Wall clock time and date at job start Tue Mar 31 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48502 * 109.47258 * 239.99668 * 3 2 1 5 5 H 1.48504 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47544 * 119.99267 * 3 2 1 7 7 C 1.38816 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99938 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64698 * 359.97229 * 9 7 2 11 11 C 1.54330 * 107.27093 * 178.97778 * 10 9 7 12 12 H 1.09006 * 110.86580 * 96.24059 * 11 10 9 13 13 O 1.42888 * 110.72223 * 219.44377 * 11 10 9 14 14 C 1.55158 * 102.94056 * 337.81035 * 11 10 9 15 15 H 1.09002 * 111.00366 * 277.42433 * 14 11 10 16 16 N 1.46504 * 111.00367 * 153.61244 * 14 11 10 17 17 C 1.34775 * 119.99904 * 158.17498 * 16 14 11 18 18 O 1.21277 * 120.00149 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99910 * 179.97438 * 17 16 14 20 20 H 1.09002 * 115.55800 * 325.58581 * 19 17 16 21 21 C 1.53123 * 117.51127 * 111.32421 * 19 17 16 22 22 C 1.52455 * 117.51144 * 179.84945 * 19 17 16 23 23 C 1.53263 * 128.58350 * 134.95275 * 22 19 17 24 24 C 1.53886 * 86.88313 * 194.89096 * 23 22 19 25 25 C 1.53260 * 128.58632 * 10.15617 * 22 19 17 26 26 C 1.47523 * 125.63741 * 180.02562 * 9 7 2 27 27 H 0.97002 * 120.00021 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.88478 * 59.56428 * 10 9 7 29 29 H 1.08997 * 110.01216 * 298.46924 * 10 9 7 30 30 H 0.96707 * 114.00289 * 293.52638 * 13 11 10 31 31 H 0.96994 * 119.99654 * 338.17780 * 16 14 11 32 32 H 1.08998 * 117.50857 * 214.89814 * 21 19 17 33 33 H 1.09003 * 117.51048 * 359.97438 * 21 19 17 34 34 H 1.09001 * 113.64517 * 309.38663 * 23 22 19 35 35 H 1.08997 * 113.64710 * 80.39093 * 23 22 19 36 36 H 1.09011 * 113.58549 * 270.39563 * 24 23 22 37 37 H 1.08997 * 113.66485 * 139.58728 * 24 23 22 38 38 H 1.09002 * 113.64316 * 279.60304 * 25 22 19 39 39 H 1.08997 * 113.64770 * 50.51862 * 25 22 19 40 40 H 1.09001 * 110.37251 * 85.27028 * 26 9 7 41 41 H 1.09004 * 110.41044 * 322.91310 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4485 -4.0442 -0.0257 12 1 -0.6334 -4.4201 0.9806 13 8 -1.5628 -4.3163 -0.8778 14 6 0.8519 -4.6564 -0.6101 15 1 0.8569 -4.5969 -1.6985 16 7 1.0286 -6.0399 -0.1618 17 6 1.8111 -6.8817 -0.8658 18 8 2.3692 -6.4937 -1.8702 19 6 1.9933 -8.3046 -0.4043 20 1 2.0023 -8.4512 0.6758 21 6 1.3755 -9.4114 -1.2633 22 6 2.8877 -9.2086 -1.2452 23 6 3.9767 -10.1797 -0.7760 24 6 4.4581 -10.2138 -2.2373 25 6 3.8152 -8.8255 -2.4035 26 6 1.9341 -3.7320 0.0016 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5576 -2.0525 -0.8831 29 1 -0.5567 -2.0837 0.9009 30 1 -2.4006 -3.9549 -0.5573 31 1 0.5825 -6.3500 0.6417 32 1 0.9787 -10.2862 -0.7482 33 1 0.8370 -9.1100 -2.1618 34 1 4.6952 -9.7321 -0.0894 35 1 3.5880 -11.1342 -0.4213 36 1 3.9808 -10.9899 -2.8357 37 1 5.5431 -10.2073 -2.3407 38 1 3.2971 -8.6946 -3.3536 39 1 4.4877 -8.0000 -2.1704 40 1 2.1666 -4.0424 1.0203 41 1 2.8338 -3.7423 -0.6137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077749136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:10 Heat of formation + Delta-G solvation = -6.997953 kcal Electronic energy + Delta-G solvation = -22151.647492 eV Core-core repulsion = 18840.988307 eV Total energy + Delta-G solvation = -3310.659185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.32505 -38.80516 -37.51773 -35.05724 -33.95822 -33.70426 -31.63928 -28.45826 -27.13249 -25.76089 -24.83920 -23.54211 -23.15838 -20.61089 -20.33810 -19.94872 -18.43614 -17.28179 -17.00830 -16.51895 -15.82628 -15.33984 -15.31469 -14.72616 -14.40121 -14.11289 -14.00481 -13.26663 -12.76283 -12.66711 -12.56077 -12.38390 -12.09253 -12.03150 -11.66078 -11.59170 -11.43509 -11.24086 -10.89454 -10.79139 -10.44172 -10.19592 -10.17009 -9.92551 -9.83934 -9.82153 -9.61678 -9.24548 -8.78356 -8.60640 -6.90853 -5.75585 -3.10079 2.68600 3.27596 3.40672 3.44510 3.45959 3.69462 4.29645 4.45370 4.50727 4.63486 4.67078 4.67864 4.79433 5.07822 5.23662 5.24337 5.44825 5.44976 5.51668 5.58600 5.59532 5.68691 5.71091 5.75556 5.82891 5.84857 6.08232 6.10629 6.15784 6.21512 6.32978 6.56060 6.64085 6.92775 7.32955 7.46960 7.71676 7.79252 8.12026 8.18124 8.50298 9.15773 9.75788 10.39131 11.36168 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027223 B = 0.003773 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.292312 B = 7419.286092 C = 8154.903117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.069 3.931 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.140 3.860 15 H 0.102 0.898 16 N -0.713 5.713 17 C 0.542 3.458 18 O -0.534 6.534 19 C -0.177 4.177 20 H 0.121 0.879 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.098 4.098 24 C -0.143 4.143 25 C -0.082 4.082 26 C 0.131 3.869 27 H 0.254 0.746 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.376 0.624 31 H 0.397 0.603 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.023 0.977 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -19.970 1.199 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.034 3.966 15 H 0.120 0.880 16 N -0.363 5.363 17 C 0.328 3.672 18 O -0.410 6.410 19 C -0.199 4.199 20 H 0.139 0.861 21 C -0.160 4.160 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.180 4.180 25 C -0.120 4.120 26 C 0.003 3.997 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.223 0.777 31 H 0.230 0.770 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.041 0.959 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.135 -19.735 0.106 19.851 hybrid contribution -0.385 1.156 0.987 1.568 sum 1.751 -18.579 1.093 18.694 Atomic orbital electron populations 1.69912 1.04940 1.25316 1.57038 1.24813 0.95779 0.97772 1.01982 0.86139 0.78437 0.82852 0.77989 1.21029 1.21549 1.21106 1.19054 0.90541 0.82110 1.44047 0.90200 1.44260 1.01191 0.99898 1.87450 1.21809 0.85406 0.87800 1.02141 1.23460 0.85562 0.98545 0.91583 0.92527 1.86466 1.18765 1.79985 1.51613 1.22233 0.94369 0.79139 1.00838 0.87965 1.45876 1.49520 1.11682 1.29214 1.19571 0.78530 0.85798 0.83339 1.90699 1.47346 1.77538 1.25430 1.22167 1.08460 0.90150 0.99077 0.86115 1.22800 0.93920 0.98099 1.01198 1.22294 0.91430 0.99323 0.99695 1.22502 0.96206 0.97744 0.97119 1.22815 1.00422 0.98283 0.96473 1.22325 0.96631 0.96248 0.96765 1.21865 0.94925 0.85683 0.97224 0.93607 0.92132 0.93349 0.77709 0.76977 0.87793 0.88046 0.89610 0.91397 0.90281 0.91319 0.91280 0.89281 0.95926 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.31 55.49 0.57 -26.41 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.92 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.61 3.40 -169.98 -0.58 -16.18 16 10 C 0.15 3.70 5.15 -3.06 -0.02 3.68 16 11 C 0.07 1.28 3.97 -24.89 -0.10 1.18 16 12 H 0.06 0.93 8.00 -51.93 -0.42 0.51 16 13 O -0.56 -9.88 13.39 -35.23 -0.47 -10.35 16 14 C 0.14 2.69 3.09 -65.78 -0.20 2.49 16 15 H 0.10 2.28 7.63 -51.93 -0.40 1.89 16 16 N -0.71 -10.90 5.21 -51.72 -0.27 -11.17 16 17 C 0.54 8.51 7.61 -10.99 -0.08 8.43 16 18 O -0.53 -10.42 14.83 5.56 0.08 -10.34 16 19 C -0.18 -2.05 6.19 -91.99 -0.57 -2.62 16 20 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 21 C -0.12 -1.23 10.24 -26.88 -0.28 -1.50 16 22 C -0.13 -1.39 2.88 -154.73 -0.45 -1.83 16 23 C -0.10 -0.86 8.10 -26.13 -0.21 -1.07 16 24 C -0.14 -1.27 8.08 -25.81 -0.21 -1.48 16 25 C -0.08 -0.98 6.47 -26.13 -0.17 -1.15 16 26 C 0.13 2.85 6.94 -2.47 -0.02 2.84 16 27 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 29 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 30 H 0.38 4.99 9.12 45.56 0.42 5.40 16 31 H 0.40 4.83 8.54 -40.82 -0.35 4.49 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.20 8.04 -51.93 -0.42 0.78 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -33.22 336.18 -8.87 -42.10 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.70 Total: 8.06 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.55 Total: 2.01 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.27 Total: -53.77 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.39 Total: -20.69 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.22 -8.87 -42.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077749136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.101 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds