Wall clock time and date at job start Tue Mar 31 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00171 * 2 1 4 4 H 1.48493 * 109.47229 * 85.02406 * 3 2 1 5 5 H 1.48503 * 109.46902 * 205.02047 * 3 2 1 6 6 H 1.48495 * 109.47086 * 325.01428 * 3 2 1 7 7 C 1.38815 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99442 * 186.41624 * 7 2 1 9 9 N 1.36927 * 120.00379 * 6.41318 * 7 2 1 10 10 C 1.47213 * 135.97368 * 6.11811 * 9 7 2 11 11 C 1.52977 * 87.69448 * 153.61366 * 10 9 7 12 12 C 1.47212 * 135.97634 * 186.48128 * 9 7 2 13 13 C 1.53658 * 115.11773 * 140.89856 * 11 10 9 14 14 C 1.55487 * 101.96709 * 111.47494 * 13 11 10 15 15 H 1.09002 * 111.10769 * 275.54329 * 14 13 11 16 16 N 1.46507 * 111.14134 * 151.44774 * 14 13 11 17 17 C 1.34772 * 119.99889 * 161.86905 * 16 14 13 18 18 O 1.21278 * 120.00197 * 359.97438 * 17 16 14 19 19 C 1.50706 * 119.99724 * 180.02562 * 17 16 14 20 20 C 1.52995 * 109.46785 * 179.97438 * 19 17 16 21 21 C 1.53005 * 117.49709 * 243.61920 * 20 19 17 22 22 C 1.53001 * 60.00086 * 252.51039 * 21 20 19 23 23 C 1.55018 * 101.04453 * 33.48888 * 14 13 11 24 24 O 1.42394 * 116.32169 * 269.47456 * 11 10 9 25 25 H 0.96996 * 119.99453 * 359.97438 * 1 2 3 26 26 H 1.09006 * 113.49648 * 268.29397 * 10 9 7 27 27 H 1.09004 * 113.49844 * 38.82835 * 10 9 7 28 28 H 1.09001 * 113.50018 * 321.17387 * 12 9 7 29 29 H 1.09000 * 113.50073 * 91.64022 * 12 9 7 30 30 H 1.08999 * 110.92919 * 229.64715 * 13 11 10 31 31 H 1.09002 * 110.93072 * 353.30768 * 13 11 10 32 32 H 0.97000 * 119.99688 * 341.87262 * 16 14 13 33 33 H 1.08996 * 109.46589 * 299.99176 * 19 17 16 34 34 H 1.08999 * 109.47022 * 59.99712 * 19 17 16 35 35 H 1.09000 * 115.55536 * 29.32580 * 20 19 17 36 36 H 1.08999 * 117.49820 * 359.97438 * 21 20 19 37 37 H 1.08996 * 117.50152 * 145.02639 * 21 20 19 38 38 H 1.08995 * 117.50111 * 252.51138 * 22 21 20 39 39 H 1.09001 * 117.51870 * 107.47566 * 22 21 20 40 40 H 1.09002 * 110.29986 * 205.04598 * 23 14 13 41 41 H 1.09005 * 110.29921 * 82.89928 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3926 2.1071 1.3947 5 1 3.5965 1.4119 -0.5922 6 1 1.5044 2.6199 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3319 -2.3844 -0.1314 10 6 -0.0600 -2.7820 -0.3988 11 6 0.4896 -4.0826 -0.9873 12 6 1.6740 -3.8145 -0.0616 13 6 -0.3266 -5.3427 -0.6600 14 6 -0.9145 -5.7162 -2.0501 15 1 -1.8290 -5.1585 -2.2522 16 7 -1.1462 -7.1590 -2.1556 17 6 -1.9707 -7.6413 -3.1062 18 8 -2.5213 -6.8811 -3.8741 19 6 -2.2094 -9.1254 -3.2143 20 6 -3.1778 -9.4036 -4.3657 21 6 -4.5302 -10.0280 -4.0160 22 6 -3.4583 -10.8666 -4.7151 23 6 0.2335 -5.2650 -2.9890 24 8 0.7701 -4.0751 -2.3833 25 1 -0.4849 0.8401 0.0004 26 1 -0.6511 -2.9296 0.5051 27 1 -0.5598 -2.1485 -1.1317 28 1 2.6386 -4.0531 -0.5097 29 1 1.5543 -4.2420 0.9339 30 1 0.3179 -6.1371 -0.2835 31 1 -1.1213 -5.1181 0.0514 32 1 -0.7061 -7.7670 -1.5411 33 1 -1.2635 -9.6326 -3.4042 34 1 -2.6384 -9.4933 -2.2822 35 1 -3.1514 -8.6864 -5.1860 36 1 -4.7298 -10.2410 -2.9658 37 1 -5.3937 -9.7216 -4.6063 38 1 -3.6166 -11.1117 -5.7652 39 1 -2.9524 -11.6308 -4.1250 40 1 -0.1560 -5.0413 -3.9821 41 1 0.9998 -6.0380 -3.0478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053719084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:14 Heat of formation + Delta-G solvation = 6.917995 kcal Electronic energy + Delta-G solvation = -21775.434892 eV Core-core repulsion = 18465.379148 eV Total energy + Delta-G solvation = -3310.055744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38056 -39.40328 -37.38526 -36.24818 -34.49298 -32.10849 -31.07591 -29.32041 -27.89495 -25.68147 -24.75619 -22.71899 -22.60421 -21.68329 -20.98867 -20.24893 -19.04730 -17.52128 -16.73878 -16.51107 -15.82795 -15.40806 -15.19947 -14.91486 -14.57024 -14.26216 -13.93379 -13.64477 -13.41095 -13.16332 -13.02471 -12.71953 -11.94900 -11.88603 -11.83153 -11.71735 -11.49826 -11.17845 -11.12373 -10.78708 -10.67091 -10.45755 -10.34236 -10.19017 -9.97637 -9.79029 -9.45930 -9.13375 -8.77251 -8.63060 -6.84805 -5.73470 -3.03439 2.50245 2.92346 3.43174 3.48198 3.51021 3.51758 4.19246 4.36046 4.39331 4.50129 4.60749 4.62125 4.82611 5.01330 5.05736 5.10701 5.21321 5.26351 5.29808 5.32190 5.35955 5.42962 5.59499 5.64987 5.80295 5.84823 5.89592 5.98145 6.03183 6.08376 6.32953 6.40498 6.55974 6.63371 6.95728 7.19958 7.34917 7.54358 7.77979 8.01624 8.09721 9.07886 9.74776 10.67862 11.45806 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.050120 B = 0.002959 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.520275 B = 9459.413751 C = 9598.452121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.289 1.289 7 C -0.215 4.215 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.160 3.840 11 C 0.056 3.944 12 C 0.111 3.889 13 C -0.141 4.141 14 C 0.112 3.888 15 H 0.106 0.894 16 N -0.720 5.720 17 C 0.514 3.486 18 O -0.533 6.533 19 C -0.110 4.110 20 C -0.141 4.141 21 C -0.178 4.178 22 C -0.181 4.181 23 C 0.042 3.958 24 O -0.334 6.334 25 H 0.254 0.746 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.401 0.599 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 -22.997 -4.450 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.342 4.342 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.034 3.966 11 C 0.015 3.985 12 C -0.015 4.015 13 C -0.180 4.180 14 C 0.006 3.994 15 H 0.124 0.876 16 N -0.373 5.373 17 C 0.300 3.700 18 O -0.409 6.409 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.215 4.215 22 C -0.218 4.218 23 C -0.037 4.037 24 O -0.251 6.251 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.236 0.764 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.137 0.863 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.483 -21.871 -5.097 23.117 hybrid contribution 0.533 0.415 0.587 0.895 sum -4.950 -21.455 -4.510 22.476 Atomic orbital electron populations 1.69843 1.05059 1.25392 1.56399 1.24816 0.95691 0.97626 1.02366 0.86080 0.78744 0.83428 0.77393 1.21677 1.20512 1.21573 1.18907 0.90375 0.81465 1.43477 0.90110 1.45482 1.05305 0.99155 1.82765 1.22319 0.88969 0.88997 0.96330 1.23398 0.97466 0.95183 0.82459 1.22688 0.96153 0.87430 0.95247 1.23126 1.00194 0.98489 0.96186 1.22757 0.99873 0.80867 0.95856 0.87602 1.45927 1.48207 1.07956 1.35175 1.20628 0.78221 0.90948 0.80201 1.90723 1.48806 1.59686 1.41729 1.21225 1.01120 0.92980 0.99668 1.22065 0.97054 0.96309 1.00521 1.23038 0.93015 1.04131 1.01358 1.23001 1.03586 0.93732 1.01516 1.23751 0.94066 0.88449 0.97411 1.88472 1.77613 1.39636 1.19406 0.93649 0.94123 0.91457 0.93610 0.94026 0.90242 0.89151 0.76445 0.88411 0.88753 0.86306 0.88832 0.88720 0.88689 0.88789 0.89676 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.25 11.82 55.49 0.66 -27.60 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.84 29.56 -169.99 -5.02 17.81 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.21 -6.29 10.73 -15.06 -0.16 -6.45 16 8 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 9 N -0.60 -16.17 3.77 -184.61 -0.70 -16.86 16 10 C 0.16 3.88 6.70 -7.94 -0.05 3.82 16 11 C 0.06 1.09 1.75 -90.45 -0.16 0.93 16 12 C 0.11 2.35 8.20 -8.08 -0.07 2.28 16 13 C -0.14 -1.93 6.03 -25.07 -0.15 -2.08 16 14 C 0.11 1.50 3.37 -65.54 -0.22 1.28 16 15 H 0.11 1.65 7.74 -51.93 -0.40 1.24 16 16 N -0.72 -7.17 5.24 -51.49 -0.27 -7.44 16 17 C 0.51 5.71 7.83 -10.98 -0.09 5.63 16 18 O -0.53 -8.33 15.31 5.56 0.09 -8.25 16 19 C -0.11 -0.80 5.98 -27.88 -0.17 -0.97 16 20 C -0.14 -1.20 5.41 -90.62 -0.49 -1.69 16 21 C -0.18 -1.33 10.18 -26.73 -0.27 -1.60 16 22 C -0.18 -1.19 10.25 -26.73 -0.27 -1.46 16 23 C 0.04 0.64 7.49 38.22 0.29 0.93 16 24 O -0.33 -6.84 11.18 -35.23 -0.39 -7.23 16 25 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.04 0.97 7.95 -51.93 -0.41 0.56 16 27 H 0.07 1.85 7.60 -51.93 -0.39 1.45 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.08 0.88 7.97 -51.93 -0.41 0.46 16 31 H 0.09 1.18 7.81 -51.93 -0.41 0.78 16 32 H 0.40 2.68 8.51 -40.82 -0.35 2.33 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.52 7.87 -51.93 -0.41 0.11 16 35 H 0.12 1.27 7.31 -51.93 -0.38 0.89 16 36 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -35.41 339.68 -8.94 -44.36 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.51 Total: -0.20 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.91 Total: 0.29 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.31 Total: -51.90 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.31 Total: -15.48 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.41 -8.94 -44.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053719084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.273 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds