Wall clock time and date at job start Tue Mar 31 2020 02:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47220 * 135.96808 * 359.35785 * 9 7 2 11 11 C 1.52915 * 87.68348 * 153.66706 * 10 9 7 12 12 C 1.47224 * 135.96376 * 179.72312 * 9 7 2 13 13 C 1.53317 * 115.72956 * 270.11806 * 11 10 9 14 14 C 1.55025 * 103.78869 * 229.63824 * 13 11 10 15 15 H 1.09003 * 110.87257 * 139.21822 * 14 13 11 16 16 N 1.46496 * 110.87246 * 262.69462 * 14 13 11 17 17 C 1.34777 * 120.00399 * 204.99822 * 16 14 13 18 18 O 1.21285 * 119.99547 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00519 * 179.97438 * 17 16 14 20 20 C 1.52998 * 109.47670 * 180.02562 * 19 17 16 21 21 C 1.53000 * 117.49917 * 243.62474 * 20 19 17 22 22 C 1.52993 * 59.99969 * 252.50733 * 21 20 19 23 23 C 1.55063 * 102.13072 * 20.85468 * 14 13 11 24 24 O 1.42846 * 115.81516 * 141.74038 * 11 10 9 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.49518 * 268.34527 * 10 9 7 27 27 H 1.08998 * 113.50705 * 38.89365 * 10 9 7 28 28 H 1.09002 * 113.50578 * 321.10171 * 12 9 7 29 29 H 1.08998 * 113.50446 * 91.58765 * 12 9 7 30 30 H 1.09002 * 110.56619 * 348.21584 * 13 11 10 31 31 H 1.08999 * 110.56481 * 111.06491 * 13 11 10 32 32 H 0.97003 * 119.99935 * 25.00179 * 16 14 13 33 33 H 1.09002 * 109.46997 * 300.00571 * 19 17 16 34 34 H 1.09005 * 109.47158 * 59.99958 * 19 17 16 35 35 H 1.09005 * 115.54416 * 29.33106 * 20 19 17 36 36 H 1.08994 * 117.50151 * 0.02562 * 21 20 19 37 37 H 1.09008 * 117.49662 * 145.01898 * 21 20 19 38 38 H 1.09001 * 117.50022 * 252.51110 * 22 21 20 39 39 H 1.08998 * 117.49856 * 107.48889 * 22 21 20 40 40 H 1.09000 * 110.58523 * 82.02776 * 23 14 13 41 41 H 1.09004 * 110.58359 * 204.93198 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0899 -2.7930 -0.0023 11 6 0.3423 -4.0867 -0.6934 12 6 1.6824 -3.8163 -0.0143 13 6 0.3578 -4.0495 -2.2261 14 6 -0.4283 -5.3217 -2.6345 15 1 -1.0875 -5.1168 -3.4781 16 7 0.4864 -6.4230 -2.9456 17 6 0.0938 -7.4118 -3.7730 18 8 -1.0165 -7.3896 -4.2604 19 6 1.0349 -8.5444 -4.0935 20 6 0.3484 -9.5235 -5.0479 21 6 0.0973 -10.9452 -4.5413 22 6 1.1831 -10.6866 -5.5876 23 6 -1.2440 -5.6267 -1.3515 24 8 -0.3407 -5.2711 -0.2798 25 1 -0.4850 0.8401 0.0004 26 1 -0.4942 -2.9487 0.9979 27 1 -0.7253 -2.1593 -0.6210 28 1 2.5426 -4.0461 -0.6432 29 1 1.7610 -4.2500 0.9826 30 1 -0.1452 -3.1545 -2.5925 31 1 1.3807 -4.0951 -2.5999 32 1 1.3745 -6.4406 -2.5560 33 1 1.9337 -8.1474 -4.5653 34 1 1.3060 -9.0628 -3.1737 35 1 -0.3964 -9.0870 -5.7134 36 1 0.4207 -11.1829 -3.5280 37 1 -0.8131 -11.4444 -4.8735 38 1 0.9872 -11.0156 -6.6082 39 1 2.2213 -10.7542 -5.2628 40 1 -2.1436 -5.0123 -1.3143 41 1 -1.4993 -6.6852 -1.3024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053719083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:11 Heat of formation + Delta-G solvation = 3.366528 kcal Electronic energy + Delta-G solvation = -22014.110310 eV Core-core repulsion = 18703.900563 eV Total energy + Delta-G solvation = -3310.209748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39791 -39.32473 -37.32006 -36.31231 -34.27619 -32.13886 -31.00220 -29.10348 -27.99978 -25.81683 -24.76107 -22.65010 -22.43838 -21.97506 -20.76908 -20.15436 -18.81663 -17.41865 -16.89814 -16.51891 -15.70183 -15.43205 -15.20452 -15.01154 -14.33920 -14.32548 -14.20580 -13.72594 -13.46372 -12.98028 -12.61711 -12.43558 -12.06662 -11.77764 -11.69144 -11.39076 -11.36553 -11.06996 -10.94222 -10.82303 -10.73561 -10.61978 -10.58071 -10.26759 -10.10713 -9.79573 -9.57167 -9.14536 -8.85644 -8.61983 -6.95689 -5.82062 -3.15520 2.59366 3.08786 3.36573 3.40479 3.42278 3.58116 4.21246 4.43613 4.47428 4.52737 4.66710 4.75255 4.89479 5.05757 5.17130 5.21271 5.26026 5.33082 5.33927 5.37689 5.42288 5.51139 5.59438 5.64239 5.85319 5.86841 5.90882 6.06743 6.17048 6.28724 6.35425 6.51638 6.56885 6.62031 6.95146 7.16034 7.45180 7.49611 7.61432 7.90867 8.19660 8.97586 9.64116 10.56537 11.35296 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036887 B = 0.003265 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.891537 B = 8573.145447 C = 8780.296459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.148 3.852 11 C 0.043 3.957 12 C 0.128 3.872 13 C -0.114 4.114 14 C 0.106 3.894 15 H 0.104 0.896 16 N -0.715 5.715 17 C 0.515 3.485 18 O -0.543 6.543 19 C -0.112 4.112 20 C -0.139 4.139 21 C -0.179 4.179 22 C -0.182 4.182 23 C 0.041 3.959 24 O -0.363 6.363 25 H 0.255 0.745 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.403 0.597 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -17.952 -8.578 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.330 5.330 10 C 0.021 3.979 11 C 0.002 3.998 12 C 0.002 3.998 13 C -0.152 4.152 14 C 0.001 3.999 15 H 0.122 0.878 16 N -0.366 5.366 17 C 0.302 3.698 18 O -0.420 6.420 19 C -0.151 4.151 20 C -0.158 4.158 21 C -0.216 4.216 22 C -0.219 4.219 23 C -0.037 4.037 24 O -0.281 6.281 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.238 0.762 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.968 -17.660 -8.729 19.724 hybrid contribution 0.836 1.023 0.299 1.355 sum 1.804 -16.637 -8.430 18.738 Atomic orbital electron populations 1.69820 1.05044 1.25622 1.56006 1.24814 0.95711 0.97585 1.02200 0.86163 0.78458 0.82935 0.77972 1.21001 1.21498 1.21103 1.18837 0.90055 0.81048 1.44643 0.89996 1.45297 1.02601 0.99046 1.86025 1.22518 0.89014 0.88985 0.97336 1.23904 0.96051 0.86571 0.93273 1.22421 0.93218 0.86727 0.97450 1.22664 1.01484 0.96690 0.94391 1.22623 0.92287 0.86350 0.98603 0.87758 1.45999 1.18458 1.23846 1.48291 1.20586 0.88203 0.82952 0.78076 1.90683 1.21685 1.77326 1.52352 1.21231 0.98432 0.94871 1.00614 1.22051 1.02603 0.89200 1.01920 1.23034 1.00466 0.98972 0.99114 1.22999 0.96794 1.02994 0.99091 1.23883 0.93161 1.00819 0.85840 1.88749 1.55312 1.43757 1.40239 0.93472 0.95021 0.90795 0.93899 0.94202 0.88605 0.89949 0.76230 0.88431 0.88706 0.86392 0.88809 0.88798 0.88738 0.88764 0.91251 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 11.51 55.49 0.64 -26.29 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.03 10.74 -15.06 -0.16 -6.19 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.26 3.74 -184.61 -0.69 -15.95 16 10 C 0.15 3.51 6.92 -7.90 -0.05 3.45 16 11 C 0.04 0.81 1.66 -90.68 -0.15 0.66 16 12 C 0.13 2.64 8.20 -8.03 -0.07 2.57 16 13 C -0.11 -1.85 6.11 -25.50 -0.16 -2.00 16 14 C 0.11 1.49 3.51 -65.77 -0.23 1.26 16 15 H 0.10 1.50 7.54 -51.93 -0.39 1.11 16 16 N -0.71 -8.46 5.15 -51.72 -0.27 -8.72 16 17 C 0.52 6.26 7.83 -10.99 -0.09 6.17 16 18 O -0.54 -8.57 15.20 5.55 0.08 -8.49 16 19 C -0.11 -0.96 5.98 -27.89 -0.17 -1.12 16 20 C -0.14 -1.28 5.41 -90.62 -0.49 -1.77 16 21 C -0.18 -1.44 10.18 -26.73 -0.27 -1.71 16 22 C -0.18 -1.32 10.25 -26.74 -0.27 -1.59 16 23 C 0.04 0.61 7.42 38.25 0.28 0.90 16 24 O -0.36 -6.46 11.32 -35.23 -0.40 -6.86 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.90 6.93 -51.93 -0.36 1.54 16 28 H 0.04 0.80 7.91 -51.93 -0.41 0.39 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.68 7.82 -51.93 -0.41 1.28 16 31 H 0.08 1.26 7.70 -51.93 -0.40 0.87 16 32 H 0.40 4.06 8.63 -40.82 -0.35 3.71 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.68 7.88 -51.93 -0.41 0.27 16 35 H 0.12 1.31 7.30 -51.93 -0.38 0.93 16 36 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 37 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -32.10 338.53 -8.93 -41.03 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.45 Total: 3.08 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.92 Total: 0.35 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.32 Total: -50.97 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.31 Total: -15.35 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.10 -8.93 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053719083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.397 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds