Wall clock time and date at job start Tue Mar 31 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00421 * 2 1 4 4 H 1.48499 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47129 * 299.99582 * 3 2 1 6 6 H 1.48508 * 109.47055 * 59.99529 * 3 2 1 7 7 C 1.38814 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00497 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64717 * 359.96972 * 9 7 2 11 11 C 1.54326 * 107.27035 * 178.96508 * 10 9 7 12 12 H 1.09005 * 110.86859 * 96.24348 * 11 10 9 13 13 O 1.42904 * 110.71697 * 219.44207 * 11 10 9 14 14 C 1.55155 * 102.94192 * 337.80537 * 11 10 9 15 15 H 1.08995 * 111.00598 * 277.39197 * 14 11 10 16 16 N 1.46505 * 111.00233 * 153.57385 * 14 11 10 17 17 C 1.34776 * 119.99826 * 154.99512 * 16 14 11 18 18 O 1.21282 * 120.00022 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00101 * 180.02562 * 17 16 14 20 20 H 1.08994 * 115.55966 * 34.31546 * 19 17 16 21 21 C 1.53000 * 117.49971 * 248.63055 * 19 17 16 22 22 C 1.52996 * 117.50169 * 180.02562 * 19 17 16 23 23 H 1.09005 * 117.51832 * 0.02562 * 22 19 17 24 24 C 1.53002 * 117.50032 * 214.98320 * 22 19 17 25 25 C 1.53002 * 117.49773 * 179.97438 * 24 22 19 26 26 C 1.53000 * 60.02940 * 252.51785 * 25 24 22 27 27 C 1.47426 * 125.64995 * 179.97438 * 9 7 2 28 28 H 0.97002 * 119.99563 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.88424 * 59.54802 * 10 9 7 30 30 H 1.09007 * 109.88439 * 298.38203 * 10 9 7 31 31 H 0.96697 * 113.99958 * 293.52037 * 13 11 10 32 32 H 0.97000 * 119.99960 * 335.00478 * 16 14 11 33 33 H 1.09000 * 117.50217 * 145.02253 * 21 19 17 34 34 H 1.09008 * 117.49877 * 359.97438 * 21 19 17 35 35 H 1.09000 * 115.55766 * 325.66846 * 24 22 19 36 36 H 1.09002 * 117.49918 * 145.01819 * 25 24 22 37 37 H 1.09002 * 117.49754 * 0.02562 * 25 24 22 38 38 H 1.09008 * 117.49673 * 107.47884 * 26 25 24 39 39 H 1.08999 * 117.49942 * 252.47315 * 26 25 24 40 40 H 1.08999 * 110.36790 * 85.26491 * 27 9 7 41 41 H 1.08998 * 110.36202 * 322.94237 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0006 11 6 -0.4486 -4.0441 -0.0260 12 1 -0.6335 -4.4203 0.9802 13 8 -1.5631 -4.3159 -0.8782 14 6 0.8517 -4.6562 -0.6108 15 1 0.8563 -4.5970 -1.6991 16 7 1.0289 -6.0395 -0.1620 17 6 1.7589 -6.8990 -0.9000 18 8 2.2696 -6.5272 -1.9354 19 6 1.9408 -8.3221 -0.4388 20 1 1.0902 -8.7593 0.0839 21 6 3.3403 -8.7455 0.0115 22 6 2.7808 -9.2486 -1.3202 23 1 3.2025 -8.8290 -2.2336 24 6 2.3623 -10.7181 -1.4008 25 6 3.2021 -11.6444 -2.2827 26 6 1.8025 -11.2214 -2.7336 27 6 1.9333 -3.7312 0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5577 -2.0522 -0.8829 30 1 -0.5544 -2.0843 0.9025 31 1 -2.4007 -3.9546 -0.5575 32 1 0.6207 -6.3368 0.6661 33 1 3.4105 -9.4613 0.8306 34 1 4.1298 -7.9947 -0.0262 35 1 1.9414 -11.1379 -0.4872 36 1 3.3337 -12.6738 -1.9492 37 1 4.0529 -11.2070 -2.8051 38 1 1.7326 -10.5054 -3.5526 39 1 1.0136 -11.9726 -2.6972 40 1 2.1666 -4.0421 1.0189 41 1 2.8326 -3.7405 -0.6153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077814177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:20 Heat of formation + Delta-G solvation = -8.962576 kcal Electronic energy + Delta-G solvation = -21791.377663 eV Core-core repulsion = 18480.633286 eV Total energy + Delta-G solvation = -3310.744378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03511 -38.46361 -37.50144 -35.18104 -34.99344 -33.98875 -31.68276 -28.51180 -27.19929 -25.09058 -24.04916 -23.43667 -22.50202 -20.66036 -20.46249 -20.18633 -19.84757 -17.43368 -17.03903 -16.61089 -16.09568 -15.53307 -15.03001 -14.64021 -14.52809 -14.05470 -13.97634 -13.23134 -13.22171 -12.69513 -12.51517 -12.42080 -12.05265 -11.83341 -11.60596 -11.52147 -11.38490 -11.25845 -11.03099 -10.88661 -10.82906 -10.24718 -10.13715 -9.91946 -9.85255 -9.83237 -9.63108 -9.28124 -8.80909 -8.62269 -6.91683 -5.76692 -3.11204 2.62689 3.18843 3.38650 3.44106 3.45702 3.47474 4.01409 4.28719 4.44048 4.55987 4.63334 4.65344 4.80585 5.01551 5.05971 5.10048 5.12682 5.21041 5.42010 5.44052 5.54310 5.58741 5.66097 5.67894 5.79163 5.83052 5.89531 5.91731 6.09147 6.13650 6.15592 6.53755 6.61615 6.90803 7.32582 7.46672 7.70690 7.76530 8.12189 8.17068 8.45757 9.14799 9.74844 10.37953 11.35170 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032248 B = 0.003351 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.049728 B = 8353.095886 C = 8860.522917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.137 3.863 15 H 0.105 0.895 16 N -0.711 5.711 17 C 0.542 3.458 18 O -0.540 6.540 19 C -0.183 4.183 20 H 0.122 0.878 21 C -0.145 4.145 22 C -0.090 4.090 23 H 0.118 0.882 24 C -0.126 4.126 25 C -0.175 4.175 26 C -0.177 4.177 27 C 0.131 3.869 28 H 0.253 0.747 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.376 0.624 32 H 0.397 0.603 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.024 0.976 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 -20.757 1.704 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.032 3.968 15 H 0.123 0.877 16 N -0.360 5.360 17 C 0.328 3.672 18 O -0.417 6.417 19 C -0.204 4.204 20 H 0.140 0.860 21 C -0.182 4.182 22 C -0.109 4.109 23 H 0.136 0.864 24 C -0.144 4.144 25 C -0.212 4.212 26 C -0.214 4.214 27 C 0.003 3.997 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.223 0.777 32 H 0.231 0.769 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.661 -20.541 0.595 20.617 hybrid contribution -0.389 1.104 0.888 1.469 sum 1.272 -19.437 1.483 19.535 Atomic orbital electron populations 1.69935 1.04940 1.25092 1.57175 1.24823 0.95795 0.97804 1.02024 0.85988 0.78765 0.83438 0.77243 1.20405 1.21647 1.21715 1.19142 0.90585 0.82062 1.43791 0.90084 1.44261 1.01232 0.99912 1.87417 1.21822 0.85398 0.87824 1.02154 1.23471 0.85590 0.98524 0.91600 0.92509 1.86472 1.18759 1.80001 1.51578 1.22262 0.94404 0.79085 1.01034 0.87749 1.45835 1.53018 1.11278 1.25899 1.19581 0.78098 0.85869 0.83648 1.90704 1.48462 1.78517 1.24056 1.22263 0.97407 0.93747 1.07028 0.86001 1.23005 0.94200 1.02911 0.98131 1.21775 1.01397 0.91605 0.96093 0.86393 1.21737 1.04630 0.92669 0.95335 1.22942 0.95001 0.99494 1.03780 1.22978 0.96808 1.03528 0.98089 1.21839 0.94870 0.85731 0.97258 0.93701 0.92092 0.93313 0.77713 0.76874 0.87816 0.87979 0.87705 0.88778 0.88585 0.88454 0.88762 0.95854 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.54 3.39 -170.08 -0.58 -16.11 16 10 C 0.15 3.68 5.15 -3.06 -0.02 3.66 16 11 C 0.07 1.28 3.98 -24.90 -0.10 1.18 16 12 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 13 O -0.56 -9.93 13.39 -35.23 -0.47 -10.40 16 14 C 0.14 2.65 3.15 -65.79 -0.21 2.44 16 15 H 0.10 2.34 7.54 -51.93 -0.39 1.95 16 16 N -0.71 -10.82 5.20 -51.74 -0.27 -11.09 16 17 C 0.54 8.51 7.61 -10.99 -0.08 8.43 16 18 O -0.54 -10.78 15.90 5.56 0.09 -10.69 16 19 C -0.18 -2.06 5.91 -91.78 -0.54 -2.60 16 20 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 21 C -0.15 -1.41 9.95 -26.75 -0.27 -1.67 16 22 C -0.09 -0.96 5.36 -90.64 -0.49 -1.45 16 23 H 0.12 1.50 7.67 -51.93 -0.40 1.10 16 24 C -0.13 -1.08 5.85 -90.58 -0.53 -1.61 16 25 C -0.18 -1.35 10.25 -26.73 -0.27 -1.63 16 26 C -0.18 -1.49 10.25 -26.70 -0.27 -1.77 16 27 C 0.13 2.83 6.93 -2.54 -0.02 2.81 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 30 H 0.05 1.25 7.51 -51.92 -0.39 0.86 16 31 H 0.38 5.01 9.12 45.56 0.42 5.42 16 32 H 0.40 4.78 8.57 -40.82 -0.35 4.43 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -33.47 342.47 -9.25 -42.72 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.68 Total: 8.70 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.05 Total: 0.89 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.27 Total: -53.55 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.38 Total: -21.09 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.47 -9.25 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077814177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.756 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds