Wall clock time and date at job start Tue Mar 31 2020 01:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99873 * 2 1 4 4 H 1.48501 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47039 * 299.99579 * 3 2 1 6 6 H 1.48504 * 109.47183 * 59.99604 * 3 2 1 7 7 C 1.38816 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.65441 * 0.02562 * 9 7 2 11 11 C 1.54318 * 107.27001 * 178.90690 * 10 9 7 12 12 H 1.09000 * 110.71938 * 96.35245 * 11 10 9 13 13 O 1.42903 * 110.71964 * 219.44056 * 11 10 9 14 14 C 1.55155 * 103.10829 * 337.89518 * 11 10 9 15 15 H 1.08998 * 111.00699 * 277.34206 * 14 11 10 16 16 N 1.46494 * 111.00449 * 153.48555 * 14 11 10 17 17 C 1.34782 * 119.99807 * 155.00257 * 16 14 11 18 18 O 1.21285 * 119.99915 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00123 * 180.02562 * 17 16 14 20 20 C 1.53893 * 113.58939 * 277.66640 * 19 17 16 21 21 C 1.53256 * 86.88078 * 220.42581 * 20 19 17 22 22 C 1.52467 * 128.58368 * 165.11173 * 21 20 19 23 23 C 1.52462 * 128.58452 * 245.04964 * 21 20 19 24 24 C 1.53247 * 87.69515 * 25.08331 * 21 20 19 25 25 C 1.47431 * 125.64289 * 179.97438 * 9 7 2 26 26 H 0.97004 * 120.00608 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.88077 * 59.49204 * 10 9 7 28 28 H 1.08994 * 110.00952 * 298.39847 * 10 9 7 29 29 H 0.96700 * 114.00311 * 296.16377 * 13 11 10 30 30 H 0.96997 * 120.00555 * 335.00358 * 16 14 11 31 31 H 1.09001 * 112.83013 * 48.88304 * 19 17 16 32 32 H 1.08997 * 113.64568 * 334.92332 * 20 19 17 33 33 H 1.08998 * 113.64800 * 105.92632 * 20 19 17 34 34 H 1.09001 * 117.51515 * 225.05121 * 22 21 20 35 35 H 1.09004 * 117.51133 * 10.14618 * 22 21 20 36 36 H 1.08998 * 117.51277 * 349.85493 * 23 21 20 37 37 H 1.09004 * 117.51314 * 134.95400 * 23 21 20 38 38 H 1.08999 * 113.64802 * 220.41717 * 24 21 20 39 39 H 1.09001 * 113.65259 * 89.41442 * 24 21 20 40 40 H 1.08998 * 110.36636 * 322.99796 * 25 9 7 41 41 H 1.08998 * 110.36754 * 85.21408 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4483 -4.0441 -0.0282 12 1 -0.6354 -4.4178 0.9785 13 8 -1.5622 -4.3157 -0.8813 14 6 0.8515 -4.6601 -0.6098 15 1 0.8581 -4.6027 -1.6982 16 7 1.0253 -6.0427 -0.1579 17 6 1.7548 -6.9053 -0.8930 18 8 2.2678 -6.5366 -1.9284 19 6 1.9331 -8.3277 -0.4285 20 6 3.0506 -8.4991 0.6157 21 6 3.4274 -9.7884 -0.1221 22 6 4.7057 -10.6113 -0.0064 23 6 3.3578 -11.2263 0.3800 24 6 2.7911 -9.1826 -1.3778 25 6 1.9335 -3.7311 0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 -0.5570 -2.0519 -0.8842 28 1 -0.5574 -2.0844 0.8998 29 1 -2.3925 -3.9205 -0.5819 30 1 0.6154 -6.3375 0.6703 31 1 0.9931 -8.8010 -0.1448 32 1 3.8179 -7.7265 0.5656 33 1 2.6815 -8.6663 1.6275 34 1 5.1692 -10.9544 -0.9314 35 1 5.3946 -10.3606 0.8003 36 1 3.1601 -11.3802 1.4407 37 1 2.9347 -11.9740 -0.2909 38 1 2.2141 -9.8978 -1.9640 39 1 3.4862 -8.6003 -1.9827 40 1 2.8334 -3.7402 -0.6144 41 1 2.1676 -4.0416 1.0188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077646578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:05 Heat of formation + Delta-G solvation = -8.864113 kcal Electronic energy + Delta-G solvation = -22052.529808 eV Core-core repulsion = 18741.789700 eV Total energy + Delta-G solvation = -3310.740108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45629 -38.80544 -37.56508 -35.05808 -33.99050 -33.72672 -31.65549 -28.48789 -27.17646 -25.92277 -25.02974 -23.80951 -22.68530 -20.61968 -20.35000 -19.93333 -18.53155 -17.35177 -17.01316 -16.54252 -15.81307 -15.61322 -15.34176 -14.77932 -14.34132 -14.27773 -13.95784 -13.34872 -12.76213 -12.67155 -12.61220 -12.36171 -12.16268 -12.04698 -11.74500 -11.73479 -11.39367 -11.25391 -10.88888 -10.82889 -10.54212 -10.47482 -10.13562 -9.90907 -9.90259 -9.83971 -9.59895 -9.25119 -8.80246 -8.61951 -6.91657 -5.76835 -3.11275 2.81609 3.29608 3.38712 3.44486 3.46898 3.58512 4.13120 4.37464 4.44197 4.51965 4.61283 4.63748 4.68909 5.08909 5.18679 5.23864 5.37806 5.44061 5.44932 5.56457 5.59624 5.60774 5.64542 5.67315 5.82088 5.83527 5.88610 6.05013 6.09626 6.14132 6.19379 6.54788 6.62259 6.91953 7.32310 7.46394 7.70953 7.77474 8.12246 8.16920 8.47221 9.14685 9.74802 10.37964 11.35023 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.003614 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.924932 B = 7746.753600 C = 8376.127476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.068 3.932 12 H 0.056 0.944 13 O -0.564 6.564 14 C 0.137 3.863 15 H 0.104 0.896 16 N -0.713 5.713 17 C 0.522 3.478 18 O -0.539 6.539 19 C -0.131 4.131 20 C -0.081 4.081 21 C -0.163 4.163 22 C -0.166 4.166 23 C -0.152 4.152 24 C -0.075 4.075 25 C 0.131 3.869 26 H 0.253 0.747 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.376 0.624 30 H 0.397 0.603 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -19.983 3.446 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.074 0.926 13 O -0.369 6.369 14 C 0.031 3.969 15 H 0.122 0.878 16 N -0.363 5.363 17 C 0.308 3.692 18 O -0.415 6.415 19 C -0.153 4.153 20 C -0.119 4.119 21 C -0.163 4.163 22 C -0.203 4.203 23 C -0.189 4.189 24 C -0.113 4.113 25 C 0.003 3.997 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.223 0.777 30 H 0.230 0.770 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.067 0.933 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.389 -19.797 2.348 20.078 hybrid contribution -0.320 1.103 0.844 1.425 sum 2.069 -18.694 3.192 19.077 Atomic orbital electron populations 1.69932 1.04938 1.25094 1.57182 1.24820 0.95788 0.97794 1.02018 0.85990 0.78770 0.83445 0.77240 1.20404 1.21651 1.21721 1.19144 0.90593 0.82072 1.43793 0.90082 1.44249 1.01215 0.99918 1.87394 1.21824 0.85441 0.87841 1.02144 1.23464 0.85617 0.98513 0.91579 0.92575 1.86467 1.19573 1.77623 1.53208 1.22274 0.94322 0.79313 1.00972 0.87784 1.45925 1.52988 1.11327 1.26067 1.20401 0.77988 0.86997 0.83860 1.90701 1.48021 1.78779 1.24046 1.22610 0.99846 0.93066 0.99735 1.22403 0.96790 0.95581 0.97090 1.22170 1.02379 0.92292 0.99459 1.22798 0.90662 1.03677 1.03164 1.22784 1.00638 0.93946 1.01535 1.22376 0.97566 0.96953 0.94363 1.21873 0.94870 0.85706 0.97233 0.93705 0.92146 0.93323 0.77692 0.76955 0.87014 0.89035 0.90629 0.88668 0.88687 0.88638 0.88637 0.91072 0.88153 0.93272 0.95926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.31 55.49 0.57 -26.27 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.47 3.40 -169.94 -0.58 -16.05 16 10 C 0.15 3.65 5.15 -3.07 -0.02 3.63 16 11 C 0.07 1.27 3.97 -24.90 -0.10 1.17 16 12 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 13 O -0.56 -9.89 13.39 -35.23 -0.47 -10.36 16 14 C 0.14 2.61 3.16 -65.67 -0.21 2.40 16 15 H 0.10 2.32 7.54 -51.93 -0.39 1.93 16 16 N -0.71 -10.65 5.21 -51.63 -0.27 -10.92 16 17 C 0.52 7.98 7.35 -10.99 -0.08 7.90 16 18 O -0.54 -10.58 15.54 5.55 0.09 -10.50 16 19 C -0.13 -1.43 4.15 -90.85 -0.38 -1.81 16 20 C -0.08 -0.79 7.65 -26.13 -0.20 -0.98 16 21 C -0.16 -1.50 3.08 -154.80 -0.48 -1.98 16 22 C -0.17 -1.35 10.53 -26.94 -0.28 -1.64 16 23 C -0.15 -1.14 10.53 -26.95 -0.28 -1.42 16 24 C -0.08 -0.81 7.42 -26.14 -0.19 -1.01 16 25 C 0.13 2.82 6.94 -2.41 -0.02 2.80 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 28 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 29 H 0.38 5.03 9.12 45.56 0.42 5.44 16 30 H 0.40 4.68 8.57 -40.82 -0.35 4.33 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.28 7.42 -51.93 -0.39 0.90 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -33.27 337.36 -8.75 -42.02 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.67 Total: 7.68 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.49 Total: 2.18 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.27 Total: -53.24 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.39 Total: -20.86 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.27 -8.75 -42.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077646578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.152 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds