Wall clock time and date at job start Tue Mar 31 2020 02:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00122 * 2 1 4 4 H 1.48507 * 109.47260 * 274.65821 * 3 2 1 5 5 H 1.48495 * 109.47294 * 34.65943 * 3 2 1 6 6 H 1.48503 * 109.47422 * 154.65862 * 3 2 1 7 7 C 1.38813 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00199 * 170.71253 * 7 2 1 9 9 N 1.36939 * 119.99839 * 350.72067 * 7 2 1 10 10 C 1.46876 * 125.36720 * 350.22667 * 9 7 2 11 11 C 1.54191 * 106.39730 * 197.80560 * 10 9 7 12 12 H 1.09000 * 109.64906 * 89.89448 * 11 10 9 13 13 O 1.40787 * 110.22883 * 210.70920 * 11 10 9 14 14 C 1.41322 * 118.39565 * 67.67215 * 13 11 10 15 15 C 1.51974 * 111.53601 * 56.95061 * 14 13 11 16 16 N 1.44965 * 111.88407 * 319.32991 * 15 14 13 17 17 C 1.34776 * 117.32007 * 203.67895 * 16 15 14 18 18 O 1.21284 * 120.00045 * 176.63326 * 17 16 15 19 19 C 1.50698 * 120.00390 * 356.62995 * 17 16 15 20 20 C 1.52999 * 109.47613 * 180.02562 * 19 17 16 21 21 C 1.52995 * 117.50231 * 243.62375 * 20 19 17 22 22 C 1.52995 * 60.00144 * 252.50734 * 21 20 19 23 23 C 1.43705 * 125.27214 * 23.66849 * 16 15 14 24 24 H 1.09003 * 108.58076 * 106.66218 * 23 16 15 25 25 C 1.46793 * 125.36286 * 170.18240 * 9 7 2 26 26 H 0.96994 * 119.99999 * 359.97438 * 1 2 3 27 27 H 1.09004 * 110.06591 * 317.03848 * 10 9 7 28 28 H 1.09002 * 110.07258 * 78.56943 * 10 9 7 29 29 H 1.08999 * 109.06494 * 177.47376 * 14 13 11 30 30 H 1.09002 * 109.06877 * 296.48860 * 14 13 11 31 31 H 1.09008 * 108.99998 * 79.94667 * 15 14 13 32 32 H 1.08996 * 108.99987 * 198.70789 * 15 14 13 33 33 H 1.09006 * 109.47322 * 300.00232 * 19 17 16 34 34 H 1.09003 * 109.47123 * 59.99640 * 19 17 16 35 35 H 1.09006 * 115.54654 * 29.32862 * 20 19 17 36 36 H 1.09010 * 117.49702 * 359.97438 * 21 20 19 37 37 H 1.08997 * 117.50083 * 145.01567 * 21 20 19 38 38 H 1.08994 * 117.50059 * 252.50933 * 22 21 20 39 39 H 1.09003 * 117.50163 * 107.48501 * 22 21 20 40 40 H 1.08996 * 109.83108 * 298.43615 * 25 9 7 41 41 H 1.08995 * 109.82426 * 59.31793 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3993 2.1033 -1.3955 5 1 1.5004 2.6222 0.7962 6 1 3.5936 1.4137 0.5992 7 6 2.0103 -1.2021 -0.0005 8 1 3.0797 -1.2082 -0.1515 9 7 1.3390 -2.3804 0.1902 10 6 -0.0648 -2.5016 0.6046 11 6 -0.2437 -3.9439 1.1196 12 1 -0.0314 -3.9805 2.1881 13 8 -1.5592 -4.3858 0.8827 14 6 -1.9701 -4.5869 -0.4545 15 6 -1.0667 -5.5756 -1.1729 16 7 0.3293 -5.3733 -0.8388 17 6 1.2468 -5.8104 -1.7241 18 8 2.4263 -5.6119 -1.5229 19 6 0.8072 -6.5457 -2.9639 20 6 2.0353 -6.9288 -3.7921 21 6 2.1698 -6.3092 -5.1845 22 6 1.8077 -7.7884 -5.0372 23 6 0.8132 -4.7446 0.3594 24 1 1.2279 -5.5132 1.0118 25 6 1.9089 -3.7213 0.0117 26 1 -0.4850 0.8400 0.0004 27 1 -0.2823 -1.7902 1.4014 28 1 -0.7227 -2.3238 -0.2461 29 1 -2.9910 -4.9687 -0.4596 30 1 -1.9439 -3.6336 -0.9823 31 1 -1.3555 -6.5887 -0.8926 32 1 -1.1950 -5.4565 -2.2487 33 1 0.2660 -7.4478 -2.6786 34 1 0.1555 -5.9029 -3.5557 35 1 2.9510 -7.0968 -3.2250 36 1 1.3831 -5.6288 -5.5107 37 1 3.1741 -6.0693 -5.5337 38 1 2.5737 -8.5216 -5.2895 39 1 0.7830 -8.0810 -5.2663 40 1 2.2241 -3.8544 -1.0232 41 1 2.7618 -3.8522 0.6776 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082975251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:07 Heat of formation + Delta-G solvation = -27.167338 kcal Electronic energy + Delta-G solvation = -23309.935357 eV Core-core repulsion = 19998.401562 eV Total energy + Delta-G solvation = -3311.533795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22059 -39.96549 -38.03832 -37.57999 -36.15664 -34.37468 -31.80122 -30.82616 -29.55667 -28.53597 -26.48135 -24.70397 -23.26392 -23.10645 -21.88414 -21.01430 -19.84443 -19.14705 -18.26661 -18.26365 -17.02130 -16.94581 -16.60856 -16.29347 -16.06437 -15.70999 -15.18093 -14.97174 -14.86133 -14.46729 -14.23990 -13.97106 -13.59533 -13.32202 -13.02839 -12.88861 -12.80529 -12.42448 -12.34037 -12.25001 -12.16092 -12.14456 -11.91621 -11.64621 -11.25209 -10.87533 -10.80630 -10.73933 -10.37158 -9.54863 -8.89328 -7.93880 -5.29784 1.41637 1.43315 1.53721 1.59841 1.86914 2.44363 2.74474 2.92734 3.24350 3.34257 3.59958 3.71487 3.76858 3.78694 3.93964 4.03789 4.07765 4.20928 4.22502 4.36778 4.38236 4.47152 4.58979 4.65340 4.74572 4.77720 4.82113 4.88406 5.01311 5.06444 5.08072 5.28519 5.33288 5.37280 5.43977 5.57275 5.65720 6.12402 6.26931 6.42312 7.02357 7.18510 7.69111 8.32620 9.17142 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.005814 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.738200 B = 4814.485073 C = 5808.314774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.250 4.250 8 H 0.072 0.928 9 N -0.620 5.620 10 C 0.164 3.836 11 C 0.088 3.912 12 H 0.125 0.875 13 O -0.373 6.373 14 C 0.048 3.952 15 C 0.072 3.928 16 N -0.596 5.596 17 C 0.497 3.503 18 O -0.569 6.569 19 C -0.095 4.095 20 C -0.161 4.161 21 C -0.193 4.193 22 C -0.151 4.151 23 C 0.124 3.876 24 H 0.084 0.916 25 C 0.123 3.877 26 H 0.250 0.750 27 H 0.028 0.972 28 H 0.010 0.990 29 H 0.149 0.851 30 H 0.029 0.971 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.044 0.956 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.297 -17.380 -6.652 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.251 4.251 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.379 4.379 8 H 0.089 0.911 9 N -0.348 5.348 10 C 0.039 3.961 11 C 0.028 3.972 12 H 0.142 0.858 13 O -0.290 6.290 14 C -0.029 4.029 15 C -0.049 4.049 16 N -0.330 5.330 17 C 0.288 3.712 18 O -0.448 6.448 19 C -0.135 4.135 20 C -0.180 4.180 21 C -0.230 4.230 22 C -0.187 4.187 23 C 0.018 3.982 24 H 0.101 0.899 25 C -0.002 4.002 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.028 0.972 29 H 0.167 0.833 30 H 0.048 0.952 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.062 0.938 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.898 -17.112 -6.373 18.906 hybrid contribution 0.904 1.620 -0.085 1.858 sum -3.993 -15.491 -6.458 17.252 Atomic orbital electron populations 1.70150 1.06260 1.25661 1.57233 1.25649 0.96579 1.00976 1.01870 0.85069 0.77828 0.78975 0.77468 1.21212 1.21253 1.19599 1.19335 0.91395 0.84122 1.43078 0.91062 1.44521 1.09429 1.01037 1.79820 1.21437 0.85400 0.92763 0.96521 1.22681 0.81618 0.92681 1.00206 0.85777 1.86844 1.28113 1.86379 1.27620 1.22611 1.00058 0.97817 0.82387 1.21999 0.79205 1.01554 1.02187 1.46711 1.07920 1.58308 1.20051 1.21509 0.85429 0.78907 0.85357 1.90644 1.19478 1.57320 1.77376 1.21314 0.98299 1.01687 0.92151 1.21996 0.99183 1.06583 0.90205 1.23107 1.02943 0.97490 0.99475 1.23078 1.04030 0.92820 0.98815 1.21150 0.94968 0.94645 0.87441 0.89867 1.21850 0.94530 0.83914 0.99886 0.94065 0.95390 0.97189 0.83312 0.95247 0.87672 0.87411 0.85087 0.87246 0.89173 0.88399 0.89564 0.87969 0.86479 0.93808 0.96110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.98 10.62 21.65 0.23 -57.75 16 2 C -0.06 -3.36 5.41 84.86 0.46 -2.91 16 3 Si 0.98 47.34 29.56 68.60 2.03 49.37 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.25 -15.06 10.22 84.03 0.86 -14.21 16 8 H 0.07 4.23 7.85 -2.91 -0.02 4.21 16 9 N -0.62 -34.44 3.39 -696.22 -2.36 -36.79 16 10 C 0.16 8.41 4.99 86.71 0.43 8.85 16 11 C 0.09 3.42 3.93 30.95 0.12 3.54 16 12 H 0.12 4.50 8.14 -2.39 -0.02 4.48 16 13 O -0.37 -12.51 10.25 -145.86 -1.49 -14.01 16 14 C 0.05 1.24 6.74 71.64 0.48 1.72 16 15 C 0.07 1.56 5.86 86.33 0.51 2.06 16 16 N -0.60 -18.62 3.06 -808.54 -2.48 -21.10 16 17 C 0.50 15.78 7.02 87.66 0.62 16.39 16 18 O -0.57 -23.24 12.58 -3.04 -0.04 -23.28 16 19 C -0.10 -1.94 4.55 29.85 0.14 -1.81 16 20 C -0.16 -3.59 5.41 -10.80 -0.06 -3.65 16 21 C -0.19 -3.97 10.18 30.59 0.31 -3.66 16 22 C -0.15 -2.31 10.25 30.59 0.31 -2.00 16 23 C 0.12 4.68 3.32 45.76 0.15 4.83 16 24 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 25 C 0.12 5.94 6.01 86.63 0.52 6.46 16 26 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.03 1.60 7.26 -2.38 -0.02 1.58 16 28 H 0.01 0.57 6.12 -2.39 -0.01 0.56 16 29 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.03 0.96 6.73 -2.39 -0.02 0.94 16 31 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.11 1.77 6.33 -2.39 -0.02 1.76 16 33 H 0.13 1.73 8.08 -2.38 -0.02 1.71 16 34 H 0.11 1.90 6.86 -2.39 -0.02 1.88 16 35 H 0.09 2.53 7.31 -2.38 -0.02 2.51 16 36 H 0.10 1.90 8.03 -2.38 -0.02 1.88 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.04 2.31 5.17 -2.39 -0.01 2.29 16 41 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -77.15 317.85 1.77 -75.38 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.02 Total: 12.54 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 4.85 Total: 15.64 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -4.60 Total: -115.64 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.53 Total: -37.29 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -77.15 1.77 -75.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082975251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.214 kcal (2) G-P(sol) polarization free energy of solvation -77.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds