Wall clock time and date at job start Tue Mar 31 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00157 * 2 1 4 4 H 1.48506 * 109.47009 * 264.92459 * 3 2 1 5 5 H 1.48495 * 109.47464 * 144.92105 * 3 2 1 6 6 H 1.48497 * 109.47056 * 24.91966 * 3 2 1 7 7 C 1.38807 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00247 * 170.25188 * 7 2 1 9 9 N 1.36943 * 119.99997 * 350.24589 * 7 2 1 10 10 C 1.46874 * 125.36921 * 349.28093 * 9 7 2 11 11 C 1.54191 * 106.39931 * 197.84774 * 10 9 7 12 12 H 1.08999 * 109.64147 * 89.91824 * 11 10 9 13 13 O 1.40774 * 110.24179 * 210.34046 * 11 10 9 14 14 C 1.42112 * 117.88057 * 67.04833 * 13 11 10 15 15 C 1.51983 * 111.37029 * 57.57110 * 14 13 11 16 16 N 1.44958 * 111.87066 * 318.95708 * 15 14 13 17 17 C 1.34772 * 117.32630 * 203.75875 * 16 15 14 18 18 O 1.21287 * 120.00031 * 176.65800 * 17 16 15 19 19 C 1.50704 * 120.00237 * 356.65813 * 17 16 15 20 20 C 1.53780 * 113.61130 * 279.14070 * 19 17 16 21 21 C 1.53962 * 87.01814 * 220.04270 * 20 19 17 22 22 C 1.53775 * 113.61648 * 181.52895 * 19 17 16 23 23 C 1.44537 * 125.34887 * 23.73001 * 16 15 14 24 24 H 1.08994 * 109.33937 * 106.67919 * 23 16 15 25 25 C 1.46790 * 125.36244 * 168.97482 * 9 7 2 26 26 H 0.96999 * 119.99831 * 0.02562 * 1 2 3 27 27 H 1.08994 * 110.06818 * 317.08633 * 10 9 7 28 28 H 1.09008 * 110.06630 * 78.55843 * 10 9 7 29 29 H 1.09002 * 109.42891 * 296.91291 * 14 13 11 30 30 H 1.08998 * 108.88413 * 177.87346 * 14 13 11 31 31 H 1.09002 * 108.99924 * 198.33341 * 15 14 13 32 32 H 1.09003 * 108.93586 * 79.52797 * 15 14 13 33 33 H 1.09003 * 112.84545 * 50.33309 * 19 17 16 34 34 H 1.08993 * 113.61724 * 334.56286 * 20 19 17 35 35 H 1.08999 * 113.61532 * 105.46961 * 20 19 17 36 36 H 1.09000 * 113.53707 * 270.81442 * 21 20 19 37 37 H 1.09003 * 113.74099 * 139.94220 * 21 20 19 38 38 H 1.09000 * 113.61752 * 254.52575 * 22 19 17 39 39 H 1.09001 * 113.61791 * 25.35005 * 22 19 17 40 40 H 1.09002 * 109.83057 * 298.35907 * 25 9 7 41 41 H 1.08996 * 109.83179 * 59.32637 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6050 1.9844 -1.3947 5 1 3.4900 1.4736 0.8046 6 1 1.3981 2.6812 0.5899 7 6 2.0102 -1.2021 0.0005 8 1 3.0785 -1.2090 -0.1578 9 7 1.3403 -2.3794 0.2020 10 6 -0.0547 -2.4986 0.6460 11 6 -0.2257 -3.9418 1.1613 12 1 0.0089 -3.9812 2.2251 13 8 -1.5489 -4.3775 0.9592 14 6 -1.9923 -4.5574 -0.3789 15 6 -1.1139 -5.5482 -1.1249 16 7 0.2909 -5.3597 -0.8213 17 6 1.1845 -5.7961 -1.7309 18 8 2.3698 -5.6089 -1.5548 19 6 0.7109 -6.5168 -2.9669 20 6 0.3972 -8.0036 -2.7308 21 6 1.0501 -8.2756 -4.0983 22 6 1.8537 -6.9819 -3.8847 23 6 0.8118 -4.7415 0.3769 24 1 1.2392 -5.5088 1.0224 25 6 1.9013 -3.7210 0.0021 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2536 -1.7887 1.4487 28 1 -0.7301 -2.3165 -0.1900 29 1 -1.9708 -3.6001 -0.8998 30 1 -3.0164 -4.9303 -0.3641 31 1 -1.2658 -5.4202 -2.1967 32 1 -1.4050 -6.5604 -0.8439 33 1 -0.0804 -5.9815 -3.4918 34 1 0.9426 -8.4372 -1.8926 35 1 -0.6695 -8.2258 -2.7034 36 1 0.3509 -8.2225 -4.9328 37 1 1.6668 -9.1742 -4.1192 38 1 1.9610 -6.3806 -4.7874 39 1 2.7984 -7.1343 -3.3628 40 1 2.1886 -3.8500 -1.0415 41 1 2.7703 -3.8581 0.6456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082973371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:09 Heat of formation + Delta-G solvation = -7.943655 kcal Electronic energy + Delta-G solvation = -23586.635556 eV Core-core repulsion = 20275.935362 eV Total energy + Delta-G solvation = -3310.700194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96802 -39.07624 -37.25657 -35.76517 -34.77182 -32.34570 -30.00604 -28.22251 -27.77525 -26.10201 -25.71010 -24.45168 -23.24429 -21.39216 -20.14872 -19.32381 -18.47740 -17.57056 -16.89152 -16.57949 -15.81861 -15.46389 -14.90888 -14.87777 -14.64209 -14.41345 -13.92615 -13.48117 -13.08380 -12.72007 -12.58544 -12.52041 -12.17239 -12.07078 -11.94596 -11.39877 -11.14381 -10.96682 -10.87538 -10.68323 -10.60081 -10.55556 -10.48295 -10.26415 -10.11549 -9.71076 -9.29632 -8.89160 -8.56473 -8.18512 -6.73151 -5.72226 -3.04830 2.82071 3.13896 3.42106 3.47132 3.49785 4.09835 4.42288 4.48493 4.52636 4.56623 4.71418 4.86642 4.90678 5.16903 5.23332 5.30686 5.42508 5.50303 5.53265 5.58805 5.67365 5.71570 5.72187 5.75131 5.85475 5.89757 5.96149 6.01858 6.12572 6.25139 6.33226 6.61808 6.87087 7.21160 7.40147 7.46536 7.55379 7.75296 7.84810 8.27308 8.45878 9.22548 9.84163 10.49491 11.40693 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.005662 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.330899 B = 4944.291268 C = 5682.386369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.153 3.847 11 C 0.067 3.933 12 H 0.112 0.888 13 O -0.370 6.370 14 C 0.054 3.946 15 C 0.082 3.918 16 N -0.587 5.587 17 C 0.515 3.485 18 O -0.525 6.525 19 C -0.139 4.139 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.118 4.118 23 C 0.113 3.887 24 H 0.069 0.931 25 C 0.123 3.877 26 H 0.252 0.748 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -16.105 -4.966 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.129 0.871 13 O -0.287 6.287 14 C -0.023 4.023 15 C -0.042 4.042 16 N -0.321 5.321 17 C 0.303 3.697 18 O -0.401 6.401 19 C -0.160 4.160 20 C -0.159 4.159 21 C -0.179 4.179 22 C -0.156 4.156 23 C 0.009 3.991 24 H 0.087 0.913 25 C -0.003 4.003 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.063 -15.805 -4.673 16.975 hybrid contribution 0.419 1.068 -0.267 1.178 sum -3.644 -14.737 -4.940 15.965 Atomic orbital electron populations 1.69955 1.04970 1.25184 1.56672 1.24823 0.95622 0.97804 1.02140 0.86154 0.78709 0.83326 0.77684 1.21545 1.20672 1.21601 1.19008 0.91208 0.82627 1.42555 0.90546 1.44255 1.09757 1.00319 1.78621 1.21659 0.87096 0.89922 0.98582 1.22960 0.80287 0.96236 0.99731 0.87075 1.87056 1.28860 1.87268 1.25511 1.22400 0.97145 0.98612 0.84171 1.21615 0.81757 1.00069 1.00747 1.46718 1.06008 1.59106 1.20283 1.20505 0.86162 0.78796 0.84268 1.90660 1.16785 1.55422 1.77267 1.22827 1.01158 0.96493 0.95520 1.22826 1.01285 0.93371 0.98389 1.22857 0.99529 0.98381 0.97102 1.22792 0.97689 0.96187 0.98882 1.21584 0.96132 0.95532 0.85894 0.91312 1.21837 0.93234 0.84103 1.01105 0.93752 0.91989 0.94247 0.91862 0.87980 0.90084 0.91805 0.87115 0.89802 0.90824 0.90028 0.91136 0.91089 0.88712 0.91944 0.95110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 10.67 55.49 0.59 -26.85 16 2 C -0.01 -0.22 5.40 -17.43 -0.09 -0.31 16 3 Si 0.91 22.61 29.56 -169.99 -5.03 17.58 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.56 10.21 -15.06 -0.15 -6.71 16 8 H 0.08 2.18 7.85 -52.48 -0.41 1.77 16 9 N -0.60 -16.10 3.39 -171.41 -0.58 -16.68 16 10 C 0.15 3.78 4.98 -3.22 -0.02 3.77 16 11 C 0.07 1.32 3.91 -26.27 -0.10 1.22 16 12 H 0.11 2.06 8.14 -51.93 -0.42 1.63 16 13 O -0.37 -6.58 10.31 -34.51 -0.36 -6.94 16 14 C 0.05 0.78 6.74 36.64 0.25 1.03 16 15 C 0.08 1.07 5.80 -5.39 -0.03 1.04 16 16 N -0.59 -9.86 3.08 -168.99 -0.52 -10.38 16 17 C 0.51 8.63 6.54 -10.99 -0.07 8.56 16 18 O -0.52 -10.66 12.93 5.55 0.07 -10.59 16 19 C -0.14 -1.68 2.93 -90.96 -0.27 -1.95 16 20 C -0.12 -1.15 7.53 -25.82 -0.19 -1.34 16 21 C -0.14 -1.21 8.09 -25.82 -0.21 -1.42 16 22 C -0.12 -1.34 7.40 -25.92 -0.19 -1.54 16 23 C 0.11 2.18 3.37 -68.66 -0.23 1.95 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 C 0.12 2.87 6.01 -3.41 -0.02 2.85 16 26 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.06 1.70 7.34 -51.93 -0.38 1.31 16 28 H 0.04 1.06 6.03 -51.92 -0.31 0.75 16 29 H 0.06 1.06 6.69 -51.93 -0.35 0.72 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 0.90 6.16 -51.93 -0.32 0.58 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.11 1.19 6.78 -51.93 -0.35 0.84 16 34 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.24 7.45 -51.93 -0.39 0.86 16 40 H 0.06 1.58 5.17 -51.93 -0.27 1.31 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -33.30 313.32 -8.57 -41.87 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.14 Total: 0.12 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.34 Total: 7.14 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.51 Total: -53.91 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.28 Total: -17.53 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.30 -8.57 -41.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082973371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.927 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds