Wall clock time and date at job start Tue Mar 31 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47220 * 135.96808 * 359.35785 * 9 7 2 11 11 C 1.52915 * 87.68348 * 153.66706 * 10 9 7 12 12 C 1.47224 * 135.96376 * 179.72312 * 9 7 2 13 13 C 1.53317 * 115.72956 * 270.11806 * 11 10 9 14 14 C 1.55025 * 103.78869 * 229.63824 * 13 11 10 15 15 H 1.09003 * 110.87257 * 139.21822 * 14 13 11 16 16 N 1.46496 * 110.87246 * 262.69462 * 14 13 11 17 17 C 1.34777 * 120.00399 * 204.99822 * 16 14 13 18 18 O 1.21285 * 119.99547 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00519 * 179.97438 * 17 16 14 20 20 C 1.52998 * 109.47670 * 180.02562 * 19 17 16 21 21 C 1.53000 * 117.49917 * 243.62474 * 20 19 17 22 22 C 1.52993 * 59.99969 * 252.50733 * 21 20 19 23 23 C 1.55063 * 102.13072 * 20.85468 * 14 13 11 24 24 O 1.42846 * 115.81516 * 141.74038 * 11 10 9 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.49518 * 268.34527 * 10 9 7 27 27 H 1.08998 * 113.50705 * 38.89365 * 10 9 7 28 28 H 1.09002 * 113.50578 * 321.10171 * 12 9 7 29 29 H 1.08998 * 113.50446 * 91.58765 * 12 9 7 30 30 H 1.09002 * 110.56619 * 348.21584 * 13 11 10 31 31 H 1.08999 * 110.56481 * 111.06491 * 13 11 10 32 32 H 0.97003 * 119.99935 * 25.00179 * 16 14 13 33 33 H 1.09002 * 109.46997 * 300.00571 * 19 17 16 34 34 H 1.09005 * 109.47158 * 59.99958 * 19 17 16 35 35 H 1.09005 * 115.54416 * 29.33106 * 20 19 17 36 36 H 1.08994 * 117.50151 * 0.02562 * 21 20 19 37 37 H 1.09008 * 117.49662 * 145.01898 * 21 20 19 38 38 H 1.09001 * 117.50022 * 252.51110 * 22 21 20 39 39 H 1.08998 * 117.49856 * 107.48889 * 22 21 20 40 40 H 1.09000 * 110.58523 * 82.02776 * 23 14 13 41 41 H 1.09004 * 110.58359 * 204.93198 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0899 -2.7930 -0.0023 11 6 0.3423 -4.0867 -0.6934 12 6 1.6824 -3.8163 -0.0143 13 6 0.3578 -4.0495 -2.2261 14 6 -0.4283 -5.3217 -2.6345 15 1 -1.0875 -5.1168 -3.4781 16 7 0.4864 -6.4230 -2.9456 17 6 0.0938 -7.4118 -3.7730 18 8 -1.0165 -7.3896 -4.2604 19 6 1.0349 -8.5444 -4.0935 20 6 0.3484 -9.5235 -5.0479 21 6 0.0973 -10.9452 -4.5413 22 6 1.1831 -10.6866 -5.5876 23 6 -1.2440 -5.6267 -1.3515 24 8 -0.3407 -5.2711 -0.2798 25 1 -0.4850 0.8401 0.0004 26 1 -0.4942 -2.9487 0.9979 27 1 -0.7253 -2.1593 -0.6210 28 1 2.5426 -4.0461 -0.6432 29 1 1.7610 -4.2500 0.9826 30 1 -0.1452 -3.1545 -2.5925 31 1 1.3807 -4.0951 -2.5999 32 1 1.3745 -6.4406 -2.5560 33 1 1.9337 -8.1474 -4.5653 34 1 1.3060 -9.0628 -3.1737 35 1 -0.3964 -9.0870 -5.7134 36 1 0.4207 -11.1829 -3.5280 37 1 -0.8131 -11.4444 -4.8735 38 1 0.9872 -11.0156 -6.6082 39 1 2.2213 -10.7542 -5.2628 40 1 -2.1436 -5.0123 -1.3143 41 1 -1.4993 -6.6852 -1.3024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053719083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:10 Heat of formation + Delta-G solvation = -18.391147 kcal Electronic energy + Delta-G solvation = -22015.053794 eV Core-core repulsion = 18703.900563 eV Total energy + Delta-G solvation = -3311.153231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72163 -40.49931 -38.22872 -37.69437 -35.45781 -34.16798 -32.11317 -30.29083 -29.47683 -27.46705 -26.53380 -24.01535 -23.33894 -23.14268 -21.79320 -20.96494 -20.44376 -18.77477 -18.33966 -17.78064 -17.06151 -16.64416 -16.53112 -16.29981 -15.85642 -15.54777 -15.48061 -14.92450 -14.49360 -14.42707 -14.14344 -13.76519 -13.43337 -13.03589 -12.83885 -12.74073 -12.55072 -12.45467 -12.41649 -12.31242 -12.26810 -12.17638 -11.93010 -11.49293 -11.26921 -10.95003 -10.88215 -10.72555 -10.51529 -9.95034 -8.98859 -7.92591 -5.27898 1.46703 1.50321 1.56451 1.65958 2.14467 2.43501 2.87623 2.97352 3.26700 3.39325 3.58488 3.64888 3.69149 3.80999 3.81796 3.98904 4.09783 4.21923 4.37116 4.56057 4.63633 4.68647 4.71242 4.74404 4.80013 4.82670 4.84559 4.88922 4.93617 4.97466 5.08616 5.15376 5.20395 5.30958 5.37815 5.46070 5.50107 5.85138 6.08109 6.58490 6.86432 7.27391 7.56494 8.55196 9.24851 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036887 B = 0.003265 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.891537 B = 8573.145447 C = 8780.296459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.066 4.066 3 Si 0.983 3.017 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.229 4.229 8 H 0.092 0.908 9 N -0.628 5.628 10 C 0.140 3.860 11 C 0.071 3.929 12 C 0.130 3.870 13 C -0.106 4.106 14 C 0.121 3.879 15 H 0.102 0.898 16 N -0.707 5.707 17 C 0.514 3.486 18 O -0.584 6.584 19 C -0.102 4.102 20 C -0.159 4.159 21 C -0.184 4.184 22 C -0.165 4.165 23 C 0.038 3.962 24 O -0.369 6.369 25 H 0.249 0.751 26 H 0.007 0.993 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.415 0.585 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 -19.549 -9.297 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.811 3.189 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.357 4.357 8 H 0.110 0.890 9 N -0.355 5.355 10 C 0.014 3.986 11 C 0.030 3.970 12 C 0.004 3.996 13 C -0.144 4.144 14 C 0.015 3.985 15 H 0.120 0.880 16 N -0.359 5.359 17 C 0.303 3.697 18 O -0.464 6.464 19 C -0.141 4.141 20 C -0.178 4.178 21 C -0.221 4.221 22 C -0.202 4.202 23 C -0.039 4.039 24 O -0.287 6.287 25 H 0.058 0.942 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.252 0.748 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.190 -19.302 -9.443 21.724 hybrid contribution 0.109 1.438 0.547 1.543 sum 3.299 -17.864 -8.896 20.228 Atomic orbital electron populations 1.70026 1.06639 1.25840 1.57688 1.25698 0.96549 1.01065 1.02636 0.85087 0.77073 0.78338 0.78434 1.19666 1.22281 1.20361 1.19297 0.90832 0.82169 1.43368 0.88990 1.45587 1.03387 1.00532 1.86035 1.22487 0.88385 0.91545 0.96205 1.23423 0.94386 0.84805 0.94380 1.22526 0.94970 0.83932 0.98139 1.22544 1.02567 0.97136 0.92163 1.22324 0.92101 0.86142 0.97947 0.87969 1.45912 1.18607 1.23120 1.48250 1.21253 0.88141 0.83328 0.77013 1.90676 1.23690 1.78234 1.53770 1.21261 0.97958 0.93324 1.01590 1.21992 1.03314 0.89930 1.02545 1.23127 1.00934 0.98052 1.00023 1.23083 0.97321 1.00661 0.99145 1.24044 0.92819 1.01602 0.85471 1.88740 1.55733 1.42652 1.41565 0.94210 0.97484 0.93662 0.90989 0.94135 0.90368 0.88366 0.74795 0.86088 0.86528 0.89032 0.87818 0.89207 0.88348 0.87021 0.91272 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.56 11.51 21.65 0.25 -57.31 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.98 44.97 29.55 68.60 2.03 46.99 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.23 -12.60 10.74 84.04 0.90 -11.70 16 8 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 9 N -0.63 -31.93 3.74 -739.10 -2.76 -34.70 16 10 C 0.14 6.87 6.92 83.49 0.58 7.44 16 11 C 0.07 2.64 1.66 -10.83 -0.02 2.62 16 12 C 0.13 5.14 8.20 83.40 0.68 5.82 16 13 C -0.11 -3.30 6.11 31.39 0.19 -3.11 16 14 C 0.12 3.20 3.51 46.39 0.16 3.37 16 15 H 0.10 2.84 7.54 -2.39 -0.02 2.83 16 16 N -0.71 -14.91 5.15 -435.93 -2.24 -17.16 16 17 C 0.51 11.43 7.83 87.66 0.69 12.11 16 18 O -0.58 -17.97 15.20 -3.04 -0.05 -18.01 16 19 C -0.10 -1.44 5.98 29.85 0.18 -1.26 16 20 C -0.16 -2.64 5.41 -10.80 -0.06 -2.70 16 21 C -0.18 -2.60 10.18 30.59 0.31 -2.29 16 22 C -0.17 -1.95 10.25 30.59 0.31 -1.64 16 23 C 0.04 1.10 7.42 72.69 0.54 1.63 16 24 O -0.37 -12.70 11.32 -148.98 -1.69 -14.38 16 25 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 26 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.05 2.45 6.93 -2.39 -0.02 2.43 16 28 H 0.07 2.45 7.91 -2.39 -0.02 2.43 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 2.76 7.82 -2.39 -0.02 2.74 16 31 H 0.10 2.77 7.70 -2.39 -0.02 2.75 16 32 H 0.42 6.88 8.63 -92.71 -0.80 6.08 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.12 1.18 7.88 -2.38 -0.02 1.16 16 35 H 0.09 2.02 7.30 -2.38 -0.02 2.00 16 36 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 37 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -70.67 338.53 0.70 -69.97 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.23 Total: 17.57 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 4.94 Total: 7.03 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -4.76 Total: -109.17 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.73 Total: -32.40 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -70.67 0.70 -69.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053719083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.578 kcal (2) G-P(sol) polarization free energy of solvation -70.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds