Wall clock time and date at job start Tue Mar 31 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00171 * 2 1 4 4 H 1.48493 * 109.47229 * 85.02406 * 3 2 1 5 5 H 1.48503 * 109.46902 * 205.02047 * 3 2 1 6 6 H 1.48495 * 109.47086 * 325.01428 * 3 2 1 7 7 C 1.38815 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99442 * 186.41624 * 7 2 1 9 9 N 1.36927 * 120.00379 * 6.41318 * 7 2 1 10 10 C 1.47213 * 135.97368 * 6.11811 * 9 7 2 11 11 C 1.52977 * 87.69448 * 153.61366 * 10 9 7 12 12 C 1.47212 * 135.97634 * 186.48128 * 9 7 2 13 13 C 1.53658 * 115.11773 * 140.89856 * 11 10 9 14 14 C 1.55487 * 101.96709 * 111.47494 * 13 11 10 15 15 H 1.09002 * 111.10769 * 275.54329 * 14 13 11 16 16 N 1.46507 * 111.14134 * 151.44774 * 14 13 11 17 17 C 1.34772 * 119.99889 * 161.86905 * 16 14 13 18 18 O 1.21278 * 120.00197 * 359.97438 * 17 16 14 19 19 C 1.50706 * 119.99724 * 180.02562 * 17 16 14 20 20 C 1.52995 * 109.46785 * 179.97438 * 19 17 16 21 21 C 1.53005 * 117.49709 * 243.61920 * 20 19 17 22 22 C 1.53001 * 60.00086 * 252.51039 * 21 20 19 23 23 C 1.55018 * 101.04453 * 33.48888 * 14 13 11 24 24 O 1.42394 * 116.32169 * 269.47456 * 11 10 9 25 25 H 0.96996 * 119.99453 * 359.97438 * 1 2 3 26 26 H 1.09006 * 113.49648 * 268.29397 * 10 9 7 27 27 H 1.09004 * 113.49844 * 38.82835 * 10 9 7 28 28 H 1.09001 * 113.50018 * 321.17387 * 12 9 7 29 29 H 1.09000 * 113.50073 * 91.64022 * 12 9 7 30 30 H 1.08999 * 110.92919 * 229.64715 * 13 11 10 31 31 H 1.09002 * 110.93072 * 353.30768 * 13 11 10 32 32 H 0.97000 * 119.99688 * 341.87262 * 16 14 13 33 33 H 1.08996 * 109.46589 * 299.99176 * 19 17 16 34 34 H 1.08999 * 109.47022 * 59.99712 * 19 17 16 35 35 H 1.09000 * 115.55536 * 29.32580 * 20 19 17 36 36 H 1.08999 * 117.49820 * 359.97438 * 21 20 19 37 37 H 1.08996 * 117.50152 * 145.02639 * 21 20 19 38 38 H 1.08995 * 117.50111 * 252.51138 * 22 21 20 39 39 H 1.09001 * 117.51870 * 107.47566 * 22 21 20 40 40 H 1.09002 * 110.29986 * 205.04598 * 23 14 13 41 41 H 1.09005 * 110.29921 * 82.89928 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3926 2.1071 1.3947 5 1 3.5965 1.4119 -0.5922 6 1 1.5044 2.6199 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3319 -2.3844 -0.1314 10 6 -0.0600 -2.7820 -0.3988 11 6 0.4896 -4.0826 -0.9873 12 6 1.6740 -3.8145 -0.0616 13 6 -0.3266 -5.3427 -0.6600 14 6 -0.9145 -5.7162 -2.0501 15 1 -1.8290 -5.1585 -2.2522 16 7 -1.1462 -7.1590 -2.1556 17 6 -1.9707 -7.6413 -3.1062 18 8 -2.5213 -6.8811 -3.8741 19 6 -2.2094 -9.1254 -3.2143 20 6 -3.1778 -9.4036 -4.3657 21 6 -4.5302 -10.0280 -4.0160 22 6 -3.4583 -10.8666 -4.7151 23 6 0.2335 -5.2650 -2.9890 24 8 0.7701 -4.0751 -2.3833 25 1 -0.4849 0.8401 0.0004 26 1 -0.6511 -2.9296 0.5051 27 1 -0.5598 -2.1485 -1.1317 28 1 2.6386 -4.0531 -0.5097 29 1 1.5543 -4.2420 0.9339 30 1 0.3179 -6.1371 -0.2835 31 1 -1.1213 -5.1181 0.0514 32 1 -0.7061 -7.7670 -1.5411 33 1 -1.2635 -9.6326 -3.4042 34 1 -2.6384 -9.4933 -2.2822 35 1 -3.1514 -8.6864 -5.1860 36 1 -4.7298 -10.2410 -2.9658 37 1 -5.3937 -9.7216 -4.6063 38 1 -3.6166 -11.1117 -5.7652 39 1 -2.9524 -11.6308 -4.1250 40 1 -0.1560 -5.0413 -3.9821 41 1 0.9998 -6.0380 -3.0478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053719084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:13 Heat of formation + Delta-G solvation = -19.044170 kcal Electronic energy + Delta-G solvation = -21776.560696 eV Core-core repulsion = 18465.379148 eV Total energy + Delta-G solvation = -3311.181548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64606 -40.55623 -38.20115 -37.68528 -35.64460 -34.21034 -32.16421 -30.48035 -29.31331 -27.35540 -26.55866 -24.07220 -23.22284 -23.05743 -21.99394 -20.98940 -20.59782 -18.79790 -18.30394 -17.66704 -17.11816 -16.62809 -16.38313 -16.29841 -16.02695 -15.47818 -14.99803 -14.95218 -14.83757 -14.70188 -14.34950 -13.57478 -13.44448 -13.39573 -13.11738 -12.80811 -12.75878 -12.57294 -12.36331 -12.28306 -12.26081 -11.77142 -11.66613 -11.35989 -11.27795 -10.97679 -10.91495 -10.72823 -10.32202 -10.07520 -8.95427 -7.94607 -5.25518 1.42360 1.45887 1.54970 1.65433 2.04488 2.45974 2.80633 2.97315 3.27440 3.32706 3.57888 3.59957 3.76009 3.79336 3.81023 4.06127 4.09744 4.16722 4.23323 4.58699 4.64808 4.65772 4.71771 4.74551 4.82544 4.84408 4.85126 4.88424 4.91685 4.99994 5.09241 5.15455 5.19265 5.30674 5.36833 5.45718 5.48013 5.89028 6.28429 6.58959 6.87801 7.30075 7.57527 8.58590 9.25063 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.050120 B = 0.002959 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.520275 B = 9459.413751 C = 9598.452121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 0.983 3.017 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.295 1.295 7 C -0.228 4.228 8 H 0.085 0.915 9 N -0.640 5.640 10 C 0.153 3.847 11 C 0.076 3.924 12 C 0.114 3.886 13 C -0.123 4.123 14 C 0.123 3.877 15 H 0.078 0.922 16 N -0.701 5.701 17 C 0.510 3.490 18 O -0.587 6.587 19 C -0.098 4.098 20 C -0.163 4.163 21 C -0.186 4.186 22 C -0.163 4.163 23 C 0.039 3.961 24 O -0.373 6.373 25 H 0.248 0.752 26 H 0.042 0.958 27 H 0.018 0.982 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.423 0.577 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -26.252 -3.383 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.810 3.190 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.222 1.222 7 C -0.356 4.356 8 H 0.103 0.897 9 N -0.366 5.366 10 C 0.027 3.973 11 C 0.035 3.965 12 C -0.011 4.011 13 C -0.161 4.161 14 C 0.017 3.983 15 H 0.096 0.904 16 N -0.356 5.356 17 C 0.298 3.702 18 O -0.466 6.466 19 C -0.137 4.137 20 C -0.182 4.182 21 C -0.223 4.223 22 C -0.200 4.200 23 C -0.039 4.039 24 O -0.291 6.291 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.262 0.738 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.345 -25.205 -4.006 25.889 hybrid contribution 0.177 1.375 0.179 1.398 sum -4.168 -23.830 -3.826 24.493 Atomic orbital electron populations 1.70037 1.06633 1.25683 1.58136 1.25728 0.96632 1.01212 1.02948 0.85002 0.77716 0.78765 0.77513 1.20775 1.19218 1.22167 1.19335 0.91002 0.83056 1.42234 0.89706 1.45890 1.06633 1.00899 1.83210 1.22362 0.88064 0.91227 0.95664 1.23030 0.96450 0.95087 0.81942 1.22897 0.97001 0.84166 0.97045 1.23045 1.00229 0.96611 0.96245 1.22340 0.97918 0.82854 0.95198 0.90385 1.45700 1.47983 1.06486 1.35390 1.21418 0.77138 0.92440 0.79170 1.90717 1.50828 1.61318 1.43773 1.21258 1.02329 0.89742 1.00356 1.22021 0.98459 0.97130 1.00560 1.23135 0.92569 1.04401 1.02206 1.23084 1.02251 0.92764 1.01897 1.23929 0.95464 0.87551 0.96925 1.88424 1.78065 1.42382 1.20247 0.94305 0.93991 0.96353 0.93193 0.90858 0.85840 0.88138 0.73823 0.85560 0.85945 0.89529 0.87486 0.89618 0.88632 0.86606 0.90988 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.00 11.82 21.65 0.26 -60.75 16 2 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 47.95 29.56 68.60 2.03 49.98 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 7 C -0.23 -13.57 10.73 84.04 0.90 -12.66 16 8 H 0.09 4.79 7.84 -2.91 -0.02 4.77 16 9 N -0.64 -34.86 3.77 -739.06 -2.79 -37.65 16 10 C 0.15 7.63 6.70 83.47 0.56 8.19 16 11 C 0.08 2.88 1.75 -10.68 -0.02 2.86 16 12 C 0.11 4.61 8.20 83.38 0.68 5.30 16 13 C -0.12 -2.98 6.03 31.67 0.19 -2.78 16 14 C 0.12 3.12 3.37 46.54 0.16 3.28 16 15 H 0.08 2.46 7.74 -2.39 -0.02 2.44 16 16 N -0.70 -11.72 5.24 -435.23 -2.28 -14.00 16 17 C 0.51 10.37 7.83 87.66 0.69 11.05 16 18 O -0.59 -18.55 15.31 -3.02 -0.05 -18.59 16 19 C -0.10 -1.09 5.98 29.85 0.18 -0.92 16 20 C -0.16 -2.53 5.41 -10.79 -0.06 -2.59 16 21 C -0.19 -2.46 10.18 30.60 0.31 -2.15 16 22 C -0.16 -1.72 10.25 30.60 0.31 -1.40 16 23 C 0.04 1.16 7.49 72.67 0.54 1.71 16 24 O -0.37 -15.31 11.18 -148.98 -1.67 -16.97 16 25 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.04 2.05 7.95 -2.38 -0.02 2.03 16 27 H 0.02 1.06 7.60 -2.38 -0.02 1.04 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 2.56 8.13 -2.39 -0.02 2.54 16 30 H 0.12 2.00 7.97 -2.39 -0.02 1.98 16 31 H 0.10 2.33 7.81 -2.39 -0.02 2.31 16 32 H 0.42 3.47 8.51 -92.71 -0.79 2.68 16 33 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.12 0.75 7.87 -2.39 -0.02 0.73 16 35 H 0.09 1.92 7.31 -2.39 -0.02 1.90 16 36 H 0.11 1.11 8.03 -2.39 -0.02 1.09 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -82.66 339.68 0.66 -82.01 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.23 Total: 10.00 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 4.92 Total: 5.98 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.81 Total: -112.40 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.71 Total: -35.57 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -82.66 0.66 -82.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053719084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.964 kcal (2) G-P(sol) polarization free energy of solvation -82.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds