Wall clock time and date at job start Tue Mar 31 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00421 * 2 1 4 4 H 1.48499 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47129 * 299.99582 * 3 2 1 6 6 H 1.48508 * 109.47055 * 59.99529 * 3 2 1 7 7 C 1.38814 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00497 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64717 * 359.96972 * 9 7 2 11 11 C 1.54326 * 107.27035 * 178.96508 * 10 9 7 12 12 H 1.09005 * 110.86859 * 96.24348 * 11 10 9 13 13 O 1.42904 * 110.71697 * 219.44207 * 11 10 9 14 14 C 1.55155 * 102.94192 * 337.80537 * 11 10 9 15 15 H 1.08995 * 111.00598 * 277.39197 * 14 11 10 16 16 N 1.46505 * 111.00233 * 153.57385 * 14 11 10 17 17 C 1.34776 * 119.99826 * 154.99512 * 16 14 11 18 18 O 1.21282 * 120.00022 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00101 * 180.02562 * 17 16 14 20 20 H 1.08994 * 115.55966 * 34.31546 * 19 17 16 21 21 C 1.53000 * 117.49971 * 248.63055 * 19 17 16 22 22 C 1.52996 * 117.50169 * 180.02562 * 19 17 16 23 23 H 1.09005 * 117.51832 * 0.02562 * 22 19 17 24 24 C 1.53002 * 117.50032 * 214.98320 * 22 19 17 25 25 C 1.53002 * 117.49773 * 179.97438 * 24 22 19 26 26 C 1.53000 * 60.02940 * 252.51785 * 25 24 22 27 27 C 1.47426 * 125.64995 * 179.97438 * 9 7 2 28 28 H 0.97002 * 119.99563 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.88424 * 59.54802 * 10 9 7 30 30 H 1.09007 * 109.88439 * 298.38203 * 10 9 7 31 31 H 0.96697 * 113.99958 * 293.52037 * 13 11 10 32 32 H 0.97000 * 119.99960 * 335.00478 * 16 14 11 33 33 H 1.09000 * 117.50217 * 145.02253 * 21 19 17 34 34 H 1.09008 * 117.49877 * 359.97438 * 21 19 17 35 35 H 1.09000 * 115.55766 * 325.66846 * 24 22 19 36 36 H 1.09002 * 117.49918 * 145.01819 * 25 24 22 37 37 H 1.09002 * 117.49754 * 0.02562 * 25 24 22 38 38 H 1.09008 * 117.49673 * 107.47884 * 26 25 24 39 39 H 1.08999 * 117.49942 * 252.47315 * 26 25 24 40 40 H 1.08999 * 110.36790 * 85.26491 * 27 9 7 41 41 H 1.08998 * 110.36202 * 322.94237 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0006 11 6 -0.4486 -4.0441 -0.0260 12 1 -0.6335 -4.4203 0.9802 13 8 -1.5631 -4.3159 -0.8782 14 6 0.8517 -4.6562 -0.6108 15 1 0.8563 -4.5970 -1.6991 16 7 1.0289 -6.0395 -0.1620 17 6 1.7589 -6.8990 -0.9000 18 8 2.2696 -6.5272 -1.9354 19 6 1.9408 -8.3221 -0.4388 20 1 1.0902 -8.7593 0.0839 21 6 3.3403 -8.7455 0.0115 22 6 2.7808 -9.2486 -1.3202 23 1 3.2025 -8.8290 -2.2336 24 6 2.3623 -10.7181 -1.4008 25 6 3.2021 -11.6444 -2.2827 26 6 1.8025 -11.2214 -2.7336 27 6 1.9333 -3.7312 0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5577 -2.0522 -0.8829 30 1 -0.5544 -2.0843 0.9025 31 1 -2.4007 -3.9546 -0.5575 32 1 0.6207 -6.3368 0.6661 33 1 3.4105 -9.4613 0.8306 34 1 4.1298 -7.9947 -0.0262 35 1 1.9414 -11.1379 -0.4872 36 1 3.3337 -12.6738 -1.9492 37 1 4.0529 -11.2070 -2.8051 38 1 1.7326 -10.5054 -3.5526 39 1 1.0136 -11.9726 -2.6972 40 1 2.1666 -4.0421 1.0189 41 1 2.8326 -3.7405 -0.6153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077814177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:19 Heat of formation + Delta-G solvation = -33.718454 kcal Electronic energy + Delta-G solvation = -21792.451159 eV Core-core repulsion = 18480.633286 eV Total energy + Delta-G solvation = -3311.817873 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27814 -39.79796 -38.61812 -36.70936 -35.94110 -35.55598 -33.62286 -30.32771 -28.93606 -26.73191 -25.32369 -24.34269 -23.13638 -22.40876 -21.93309 -21.31300 -20.89547 -19.11915 -18.53213 -18.04322 -17.41863 -16.76136 -16.35670 -16.03157 -15.95389 -15.60539 -15.25172 -14.68764 -14.50269 -14.31086 -13.98201 -13.79758 -13.43459 -13.20627 -13.18890 -12.79382 -12.75721 -12.45428 -12.27433 -12.13535 -12.06938 -11.91592 -11.79160 -11.57325 -11.15994 -10.97101 -10.85867 -10.80029 -10.38578 -10.17826 -8.99742 -7.91187 -5.28713 1.44065 1.45925 1.46259 1.56262 1.99294 2.45866 2.62781 3.10457 3.24400 3.29761 3.49551 3.53202 3.69882 3.82638 3.92445 4.01885 4.05853 4.17030 4.26368 4.32383 4.35473 4.40517 4.42946 4.53550 4.77869 4.83354 4.83870 4.97707 5.01837 5.07198 5.20375 5.30467 5.34308 5.39295 5.41553 5.45576 5.63716 6.10985 6.54373 6.85017 7.02291 7.24432 7.66457 8.28946 9.18778 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032248 B = 0.003351 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.049728 B = 8353.095886 C = 8860.522917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.623 5.623 10 C 0.161 3.839 11 C 0.092 3.908 12 H 0.097 0.903 13 O -0.570 6.570 14 C 0.151 3.849 15 H 0.067 0.933 16 N -0.696 5.696 17 C 0.536 3.464 18 O -0.591 6.591 19 C -0.183 4.183 20 H 0.157 0.843 21 C -0.127 4.127 22 C -0.098 4.098 23 H 0.086 0.914 24 C -0.124 4.124 25 C -0.170 4.170 26 C -0.188 4.188 27 C 0.132 3.868 28 H 0.250 0.750 29 H 0.019 0.981 30 H 0.028 0.972 31 H 0.396 0.604 32 H 0.418 0.582 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.045 0.955 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 -23.047 3.571 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.810 3.190 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.035 3.965 11 C 0.031 3.969 12 H 0.115 0.885 13 O -0.378 6.378 14 C 0.044 3.956 15 H 0.085 0.915 16 N -0.347 5.347 17 C 0.325 3.675 18 O -0.472 6.472 19 C -0.204 4.204 20 H 0.174 0.826 21 C -0.165 4.165 22 C -0.116 4.116 23 H 0.105 0.895 24 C -0.142 4.142 25 C -0.207 4.207 26 C -0.225 4.225 27 C 0.005 3.995 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.247 0.753 32 H 0.256 0.744 33 H 0.157 0.843 34 H 0.105 0.895 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.063 0.937 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.605 -22.874 2.498 23.066 hybrid contribution -0.357 1.811 0.240 1.862 sum 1.248 -21.063 2.738 21.277 Atomic orbital electron populations 1.70136 1.06180 1.25518 1.57827 1.25674 0.96771 1.01030 1.02056 0.84965 0.78090 0.79082 0.76895 1.19195 1.21924 1.21250 1.19484 0.91017 0.83458 1.43730 0.90098 1.44538 1.02312 1.00827 1.87384 1.21632 0.84294 0.91393 0.99152 1.23172 0.85702 0.94465 0.93539 0.88509 1.86438 1.19540 1.79817 1.51991 1.21727 0.94026 0.81064 0.98770 0.91456 1.45613 1.53025 1.09380 1.26680 1.20451 0.76760 0.87570 0.82762 1.90689 1.50371 1.79738 1.26392 1.22278 0.99556 0.90561 1.07970 0.82594 1.23118 0.92379 1.02591 0.98377 1.21747 1.01578 0.92846 0.95468 0.89543 1.21778 1.04966 0.91218 0.96195 1.23016 0.94269 1.00288 1.03090 1.23025 0.97960 1.03753 0.97713 1.21920 0.94827 0.84675 0.98046 0.94097 0.96229 0.95382 0.75339 0.74392 0.84324 0.89455 0.85361 0.86794 0.89390 0.90327 0.87232 0.93692 0.95088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.66 10.31 21.65 0.22 -56.43 16 2 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 3 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 7 C -0.25 -14.29 10.28 84.03 0.86 -13.42 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.62 -32.93 3.39 -692.02 -2.35 -35.28 16 10 C 0.16 7.87 5.15 86.73 0.45 8.32 16 11 C 0.09 3.31 3.98 31.78 0.13 3.44 16 12 H 0.10 2.81 8.00 -2.38 -0.02 2.79 16 13 O -0.57 -19.36 13.39 -148.98 -1.99 -21.35 16 14 C 0.15 5.80 3.15 46.37 0.15 5.95 16 15 H 0.07 3.13 7.54 -2.39 -0.02 3.11 16 16 N -0.70 -20.00 5.20 -436.00 -2.27 -22.27 16 17 C 0.54 16.41 7.61 87.66 0.67 17.08 16 18 O -0.59 -24.34 15.90 -3.04 -0.05 -24.39 16 19 C -0.18 -3.65 5.91 -11.54 -0.07 -3.71 16 20 H 0.16 2.08 8.14 -2.39 -0.02 2.06 16 21 C -0.13 -2.12 9.95 30.58 0.30 -1.82 16 22 C -0.10 -1.95 5.36 -10.81 -0.06 -2.01 16 23 H 0.09 2.29 7.67 -2.38 -0.02 2.27 16 24 C -0.12 -1.80 5.85 -10.77 -0.06 -1.87 16 25 C -0.17 -2.28 10.25 30.60 0.31 -1.97 16 26 C -0.19 -2.88 10.25 30.62 0.31 -2.57 16 27 C 0.13 5.76 6.93 86.85 0.60 6.37 16 28 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.02 1.10 7.30 -2.39 -0.02 1.08 16 30 H 0.03 1.47 7.51 -2.38 -0.02 1.45 16 31 H 0.40 9.88 9.12 -74.06 -0.68 9.20 16 32 H 0.42 8.58 8.57 -92.71 -0.79 7.79 16 33 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.48 8.14 -2.38 -0.02 1.47 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -76.24 342.47 -0.78 -77.01 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.43 Total: 23.77 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 4.06 Total: 10.69 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -4.39 Total: -113.98 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -2.04 Total: -45.74 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -76.24 -0.78 -77.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077814177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.294 kcal (2) G-P(sol) polarization free energy of solvation -76.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds