Wall clock time and date at job start Tue Mar 31 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00157 * 2 1 4 4 H 1.48506 * 109.47009 * 264.92459 * 3 2 1 5 5 H 1.48495 * 109.47464 * 144.92105 * 3 2 1 6 6 H 1.48497 * 109.47056 * 24.91966 * 3 2 1 7 7 C 1.38807 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00247 * 170.25188 * 7 2 1 9 9 N 1.36943 * 119.99997 * 350.24589 * 7 2 1 10 10 C 1.46874 * 125.36921 * 349.28093 * 9 7 2 11 11 C 1.54191 * 106.39931 * 197.84774 * 10 9 7 12 12 H 1.08999 * 109.64147 * 89.91824 * 11 10 9 13 13 O 1.40774 * 110.24179 * 210.34046 * 11 10 9 14 14 C 1.42112 * 117.88057 * 67.04833 * 13 11 10 15 15 C 1.51983 * 111.37029 * 57.57110 * 14 13 11 16 16 N 1.44958 * 111.87066 * 318.95708 * 15 14 13 17 17 C 1.34772 * 117.32630 * 203.75875 * 16 15 14 18 18 O 1.21287 * 120.00031 * 176.65800 * 17 16 15 19 19 C 1.50704 * 120.00237 * 356.65813 * 17 16 15 20 20 C 1.53780 * 113.61130 * 279.14070 * 19 17 16 21 21 C 1.53962 * 87.01814 * 220.04270 * 20 19 17 22 22 C 1.53775 * 113.61648 * 181.52895 * 19 17 16 23 23 C 1.44537 * 125.34887 * 23.73001 * 16 15 14 24 24 H 1.08994 * 109.33937 * 106.67919 * 23 16 15 25 25 C 1.46790 * 125.36244 * 168.97482 * 9 7 2 26 26 H 0.96999 * 119.99831 * 0.02562 * 1 2 3 27 27 H 1.08994 * 110.06818 * 317.08633 * 10 9 7 28 28 H 1.09008 * 110.06630 * 78.55843 * 10 9 7 29 29 H 1.09002 * 109.42891 * 296.91291 * 14 13 11 30 30 H 1.08998 * 108.88413 * 177.87346 * 14 13 11 31 31 H 1.09002 * 108.99924 * 198.33341 * 15 14 13 32 32 H 1.09003 * 108.93586 * 79.52797 * 15 14 13 33 33 H 1.09003 * 112.84545 * 50.33309 * 19 17 16 34 34 H 1.08993 * 113.61724 * 334.56286 * 20 19 17 35 35 H 1.08999 * 113.61532 * 105.46961 * 20 19 17 36 36 H 1.09000 * 113.53707 * 270.81442 * 21 20 19 37 37 H 1.09003 * 113.74099 * 139.94220 * 21 20 19 38 38 H 1.09000 * 113.61752 * 254.52575 * 22 19 17 39 39 H 1.09001 * 113.61791 * 25.35005 * 22 19 17 40 40 H 1.09002 * 109.83057 * 298.35907 * 25 9 7 41 41 H 1.08996 * 109.83179 * 59.32637 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6050 1.9844 -1.3947 5 1 3.4900 1.4736 0.8046 6 1 1.3981 2.6812 0.5899 7 6 2.0102 -1.2021 0.0005 8 1 3.0785 -1.2090 -0.1578 9 7 1.3403 -2.3794 0.2020 10 6 -0.0547 -2.4986 0.6460 11 6 -0.2257 -3.9418 1.1613 12 1 0.0089 -3.9812 2.2251 13 8 -1.5489 -4.3775 0.9592 14 6 -1.9923 -4.5574 -0.3789 15 6 -1.1139 -5.5482 -1.1249 16 7 0.2909 -5.3597 -0.8213 17 6 1.1845 -5.7961 -1.7309 18 8 2.3698 -5.6089 -1.5548 19 6 0.7109 -6.5168 -2.9669 20 6 0.3972 -8.0036 -2.7308 21 6 1.0501 -8.2756 -4.0983 22 6 1.8537 -6.9819 -3.8847 23 6 0.8118 -4.7415 0.3769 24 1 1.2392 -5.5088 1.0224 25 6 1.9013 -3.7210 0.0021 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2536 -1.7887 1.4487 28 1 -0.7301 -2.3165 -0.1900 29 1 -1.9708 -3.6001 -0.8998 30 1 -3.0164 -4.9303 -0.3641 31 1 -1.2658 -5.4202 -2.1967 32 1 -1.4050 -6.5604 -0.8439 33 1 -0.0804 -5.9815 -3.4918 34 1 0.9426 -8.4372 -1.8926 35 1 -0.6695 -8.2258 -2.7034 36 1 0.3509 -8.2225 -4.9328 37 1 1.6668 -9.1742 -4.1192 38 1 1.9610 -6.3806 -4.7874 39 1 2.7984 -7.1343 -3.3628 40 1 2.1886 -3.8500 -1.0415 41 1 2.7703 -3.8581 0.6456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082973371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:09 Heat of formation + Delta-G solvation = -30.981475 kcal Electronic energy + Delta-G solvation = -23587.634551 eV Core-core repulsion = 20275.935362 eV Total energy + Delta-G solvation = -3311.699189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.30282 -40.33180 -38.39394 -37.52974 -36.13592 -34.32008 -31.73096 -29.62969 -29.51269 -27.45186 -26.52943 -26.24690 -24.64824 -22.88443 -21.74580 -20.42911 -19.79435 -19.15031 -18.40162 -18.23266 -17.06570 -16.89741 -16.44583 -16.22872 -16.02796 -15.69189 -15.61965 -15.07346 -14.62854 -14.15060 -14.00644 -13.83352 -13.53203 -13.38860 -13.11771 -12.90815 -12.80757 -12.76645 -12.40371 -12.24530 -12.17796 -12.05140 -11.83084 -11.66643 -11.33795 -11.26049 -10.81493 -10.73854 -10.33539 -9.56283 -8.89751 -7.94563 -5.31037 1.41372 1.43774 1.53095 1.56504 1.86704 2.44170 2.74822 3.23575 3.33372 3.51349 3.65953 3.69486 3.71932 3.78932 3.91681 3.94114 4.06558 4.09920 4.26602 4.36464 4.43888 4.46672 4.70781 4.74097 4.82996 4.87018 4.89536 4.98903 5.04433 5.07411 5.12681 5.21671 5.31166 5.43374 5.53817 5.56014 5.63880 6.11643 6.24672 6.38661 7.01415 7.17090 7.68095 8.32063 9.16405 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.005662 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.330899 B = 4944.291268 C = 5682.386369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.056 4.056 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.287 1.287 7 C -0.253 4.253 8 H 0.071 0.929 9 N -0.620 5.620 10 C 0.164 3.836 11 C 0.086 3.914 12 H 0.124 0.876 13 O -0.371 6.371 14 C 0.046 3.954 15 C 0.077 3.923 16 N -0.594 5.594 17 C 0.505 3.495 18 O -0.572 6.572 19 C -0.139 4.139 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.130 4.130 23 C 0.124 3.876 24 H 0.085 0.915 25 C 0.124 3.876 26 H 0.251 0.749 27 H 0.026 0.974 28 H 0.012 0.988 29 H 0.032 0.968 30 H 0.149 0.851 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 -18.065 -5.798 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.250 4.250 3 Si 0.807 3.193 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.381 4.381 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.039 3.961 11 C 0.026 3.974 12 H 0.142 0.858 13 O -0.288 6.288 14 C -0.031 4.031 15 C -0.044 4.044 16 N -0.327 5.327 17 C 0.295 3.705 18 O -0.452 6.452 19 C -0.160 4.160 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.168 4.168 23 C 0.018 3.982 24 H 0.103 0.897 25 C -0.001 4.001 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.166 0.834 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.610 -17.801 -5.517 19.462 hybrid contribution 0.889 1.695 -0.059 1.915 sum -4.721 -16.106 -5.576 17.686 Atomic orbital electron populations 1.70148 1.06300 1.25750 1.57051 1.25670 0.96573 1.01038 1.01750 0.85095 0.77639 0.78758 0.77789 1.20975 1.19724 1.21239 1.19317 0.91458 0.84168 1.43189 0.91067 1.44520 1.10572 1.01019 1.78638 1.21433 0.85637 0.92720 0.96340 1.22633 0.81757 0.92762 1.00216 0.85820 1.87063 1.27335 1.86742 1.27691 1.22749 0.99879 0.97962 0.82465 1.21941 0.79027 1.01395 1.02083 1.46903 1.07842 1.58510 1.19441 1.21452 0.85597 0.78180 0.85262 1.90634 1.18883 1.57291 1.78344 1.23012 1.01888 0.97833 0.93261 1.22827 1.03094 0.90449 0.98442 1.22827 0.99087 0.96802 0.97409 1.22836 0.96961 0.98449 0.98550 1.21300 0.94732 0.94770 0.87364 0.89745 1.21839 0.94567 0.83970 0.99727 0.94035 0.95547 0.97025 0.94979 0.83371 0.87672 0.88002 0.85118 0.90905 0.87794 0.87743 0.90281 0.91033 0.91302 0.93973 0.96041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.09 10.67 21.65 0.23 -57.86 16 2 C -0.06 -3.34 5.40 84.86 0.46 -2.88 16 3 Si 0.98 47.37 29.56 68.60 2.03 49.40 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.25 -15.23 10.21 84.03 0.86 -14.38 16 8 H 0.07 4.24 7.85 -2.91 -0.02 4.21 16 9 N -0.62 -34.58 3.39 -696.21 -2.36 -36.94 16 10 C 0.16 8.45 4.98 86.71 0.43 8.88 16 11 C 0.09 3.38 3.91 30.89 0.12 3.50 16 12 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 13 O -0.37 -12.63 10.31 -146.39 -1.51 -14.14 16 14 C 0.05 1.22 6.74 71.65 0.48 1.71 16 15 C 0.08 1.76 5.80 86.33 0.50 2.26 16 16 N -0.59 -19.14 3.08 -806.97 -2.48 -21.62 16 17 C 0.50 16.62 6.54 87.66 0.57 17.19 16 18 O -0.57 -23.95 12.93 -3.05 -0.04 -23.99 16 19 C -0.14 -3.05 2.93 -11.01 -0.03 -3.08 16 20 C -0.11 -1.67 7.53 31.18 0.23 -1.44 16 21 C -0.12 -1.70 8.09 31.18 0.25 -1.45 16 22 C -0.13 -2.81 7.40 31.12 0.23 -2.58 16 23 C 0.12 4.76 3.37 45.56 0.15 4.91 16 24 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 25 C 0.12 6.03 6.01 86.63 0.52 6.55 16 26 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.03 1.51 7.34 -2.39 -0.02 1.49 16 28 H 0.01 0.67 6.03 -2.38 -0.01 0.65 16 29 H 0.03 1.06 6.69 -2.39 -0.02 1.05 16 30 H 0.15 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.11 1.91 6.16 -2.39 -0.01 1.89 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.13 2.35 6.78 -2.39 -0.02 2.33 16 34 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.85 7.45 -2.39 -0.02 1.83 16 40 H 0.04 2.25 5.17 -2.39 -0.01 2.24 16 41 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.97 313.32 1.68 -75.29 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.02 Total: 10.65 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 4.79 Total: 19.21 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -4.61 Total: -116.42 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.55 Total: -38.13 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -76.97 1.68 -75.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082973371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.310 kcal (2) G-P(sol) polarization free energy of solvation -76.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds