Wall clock time and date at job start Tue Mar 31 2020 02:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00122 * 2 1 4 4 H 1.48507 * 109.47260 * 274.65821 * 3 2 1 5 5 H 1.48495 * 109.47294 * 34.65943 * 3 2 1 6 6 H 1.48503 * 109.47422 * 154.65862 * 3 2 1 7 7 C 1.38813 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00199 * 170.71253 * 7 2 1 9 9 N 1.36939 * 119.99839 * 350.72067 * 7 2 1 10 10 C 1.46876 * 125.36720 * 350.22667 * 9 7 2 11 11 C 1.54191 * 106.39730 * 197.80560 * 10 9 7 12 12 H 1.09000 * 109.64906 * 89.89448 * 11 10 9 13 13 O 1.40787 * 110.22883 * 210.70920 * 11 10 9 14 14 C 1.41322 * 118.39565 * 67.67215 * 13 11 10 15 15 C 1.51974 * 111.53601 * 56.95061 * 14 13 11 16 16 N 1.44965 * 111.88407 * 319.32991 * 15 14 13 17 17 C 1.34776 * 117.32007 * 203.67895 * 16 15 14 18 18 O 1.21284 * 120.00045 * 176.63326 * 17 16 15 19 19 C 1.50698 * 120.00390 * 356.62995 * 17 16 15 20 20 C 1.52999 * 109.47613 * 180.02562 * 19 17 16 21 21 C 1.52995 * 117.50231 * 243.62375 * 20 19 17 22 22 C 1.52995 * 60.00144 * 252.50734 * 21 20 19 23 23 C 1.43705 * 125.27214 * 23.66849 * 16 15 14 24 24 H 1.09003 * 108.58076 * 106.66218 * 23 16 15 25 25 C 1.46793 * 125.36286 * 170.18240 * 9 7 2 26 26 H 0.96994 * 119.99999 * 359.97438 * 1 2 3 27 27 H 1.09004 * 110.06591 * 317.03848 * 10 9 7 28 28 H 1.09002 * 110.07258 * 78.56943 * 10 9 7 29 29 H 1.08999 * 109.06494 * 177.47376 * 14 13 11 30 30 H 1.09002 * 109.06877 * 296.48860 * 14 13 11 31 31 H 1.09008 * 108.99998 * 79.94667 * 15 14 13 32 32 H 1.08996 * 108.99987 * 198.70789 * 15 14 13 33 33 H 1.09006 * 109.47322 * 300.00232 * 19 17 16 34 34 H 1.09003 * 109.47123 * 59.99640 * 19 17 16 35 35 H 1.09006 * 115.54654 * 29.32862 * 20 19 17 36 36 H 1.09010 * 117.49702 * 359.97438 * 21 20 19 37 37 H 1.08997 * 117.50083 * 145.01567 * 21 20 19 38 38 H 1.08994 * 117.50059 * 252.50933 * 22 21 20 39 39 H 1.09003 * 117.50163 * 107.48501 * 22 21 20 40 40 H 1.08996 * 109.83108 * 298.43615 * 25 9 7 41 41 H 1.08995 * 109.82426 * 59.31793 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3993 2.1033 -1.3955 5 1 1.5004 2.6222 0.7962 6 1 3.5936 1.4137 0.5992 7 6 2.0103 -1.2021 -0.0005 8 1 3.0797 -1.2082 -0.1515 9 7 1.3390 -2.3804 0.1902 10 6 -0.0648 -2.5016 0.6046 11 6 -0.2437 -3.9439 1.1196 12 1 -0.0314 -3.9805 2.1881 13 8 -1.5592 -4.3858 0.8827 14 6 -1.9701 -4.5869 -0.4545 15 6 -1.0667 -5.5756 -1.1729 16 7 0.3293 -5.3733 -0.8388 17 6 1.2468 -5.8104 -1.7241 18 8 2.4263 -5.6119 -1.5229 19 6 0.8072 -6.5457 -2.9639 20 6 2.0353 -6.9288 -3.7921 21 6 2.1698 -6.3092 -5.1845 22 6 1.8077 -7.7884 -5.0372 23 6 0.8132 -4.7446 0.3594 24 1 1.2279 -5.5132 1.0118 25 6 1.9089 -3.7213 0.0117 26 1 -0.4850 0.8400 0.0004 27 1 -0.2823 -1.7902 1.4014 28 1 -0.7227 -2.3238 -0.2461 29 1 -2.9910 -4.9687 -0.4596 30 1 -1.9439 -3.6336 -0.9823 31 1 -1.3555 -6.5887 -0.8926 32 1 -1.1950 -5.4565 -2.2487 33 1 0.2660 -7.4478 -2.6786 34 1 0.1555 -5.9029 -3.5557 35 1 2.9510 -7.0968 -3.2250 36 1 1.3831 -5.6288 -5.5107 37 1 3.1741 -6.0693 -5.5337 38 1 2.5737 -8.5216 -5.2895 39 1 0.7830 -8.0810 -5.2663 40 1 2.2241 -3.8544 -1.0232 41 1 2.7618 -3.8522 0.6776 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082975251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:08 Heat of formation + Delta-G solvation = -4.439546 kcal Electronic energy + Delta-G solvation = -23308.949806 eV Core-core repulsion = 19998.401562 eV Total energy + Delta-G solvation = -3310.548244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84844 -38.64398 -37.05502 -35.85360 -34.82487 -32.43042 -30.07768 -29.73775 -27.88208 -26.94865 -24.56298 -23.32677 -22.44277 -21.74259 -20.32903 -19.75974 -18.46626 -17.51704 -16.89234 -16.56713 -15.72747 -15.65760 -15.07092 -14.89803 -14.62963 -14.07507 -13.91455 -13.71407 -13.53848 -12.97002 -12.73734 -12.30153 -12.08384 -11.93237 -11.58485 -11.54682 -11.26825 -10.99809 -10.87864 -10.66490 -10.55727 -10.41931 -10.36518 -10.10697 -10.01554 -9.71513 -9.33238 -8.92277 -8.56822 -8.20026 -6.73907 -5.72226 -3.04476 2.82664 3.09953 3.41670 3.47289 3.50063 3.74712 4.07532 4.48067 4.54617 4.64082 4.83973 4.86240 4.99778 5.07437 5.16185 5.31446 5.40151 5.41699 5.47256 5.53417 5.55891 5.61669 5.70864 5.74901 5.83314 5.87089 5.94881 6.03640 6.11629 6.24248 6.27559 6.61970 6.86786 7.21089 7.40776 7.47235 7.52733 7.75740 7.86200 8.26817 8.43644 9.22629 9.84123 10.49061 11.40732 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.005814 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.738200 B = 4814.485073 C = 5808.314774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.113 0.887 13 O -0.371 6.371 14 C 0.057 3.943 15 C 0.078 3.922 16 N -0.589 5.589 17 C 0.507 3.493 18 O -0.522 6.522 19 C -0.109 4.109 20 C -0.138 4.138 21 C -0.177 4.177 22 C -0.182 4.182 23 C 0.112 3.888 24 H 0.068 0.932 25 C 0.122 3.878 26 H 0.252 0.748 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 -15.362 -5.718 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C 0.010 3.990 12 H 0.130 0.870 13 O -0.288 6.288 14 C -0.020 4.020 15 C -0.046 4.046 16 N -0.323 5.323 17 C 0.296 3.704 18 O -0.398 6.398 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.214 4.214 22 C -0.219 4.219 23 C 0.007 3.993 24 H 0.086 0.914 25 C -0.003 4.003 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.439 -15.060 -5.425 16.372 hybrid contribution 0.464 0.990 -0.323 1.140 sum -2.975 -14.070 -5.747 15.487 Atomic orbital electron populations 1.69955 1.04947 1.25105 1.56841 1.24812 0.95637 0.97774 1.02213 0.86117 0.78803 0.83492 0.77471 1.21691 1.21623 1.20549 1.19037 0.91178 0.82566 1.42497 0.90493 1.44257 1.08584 1.00318 1.79841 1.21669 0.86843 0.89924 0.98804 1.23019 0.80114 0.96159 0.99727 0.86969 1.86836 1.29662 1.86889 1.25388 1.22246 0.97223 0.98397 0.84178 1.21654 0.82065 1.00186 1.00713 1.46521 1.06011 1.58903 1.20907 1.20562 0.86055 0.79444 0.84385 1.90665 1.17385 1.55469 1.76306 1.21280 0.98130 1.00709 0.94725 1.22058 0.99796 1.04142 0.89666 1.23024 1.02991 0.95541 0.99858 1.22982 1.02416 0.94088 1.02452 1.21452 0.96523 0.95445 0.85840 0.91430 1.21838 0.93182 0.84059 1.01244 0.93780 0.91760 0.94387 0.87885 0.92071 0.91719 0.90071 0.88715 0.88925 0.86388 0.88824 0.88760 0.88853 0.88928 0.91887 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.38 10.62 55.49 0.59 -26.79 16 2 C -0.01 -0.23 5.41 -17.43 -0.09 -0.33 16 3 Si 0.91 22.58 29.56 -169.99 -5.03 17.55 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.50 10.22 -15.06 -0.15 -6.65 16 8 H 0.08 2.19 7.85 -52.48 -0.41 1.78 16 9 N -0.60 -16.04 3.39 -171.41 -0.58 -16.62 16 10 C 0.15 3.77 4.99 -3.21 -0.02 3.75 16 11 C 0.07 1.35 3.93 -26.19 -0.10 1.24 16 12 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 13 O -0.37 -6.53 10.25 -34.36 -0.35 -6.88 16 14 C 0.06 0.81 6.74 36.64 0.25 1.06 16 15 C 0.08 0.98 5.86 -5.39 -0.03 0.95 16 16 N -0.59 -9.71 3.06 -169.49 -0.52 -10.23 16 17 C 0.51 8.33 7.02 -10.99 -0.08 8.25 16 18 O -0.52 -10.43 12.58 5.55 0.07 -10.36 16 19 C -0.11 -1.27 4.55 -27.88 -0.13 -1.40 16 20 C -0.14 -1.65 5.41 -90.62 -0.49 -2.14 16 21 C -0.18 -1.94 10.18 -26.74 -0.27 -2.21 16 22 C -0.18 -1.68 10.25 -26.73 -0.27 -1.96 16 23 C 0.11 2.14 3.32 -69.02 -0.23 1.91 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 C 0.12 2.84 6.01 -3.41 -0.02 2.82 16 26 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.06 1.75 7.26 -51.93 -0.38 1.38 16 28 H 0.04 1.02 6.12 -51.93 -0.32 0.71 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.08 0.85 6.33 -51.93 -0.33 0.52 16 33 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.09 0.98 6.86 -51.93 -0.36 0.62 16 35 H 0.12 1.63 7.31 -51.93 -0.38 1.25 16 36 H 0.09 0.99 8.03 -51.92 -0.42 0.57 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.58 5.17 -51.93 -0.27 1.31 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 317.85 15.07 4.79 4.79 Total: -1.00 -33.28 317.85 -8.81 -42.09 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.14 Total: 1.14 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.64 Total: 5.30 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.51 Total: -53.64 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.28 Total: -17.24 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.28 -8.81 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082975251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.655 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds