Wall clock time and date at job start Tue Mar 31 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99873 * 2 1 4 4 H 1.48501 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47039 * 299.99579 * 3 2 1 6 6 H 1.48504 * 109.47183 * 59.99604 * 3 2 1 7 7 C 1.38816 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.65441 * 0.02562 * 9 7 2 11 11 C 1.54318 * 107.27001 * 178.90690 * 10 9 7 12 12 H 1.09000 * 110.71938 * 96.35245 * 11 10 9 13 13 O 1.42903 * 110.71964 * 219.44056 * 11 10 9 14 14 C 1.55155 * 103.10829 * 337.89518 * 11 10 9 15 15 H 1.08998 * 111.00699 * 277.34206 * 14 11 10 16 16 N 1.46494 * 111.00449 * 153.48555 * 14 11 10 17 17 C 1.34782 * 119.99807 * 155.00257 * 16 14 11 18 18 O 1.21285 * 119.99915 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00123 * 180.02562 * 17 16 14 20 20 C 1.53893 * 113.58939 * 277.66640 * 19 17 16 21 21 C 1.53256 * 86.88078 * 220.42581 * 20 19 17 22 22 C 1.52467 * 128.58368 * 165.11173 * 21 20 19 23 23 C 1.52462 * 128.58452 * 245.04964 * 21 20 19 24 24 C 1.53247 * 87.69515 * 25.08331 * 21 20 19 25 25 C 1.47431 * 125.64289 * 179.97438 * 9 7 2 26 26 H 0.97004 * 120.00608 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.88077 * 59.49204 * 10 9 7 28 28 H 1.08994 * 110.00952 * 298.39847 * 10 9 7 29 29 H 0.96700 * 114.00311 * 296.16377 * 13 11 10 30 30 H 0.96997 * 120.00555 * 335.00358 * 16 14 11 31 31 H 1.09001 * 112.83013 * 48.88304 * 19 17 16 32 32 H 1.08997 * 113.64568 * 334.92332 * 20 19 17 33 33 H 1.08998 * 113.64800 * 105.92632 * 20 19 17 34 34 H 1.09001 * 117.51515 * 225.05121 * 22 21 20 35 35 H 1.09004 * 117.51133 * 10.14618 * 22 21 20 36 36 H 1.08998 * 117.51277 * 349.85493 * 23 21 20 37 37 H 1.09004 * 117.51314 * 134.95400 * 23 21 20 38 38 H 1.08999 * 113.64802 * 220.41717 * 24 21 20 39 39 H 1.09001 * 113.65259 * 89.41442 * 24 21 20 40 40 H 1.08998 * 110.36636 * 322.99796 * 25 9 7 41 41 H 1.08998 * 110.36754 * 85.21408 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4483 -4.0441 -0.0282 12 1 -0.6354 -4.4178 0.9785 13 8 -1.5622 -4.3157 -0.8813 14 6 0.8515 -4.6601 -0.6098 15 1 0.8581 -4.6027 -1.6982 16 7 1.0253 -6.0427 -0.1579 17 6 1.7548 -6.9053 -0.8930 18 8 2.2678 -6.5366 -1.9284 19 6 1.9331 -8.3277 -0.4285 20 6 3.0506 -8.4991 0.6157 21 6 3.4274 -9.7884 -0.1221 22 6 4.7057 -10.6113 -0.0064 23 6 3.3578 -11.2263 0.3800 24 6 2.7911 -9.1826 -1.3778 25 6 1.9335 -3.7311 0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 -0.5570 -2.0519 -0.8842 28 1 -0.5574 -2.0844 0.8998 29 1 -2.3925 -3.9205 -0.5819 30 1 0.6154 -6.3375 0.6703 31 1 0.9931 -8.8010 -0.1448 32 1 3.8179 -7.7265 0.5656 33 1 2.6815 -8.6663 1.6275 34 1 5.1692 -10.9544 -0.9314 35 1 5.3946 -10.3606 0.8003 36 1 3.1601 -11.3802 1.4407 37 1 2.9347 -11.9740 -0.2909 38 1 2.2141 -9.8978 -1.9640 39 1 3.4862 -8.6003 -1.9827 40 1 2.8334 -3.7402 -0.6144 41 1 2.1676 -4.0416 1.0188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077646578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:04 Heat of formation + Delta-G solvation = -33.680794 kcal Electronic energy + Delta-G solvation = -22053.605940 eV Core-core repulsion = 18741.789700 eV Total energy + Delta-G solvation = -3311.816240 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52208 -40.08615 -38.92026 -36.69020 -35.55267 -34.52554 -33.55965 -30.28777 -28.89804 -26.78060 -26.62403 -25.19810 -23.27235 -22.40648 -21.91078 -21.22163 -19.29008 -19.08873 -18.46236 -17.94356 -17.37376 -16.58270 -16.45563 -16.04075 -15.85903 -15.70235 -15.34904 -14.94074 -14.49350 -14.23979 -13.81990 -13.60412 -13.39182 -13.18043 -13.17836 -13.00495 -12.78213 -12.73092 -12.44012 -12.28207 -12.06707 -11.91117 -11.56020 -11.32495 -11.22114 -11.03905 -10.79738 -10.69766 -10.46853 -10.15364 -8.98912 -7.90761 -5.28119 1.44638 1.46179 1.56468 1.60768 2.08225 2.46566 2.88028 3.11659 3.30234 3.41339 3.54274 3.55551 3.69249 3.81752 3.92482 3.97157 4.04901 4.13886 4.27959 4.43200 4.45192 4.54390 4.78706 4.79626 4.81608 4.84414 4.86475 5.00655 5.04023 5.07581 5.27569 5.33357 5.34624 5.37771 5.42063 5.48866 5.64238 6.11506 6.57759 6.85202 7.02851 7.27996 7.67118 8.29645 9.19150 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.003614 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.924932 B = 7746.753600 C = 8376.127476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.081 0.919 9 N -0.622 5.622 10 C 0.161 3.839 11 C 0.092 3.908 12 H 0.096 0.904 13 O -0.570 6.570 14 C 0.151 3.849 15 H 0.068 0.932 16 N -0.698 5.698 17 C 0.518 3.482 18 O -0.589 6.589 19 C -0.121 4.121 20 C -0.076 4.076 21 C -0.172 4.172 22 C -0.173 4.173 23 C -0.133 4.133 24 C -0.083 4.083 25 C 0.132 3.868 26 H 0.250 0.750 27 H 0.019 0.981 28 H 0.028 0.972 29 H 0.396 0.604 30 H 0.417 0.583 31 H 0.144 0.856 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.030 0.970 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 -22.141 5.185 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.035 3.965 11 C 0.031 3.969 12 H 0.113 0.887 13 O -0.378 6.378 14 C 0.044 3.956 15 H 0.086 0.914 16 N -0.350 5.350 17 C 0.306 3.694 18 O -0.469 6.469 19 C -0.142 4.142 20 C -0.114 4.114 21 C -0.172 4.172 22 C -0.210 4.210 23 C -0.170 4.170 24 C -0.120 4.120 25 C 0.005 3.995 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.246 0.754 30 H 0.255 0.745 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.194 -22.000 4.125 22.491 hybrid contribution -0.242 1.746 0.249 1.780 sum 1.952 -20.254 4.374 20.813 Atomic orbital electron populations 1.70132 1.06159 1.25506 1.57823 1.25662 0.96759 1.00988 1.02050 0.84971 0.78090 0.79123 0.76886 1.19222 1.21925 1.21274 1.19486 0.91021 0.83488 1.43745 0.90119 1.44523 1.02298 1.00825 1.87359 1.21638 0.84326 0.91415 0.99152 1.23166 0.85758 0.94450 0.93494 0.88663 1.86432 1.20276 1.77499 1.53560 1.21742 0.93860 0.81296 0.98746 0.91409 1.45716 1.53012 1.09382 1.26869 1.21289 0.76568 0.88586 0.82932 1.90688 1.49874 1.79927 1.26385 1.22712 1.01670 0.89601 1.00191 1.22363 0.95657 0.95303 0.98050 1.22086 1.03791 0.93208 0.98136 1.22902 0.91010 1.03537 1.03528 1.22903 0.99197 0.92328 1.02574 1.22341 0.97503 0.97126 0.95063 1.21958 0.94849 0.84670 0.98015 0.94106 0.96228 0.95424 0.75385 0.74495 0.83841 0.90919 0.88076 0.88683 0.88145 0.87079 0.87718 0.90083 0.91073 0.95131 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.44 10.31 21.65 0.22 -56.22 16 2 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 3 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 7 C -0.25 -14.29 10.28 84.03 0.86 -13.42 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -32.78 3.40 -691.58 -2.35 -35.13 16 10 C 0.16 7.81 5.15 86.73 0.45 8.25 16 11 C 0.09 3.29 3.97 31.78 0.13 3.42 16 12 H 0.10 2.76 8.00 -2.39 -0.02 2.74 16 13 O -0.57 -19.19 13.39 -148.98 -1.99 -21.18 16 14 C 0.15 5.72 3.16 46.46 0.15 5.87 16 15 H 0.07 3.11 7.54 -2.39 -0.02 3.10 16 16 N -0.70 -19.65 5.21 -435.63 -2.27 -21.92 16 17 C 0.52 15.42 7.35 87.65 0.64 16.07 16 18 O -0.59 -23.76 15.54 -3.05 -0.05 -23.81 16 19 C -0.12 -2.37 4.15 -10.94 -0.05 -2.41 16 20 C -0.08 -1.29 7.65 30.98 0.24 -1.05 16 21 C -0.17 -2.77 3.08 -52.37 -0.16 -2.93 16 22 C -0.17 -2.44 10.53 30.46 0.32 -2.12 16 23 C -0.13 -1.52 10.53 30.46 0.32 -1.20 16 24 C -0.08 -1.70 7.42 30.98 0.23 -1.47 16 25 C 0.13 5.73 6.94 86.93 0.60 6.33 16 26 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 27 H 0.02 1.10 7.30 -2.39 -0.02 1.08 16 28 H 0.03 1.44 7.50 -2.39 -0.02 1.42 16 29 H 0.40 9.89 9.12 -74.06 -0.68 9.21 16 30 H 0.42 8.37 8.57 -92.71 -0.79 7.57 16 31 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 33 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.88 7.42 -2.39 -0.02 1.86 16 40 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -75.21 337.36 -0.64 -75.84 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -0.43 Total: 21.97 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 4.20 Total: 12.28 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -4.39 Total: -113.26 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -2.04 Total: -44.99 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -75.21 -0.64 -75.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077646578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.164 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds