Wall clock time and date at job start Tue Mar 31 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47423 * 125.64947 * 179.72313 * 9 7 2 11 11 C 1.55126 * 104.72644 * 155.81496 * 10 9 7 12 12 H 1.08999 * 110.90597 * 155.26931 * 11 10 9 13 13 N 1.46497 * 111.19437 * 279.19408 * 11 10 9 14 14 C 1.34779 * 119.99330 * 267.18705 * 13 11 10 15 15 O 1.21282 * 120.00404 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99599 * 179.97438 * 14 13 11 17 17 C 1.52999 * 115.54981 * 179.91014 * 16 14 13 18 18 C 1.53002 * 117.49951 * 34.32852 * 17 16 14 19 19 C 1.53003 * 117.49893 * 325.67214 * 17 16 14 20 20 C 1.53001 * 117.50077 * 34.20558 * 16 14 13 21 21 C 1.53003 * 117.49985 * 325.58195 * 16 14 13 22 22 C 1.55163 * 101.48347 * 37.29376 * 11 10 9 23 23 H 1.09000 * 110.72026 * 82.69430 * 22 11 10 24 24 O 1.42897 * 110.87042 * 205.89825 * 22 11 10 25 25 C 1.47028 * 125.64822 * 0.02631 * 9 7 2 26 26 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.36397 * 274.74801 * 10 9 7 28 28 H 1.09001 * 110.36637 * 37.06230 * 10 9 7 29 29 H 0.96998 * 120.00442 * 87.18372 * 13 11 10 30 30 H 1.09004 * 115.55126 * 180.02562 * 17 16 14 31 31 H 1.08997 * 117.49682 * 0.02562 * 18 17 16 32 32 H 1.09000 * 117.49689 * 145.01965 * 18 17 16 33 33 H 1.08999 * 117.49775 * 214.98279 * 19 17 16 34 34 H 1.09001 * 117.49964 * 359.97328 * 19 17 16 35 35 H 1.09006 * 117.49807 * 359.97438 * 20 16 14 36 36 H 1.08998 * 117.50317 * 145.01564 * 20 16 14 37 37 H 1.08997 * 117.49827 * 214.97961 * 21 16 14 38 38 H 1.08995 * 117.49641 * 359.97438 * 21 16 14 39 39 H 0.96703 * 113.99837 * 175.06309 * 24 22 11 40 40 H 1.08997 * 109.88118 * 300.44238 * 25 9 7 41 41 H 1.09001 * 109.87916 * 61.60512 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 1.9333 -3.7312 -0.0010 11 6 0.8541 -4.6550 0.6224 12 1 0.9846 -5.6848 0.2901 13 7 0.8664 -4.5717 2.0850 14 6 1.6010 -5.4439 2.8033 15 8 2.2516 -6.2979 2.2390 16 6 1.6141 -5.3580 4.3078 17 6 2.4800 -6.3986 5.0207 18 6 3.7708 -6.8384 4.3270 19 6 2.5738 -7.7902 4.3917 20 6 0.3236 -4.9174 5.0016 21 6 1.5204 -3.9664 4.9368 22 6 -0.4485 -4.0440 0.0415 23 1 -0.6356 -4.4198 -0.9644 24 8 -1.5621 -4.3137 0.8953 25 6 -0.1376 -2.5327 0.0106 26 1 -0.4849 0.8401 0.0004 27 1 2.1581 -4.0415 -1.0214 28 1 2.8377 -3.7409 0.6073 29 1 0.3458 -3.8889 2.5363 30 1 2.4892 -6.3367 6.1090 31 1 4.0033 -6.3861 3.3629 32 1 4.6294 -7.0660 4.9588 33 1 2.6452 -8.6435 5.0661 34 1 2.0182 -7.9645 3.4703 35 1 -0.5349 -4.6893 4.3697 36 1 0.0910 -5.3690 5.9660 37 1 2.0753 -3.7923 5.8587 38 1 1.4497 -3.1130 4.2624 39 1 -2.3845 -3.8892 0.6150 40 1 -0.5542 -2.0504 0.8949 41 1 -0.5579 -2.0861 -0.8905 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083550352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:11 Heat of formation + Delta-G solvation = 0.860765 kcal Electronic energy + Delta-G solvation = -23095.839870 eV Core-core repulsion = 19785.521464 eV Total energy + Delta-G solvation = -3310.318406 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31792 -38.35232 -36.67184 -35.53364 -35.05378 -33.33530 -31.51298 -28.49608 -27.16790 -24.87934 -24.23453 -22.63066 -22.18272 -21.86783 -20.45563 -19.83943 -19.33008 -17.08419 -16.77118 -16.48205 -15.95552 -15.40493 -14.74776 -14.65999 -14.38596 -13.96573 -13.74825 -13.28519 -12.94121 -12.75547 -12.43056 -12.18394 -12.02918 -11.63804 -11.50332 -11.30142 -11.26160 -11.02805 -10.86829 -10.76852 -10.74675 -10.23643 -10.13293 -9.97903 -9.86445 -9.34280 -9.32292 -9.19983 -8.78163 -8.47570 -6.93039 -5.80460 -3.13937 2.75225 3.36067 3.40840 3.41569 3.50558 3.77409 4.31224 4.40084 4.49416 4.57125 4.67202 4.99093 5.13572 5.21324 5.25366 5.38309 5.39353 5.43323 5.48154 5.63963 5.64318 5.79833 5.89817 5.90229 5.92188 6.07342 6.10120 6.11680 6.24542 6.36680 6.53187 6.57616 6.58146 7.02841 7.28582 7.40407 7.67745 7.98158 8.05174 8.14114 8.63572 9.11902 9.71954 10.35895 11.31305 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.005354 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.707560 B = 5228.160644 C = 5670.437365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.123 3.877 11 C 0.142 3.858 12 H 0.093 0.907 13 N -0.689 5.689 14 C 0.549 3.451 15 O -0.546 6.546 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.168 4.168 19 C -0.168 4.168 20 C -0.156 4.156 21 C -0.155 4.155 22 C 0.063 3.937 23 H 0.066 0.934 24 O -0.563 6.563 25 C 0.150 3.850 26 H 0.253 0.747 27 H 0.032 0.968 28 H 0.049 0.951 29 H 0.405 0.595 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.377 0.623 40 H 0.057 0.943 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 -10.245 8.196 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.327 5.327 10 C -0.004 4.004 11 C 0.036 3.964 12 H 0.111 0.889 13 N -0.338 5.338 14 C 0.335 3.665 15 O -0.425 6.425 16 C -0.127 4.127 17 C -0.133 4.133 18 C -0.204 4.204 19 C -0.205 4.205 20 C -0.193 4.193 21 C -0.192 4.192 22 C 0.003 3.997 23 H 0.084 0.916 24 O -0.368 6.368 25 C 0.025 3.975 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.241 0.759 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.224 0.776 40 H 0.075 0.925 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.210 -10.955 8.088 13.619 hybrid contribution -0.222 1.691 -0.160 1.713 sum -0.432 -9.264 7.928 12.201 Atomic orbital electron populations 1.69912 1.04874 1.25240 1.57213 1.24775 0.95741 0.97660 1.02118 0.86180 0.78462 0.83040 0.77973 1.21135 1.21578 1.21155 1.19025 0.90451 0.82202 1.43825 0.90393 1.44303 1.01021 0.99974 1.87435 1.22053 0.94983 0.86015 0.97321 1.22195 0.94763 0.99561 0.79909 0.88926 1.45479 1.47967 1.33805 1.06584 1.19346 0.78889 0.80890 0.87359 1.90594 1.43284 1.36389 1.72220 1.20946 1.02061 0.98178 0.91533 1.21343 0.99866 0.95081 0.96994 1.23044 0.90790 1.03736 1.02858 1.23028 1.02882 0.91591 1.02987 1.23092 0.91458 1.02547 1.02225 1.23130 1.01201 0.91974 1.02938 1.23561 0.85342 0.98545 0.92235 0.91599 1.86396 1.20358 1.75608 1.54446 1.21859 0.85510 0.88260 1.01877 0.93673 0.95063 0.93246 0.75915 0.87649 0.87221 0.89891 0.89947 0.87363 0.87810 0.87922 0.87832 0.87540 0.77568 0.92544 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.88 10.31 55.49 0.57 -25.31 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.13 10.28 -15.06 -0.15 -6.29 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.61 3.39 -169.93 -0.58 -15.19 16 10 C 0.12 2.58 6.95 -2.41 -0.02 2.57 16 11 C 0.14 2.61 3.31 -65.66 -0.22 2.40 16 12 H 0.09 1.68 7.54 -51.93 -0.39 1.29 16 13 N -0.69 -12.04 4.62 -51.61 -0.24 -12.28 16 14 C 0.55 9.41 7.24 -10.98 -0.08 9.33 16 15 O -0.55 -10.44 11.47 5.56 0.06 -10.38 16 16 C -0.12 -1.74 2.47 -155.66 -0.38 -2.12 16 17 C -0.11 -1.48 5.85 -90.62 -0.53 -2.01 16 18 C -0.17 -2.30 9.66 -26.69 -0.26 -2.56 16 19 C -0.17 -2.25 9.66 -26.69 -0.26 -2.50 16 20 C -0.16 -1.83 9.59 -26.73 -0.26 -2.09 16 21 C -0.16 -1.95 9.59 -26.73 -0.26 -2.21 16 22 C 0.06 1.13 4.11 -24.89 -0.10 1.03 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 O -0.56 -8.95 12.69 -35.23 -0.45 -9.39 16 25 C 0.15 3.37 5.13 -3.06 -0.02 3.35 16 26 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.41 7.07 6.58 -40.82 -0.27 6.80 16 30 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.11 1.80 6.28 -51.93 -0.33 1.48 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.11 1.70 6.28 -51.93 -0.33 1.37 16 35 H 0.10 1.26 7.54 -51.93 -0.39 0.87 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.11 1.51 7.55 -51.93 -0.39 1.12 16 39 H 0.38 4.62 9.11 45.56 0.42 5.03 16 40 H 0.06 1.40 7.30 -51.93 -0.38 1.02 16 41 H 0.05 1.16 7.50 -51.93 -0.39 0.77 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -30.17 329.65 -8.68 -38.85 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -5.38 Total: 13.53 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.62 Total: -1.39 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.24 Total: -52.78 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.38 Total: -19.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.17 -8.68 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083550352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.715 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds