15 14 36 36 H 0.96997 * 120.00521 * 0.02562 * 18 17 15 37 37 H 1.09006 * 115.54983 * 34.41958 * 21 19 18 38 38 H 1.09005 * 117.49487 * 0.02562 * 22 21 19 39 39 H 1.09003 * 117.50432 * 145.01602 * 22 21 19 40 40 H 1.08990 * 117.50506 * 214.97921 * 23 21 19 41 41 H 1.09001 * 117.49613 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2894 2.7441 -0.1134 5 1 3.1871 1.6483 -1.1518 6 1 3.0170 1.7465 1.2652 7 6 2.0102 -1.2022 -0.0005 8 1 1.4773 -2.1334 0.1235 9 7 3.3704 -1.2075 -0.1581 10 6 4.4309 -0.1884 -0.2338 11 6 5.3993 -1.2498 0.2811 12 6 4.4116 -2.2344 -0.3327 13 6 6.8024 -1.2315 -0.3506 14 6 7.5722 -2.1662 0.6252 15 6 6.8804 -1.8773 1.9759 16 1 7.4708 -1.1617 2.5480 17 6 6.7259 -3.1769 2.7683 18 7 6.0604 -2.8955 4.0427 19 6 5.8170 -3.8968 4.9114 20 8 6.1495 -5.0307 4.6383 21 6 5.1319 -3.6075 6.2221 22 6 5.9617 -3.7497 7.4996 23 6 4.8858 -4.7862 7.1660 24 8 5.5868 -1.3239 1.6908 25 1 -0.4850 -0.8369 0.0721 26 1 4.6465 0.1403 -1.2505 27 1 4.2862 0.6421 0.4571 28 1 4.2504 -3.1247 0.2751 29 1 4.6209 -2.4683 -1.3765 30 1 6.7852 -1.6441 -1.3593 31 1 7.2229 -0.2259 -0.3460 32 1 8.6281 -1.8990 0.6657 33 1 7.4493 -3.2118 0.3428 34 1 6.1271 -3.8837 2.1940 35 1 7.7098 -3.6053 2.9591 36 1 5.7948 -1.9885 4.2613 37 1 4.3801 -2.8186 6.1955 38 1 7.0034 -4.0522 7.3919 39 1 5.7558 -3.0547 8.3136 40 1 3.9725 -4.7727 7.7606 41 1 5.2190 -5.7711 6.8387 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053556644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:02 Heat of formation + Delta-G solvation = -17.668287 kcal Electronic energy + Delta-G solvation = -22380.815291 eV Core-core repulsion = 19069.693405 eV Total energy + Delta-G solvation = -3311.121886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70011 -40.89298 -38.45766 -37.13740 -35.66640 -34.49612 -33.19138 -31.09017 -28.90322 -27.19662 -26.06478 -24.22809 -23.34950 -22.73295 -22.57324 -21.02153 -20.78106 -19.55128 -18.53342 -17.80675 -17.48807 -17.11464 -16.41379 -16.17554 -15.84851 -15.68043 -15.38441 -15.19173 -15.01780 -14.58168 -14.19575 -13.76999 -13.57270 -13.40640 -13.29864 -12.65647 -12.55120 -12.53278 -12.45263 -12.26616 -12.14641 -11.60188 -11.56529 -11.48466 -11.36035 -11.05202 -11.01598 -10.95669 -10.34110 -10.16305 -9.21234 -8.68879 -5.48224 1.36463 1.41725 1.48610 1.67942 2.09792 2.53209 2.63504 2.87384 2.97576 3.20881 3.41441 3.65320 3.68288 3.75599 3.82841 3.85356 3.95857 4.16490 4.21759 4.36516 4.43665 4.51951 4.57426 4.60717 4.69332 4.70967 4.79768 4.86213 4.88818 4.93896 4.98584 5.02764 5.13574 5.17953 5.18310 5.31850 5.37151 5.91479 6.22396 6.46342 6.67125 7.15234 7.30339 8.24971 8.87038 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.005002 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.368267 B = 5596.581268 C = 6662.798076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.086 4.086 3 Si 1.114 2.886 4 H -0.303 1.303 5 H -0.250 1.250 6 H -0.278 1.278 7 C -0.292 4.292 8 H 0.040 0.960 9 N -0.658 5.658 10 C 0.095 3.905 11 C 0.088 3.912 12 C 0.104 3.896 13 C -0.128 4.128 14 C -0.135 4.135 15 C 0.062 3.938 16 H 0.113 0.887 17 C 0.113 3.887 18 N -0.712 5.712 19 C 0.534 3.466 20 O -0.591 6.591 21 C -0.213 4.213 22 C -0.128 4.128 23 C -0.155 4.155 24 O -0.364 6.364 25 H 0.243 0.757 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.413 0.587 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.134 -2.173 8.908 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.277 4.277 3 Si 0.939 3.061 4 H -0.231 1.231 5 H -0.175 1.175 6 H -0.205 1.205 7 C -0.419 4.419 8 H 0.058 0.942 9 N -0.387 5.387 10 C -0.029 4.029 11 C 0.047 3.953 12 C -0.022 4.022 13 C -0.166 4.166 14 C -0.172 4.172 15 C 0.005 3.995 16 H 0.131 0.869 17 C -0.011 4.011 18 N -0.363 5.363 19 C 0.323 3.677 20 O -0.472 6.472 21 C -0.234 4.234 22 C -0.166 4.166 23 C -0.192 4.192 24 O -0.283 6.283 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.249 0.751 37 H 0.154 0.846 38 H 0.114 0.886 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 21.797 -1.305 8.803 23.544 hybrid contribution -1.118 -1.955 -0.109 2.255 sum 20.679 -3.260 8.694 22.668 Atomic orbital electron populations 1.71031 1.06691 1.28393 1.55526 1.27189 0.96445 1.04714 0.99363 0.83213 0.73283 0.71402 0.78195 1.23118 1.17493 1.20498 1.19951 0.81315 0.94236 1.46412 0.94246 1.46006 1.01424 1.05160 1.86110 1.23117 0.86424 0.93977 0.99409 1.22853 0.94932 0.95608 0.81954 1.22988 0.87262 0.93295 0.98636 1.23016 0.90871 1.02307 1.00393 1.23114 1.01724 1.01027 0.91381 1.23369 0.84469 0.93862 0.97819 0.86949 1.21833 0.97898 0.97442 0.83919 1.45852 1.60431 1.11624 1.18353 1.20223 0.77776 0.84139 0.85605 1.90643 1.54857 1.23157 1.78590 1.22275 1.05920 1.05839 0.89327 1.23051 0.96781 1.01792 0.94929 1.23020 1.02054 0.93842 1.00315 1.88335 1.35689 1.82757 1.21550 0.94779 0.90126 0.93326 0.95338 0.91147 0.87832 0.87809 0.86111 0.90013 0.93911 0.89016 0.75089 0.84577 0.88599 0.84959 0.85971 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.14 13.70 21.65 0.30 -64.85 16 2 C -0.09 -5.37 5.50 84.86 0.47 -4.91 16 3 Si 1.11 54.82 25.14 68.60 1.72 56.54 16 4 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 5 H -0.25 -10.66 6.10 99.48 0.61 -10.06 16 6 H -0.28 -12.88 6.63 99.48 0.66 -12.22 16 7 C -0.29 -18.05 11.08 84.03 0.93 -17.11 16 8 H 0.04 2.68 8.05 -2.91 -0.02 2.65 16 9 N -0.66 -33.45 3.70 -740.05 -2.74 -36.19 16 10 C 0.09 3.81 5.26 83.56 0.44 4.25 16 11 C 0.09 2.82 1.56 -10.82 -0.02 2.81 16 12 C 0.10 4.13 8.24 83.47 0.69 4.82 16 13 C -0.13 -2.48 6.49 31.76 0.21 -2.27 16 14 C -0.13 -2.10 6.56 31.96 0.21 -1.89 16 15 C 0.06 1.32 3.62 31.10 0.11 1.43 16 16 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 17 C 0.11 2.75 5.23 86.38 0.45 3.20 16 18 N -0.71 -18.27 5.47 -463.08 -2.53 -20.81 16 19 C 0.53 15.34 7.61 87.65 0.67 16.01 16 20 O -0.59 -21.31 16.26 -3.03 -0.05 -21.36 16 21 C -0.21 -4.61 6.19 -11.54 -0.07 -4.68 16 22 C -0.13 -2.01 10.24 30.62 0.31 -1.70 16 23 C -0.15 -3.02 10.05 30.62 0.31 -2.71 16 24 O -0.36 -11.85 10.69 -148.98 -1.59 -13.45 16 25 H 0.24 16.49 8.73 -92.71 -0.81 15.68 16 26 H 0.08 2.89 7.67 -2.38 -0.02 2.87 16 27 H 0.05 2.06 4.72 -2.39 -0.01 2.04 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 2.47 7.99 -2.39 -0.02 2.45 16 30 H 0.10 1.72 7.93 -2.39 -0.02 1.71 16 31 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.30 7.85 -2.39 -0.02 1.28 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.41 9.45 8.40 -92.71 -0.78 8.67 16 37 H 0.14 2.63 8.14 -2.38 -0.02 2.61 16 38 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.09 2.06 7.67 -2.39 -0.02 2.04 16 Total: -1.00 -83.95 332.84 -0.13 -84.08 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.06 Total: 18.81 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 4.71 Total: -2.77 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -4.98 Total: -121.85 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.64 Total: -34.81 kcal Atomic # 14 Polarization: 54.82 SS G_CDS: 1.72 Total: 56.54 kcal Total: -83.95 -0.13 -84.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053556644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.408 kcal (2) G-P(sol) polarization free energy of solvation -83.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds