Wall clock time and date at job start Tue Mar 31 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47423 * 125.64947 * 179.72313 * 9 7 2 11 11 C 1.55126 * 104.72644 * 155.81496 * 10 9 7 12 12 H 1.08999 * 110.90597 * 155.26931 * 11 10 9 13 13 N 1.46497 * 111.19437 * 279.19408 * 11 10 9 14 14 C 1.34779 * 119.99330 * 267.18705 * 13 11 10 15 15 O 1.21282 * 120.00404 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99599 * 179.97438 * 14 13 11 17 17 C 1.52999 * 115.54981 * 179.91014 * 16 14 13 18 18 C 1.53002 * 117.49951 * 34.32852 * 17 16 14 19 19 C 1.53003 * 117.49893 * 325.67214 * 17 16 14 20 20 C 1.53001 * 117.50077 * 34.20558 * 16 14 13 21 21 C 1.53003 * 117.49985 * 325.58195 * 16 14 13 22 22 C 1.55163 * 101.48347 * 37.29376 * 11 10 9 23 23 H 1.09000 * 110.72026 * 82.69430 * 22 11 10 24 24 O 1.42897 * 110.87042 * 205.89825 * 22 11 10 25 25 C 1.47028 * 125.64822 * 0.02631 * 9 7 2 26 26 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.36397 * 274.74801 * 10 9 7 28 28 H 1.09001 * 110.36637 * 37.06230 * 10 9 7 29 29 H 0.96998 * 120.00442 * 87.18372 * 13 11 10 30 30 H 1.09004 * 115.55126 * 180.02562 * 17 16 14 31 31 H 1.08997 * 117.49682 * 0.02562 * 18 17 16 32 32 H 1.09000 * 117.49689 * 145.01965 * 18 17 16 33 33 H 1.08999 * 117.49775 * 214.98279 * 19 17 16 34 34 H 1.09001 * 117.49964 * 359.97328 * 19 17 16 35 35 H 1.09006 * 117.49807 * 359.97438 * 20 16 14 36 36 H 1.08998 * 117.50317 * 145.01564 * 20 16 14 37 37 H 1.08997 * 117.49827 * 214.97961 * 21 16 14 38 38 H 1.08995 * 117.49641 * 359.97438 * 21 16 14 39 39 H 0.96703 * 113.99837 * 175.06309 * 24 22 11 40 40 H 1.08997 * 109.88118 * 300.44238 * 25 9 7 41 41 H 1.09001 * 109.87916 * 61.60512 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 1.9333 -3.7312 -0.0010 11 6 0.8541 -4.6550 0.6224 12 1 0.9846 -5.6848 0.2901 13 7 0.8664 -4.5717 2.0850 14 6 1.6010 -5.4439 2.8033 15 8 2.2516 -6.2979 2.2390 16 6 1.6141 -5.3580 4.3078 17 6 2.4800 -6.3986 5.0207 18 6 3.7708 -6.8384 4.3270 19 6 2.5738 -7.7902 4.3917 20 6 0.3236 -4.9174 5.0016 21 6 1.5204 -3.9664 4.9368 22 6 -0.4485 -4.0440 0.0415 23 1 -0.6356 -4.4198 -0.9644 24 8 -1.5621 -4.3137 0.8953 25 6 -0.1376 -2.5327 0.0106 26 1 -0.4849 0.8401 0.0004 27 1 2.1581 -4.0415 -1.0214 28 1 2.8377 -3.7409 0.6073 29 1 0.3458 -3.8889 2.5363 30 1 2.4892 -6.3367 6.1090 31 1 4.0033 -6.3861 3.3629 32 1 4.6294 -7.0660 4.9588 33 1 2.6452 -8.6435 5.0661 34 1 2.0182 -7.9645 3.4703 35 1 -0.5349 -4.6893 4.3697 36 1 0.0910 -5.3690 5.9660 37 1 2.0753 -3.7923 5.8587 38 1 1.4497 -3.1130 4.2624 39 1 -2.3845 -3.8892 0.6150 40 1 -0.5542 -2.0504 0.8949 41 1 -0.5579 -2.0861 -0.8905 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083550352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:11 Heat of formation + Delta-G solvation = -19.915172 kcal Electronic energy + Delta-G solvation = -23096.740782 eV Core-core repulsion = 19785.521464 eV Total energy + Delta-G solvation = -3311.219318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59528 -39.83013 -37.93420 -36.66322 -36.58794 -34.91065 -33.31861 -30.25555 -28.86899 -26.52208 -25.62864 -23.61765 -23.42860 -22.87970 -22.23329 -21.32701 -20.63264 -18.96792 -18.17180 -17.75353 -17.38621 -16.81272 -16.30632 -15.95924 -15.83795 -15.60478 -15.11103 -14.68020 -14.43225 -14.11421 -14.01559 -13.76343 -13.28973 -13.16402 -13.13287 -12.74902 -12.60976 -12.54929 -12.32852 -12.14196 -12.01755 -11.91104 -11.74511 -11.67866 -11.04481 -10.88183 -10.76745 -10.50036 -10.35258 -9.99416 -8.91893 -7.88001 -5.23190 1.46054 1.47681 1.49719 1.54186 2.17941 2.46694 2.70080 3.13212 3.29569 3.32860 3.47624 3.56517 3.59281 3.81967 3.93698 3.99372 4.02507 4.26230 4.32626 4.39460 4.40407 4.55592 4.60959 4.72235 4.80538 4.86576 4.88916 4.90073 4.98412 5.08547 5.16963 5.38352 5.39293 5.45841 5.48465 5.58324 5.67861 6.14144 6.60503 6.84837 7.06939 7.27861 7.71030 8.34508 9.21365 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.005354 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.707560 B = 5228.160644 C = 5670.437365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.055 4.055 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.615 5.615 10 C 0.124 3.876 11 C 0.148 3.852 12 H 0.100 0.900 13 N -0.690 5.690 14 C 0.540 3.460 15 O -0.570 6.570 16 C -0.144 4.144 17 C -0.104 4.104 18 C -0.179 4.179 19 C -0.168 4.168 20 C -0.135 4.135 21 C -0.151 4.151 22 C 0.086 3.914 23 H 0.088 0.912 24 O -0.561 6.561 25 C 0.163 3.837 26 H 0.249 0.751 27 H 0.040 0.960 28 H 0.034 0.966 29 H 0.405 0.595 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.395 0.605 40 H 0.029 0.971 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 -10.935 9.951 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.249 4.249 3 Si 0.803 3.197 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.343 5.343 10 C -0.003 4.003 11 C 0.042 3.958 12 H 0.118 0.882 13 N -0.339 5.339 14 C 0.329 3.671 15 O -0.450 6.450 16 C -0.147 4.147 17 C -0.122 4.122 18 C -0.216 4.216 19 C -0.205 4.205 20 C -0.172 4.172 21 C -0.189 4.189 22 C 0.025 3.975 23 H 0.105 0.895 24 O -0.368 6.368 25 C 0.038 3.962 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.240 0.760 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.246 0.754 40 H 0.047 0.953 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.416 -11.662 9.845 15.268 hybrid contribution -0.152 1.889 -0.739 2.034 sum -0.568 -9.774 9.106 13.370 Atomic orbital electron populations 1.70100 1.05916 1.25444 1.57872 1.25508 0.96617 1.00495 1.02253 0.85219 0.77257 0.79177 0.78045 1.20660 1.21720 1.20593 1.19310 0.90738 0.83595 1.43660 0.90710 1.44497 1.02041 1.00500 1.87266 1.22123 0.95194 0.85256 0.97704 1.22046 0.94042 0.99076 0.80665 0.88218 1.45506 1.48249 1.34035 1.06155 1.20003 0.78016 0.80156 0.88962 1.90587 1.44044 1.37274 1.73142 1.20990 1.04571 0.99713 0.89426 1.21510 0.98374 0.94034 0.98296 1.22979 0.92130 1.04457 1.01986 1.22978 1.02175 0.92875 1.02490 1.23205 0.90206 1.00905 1.02850 1.23154 1.02180 0.90435 1.03100 1.23238 0.85883 0.94844 0.93528 0.89466 1.86367 1.20712 1.75521 1.54235 1.21631 0.84265 0.91245 0.99075 0.94210 0.94224 0.94784 0.75954 0.84480 0.90671 0.87668 0.87367 0.90197 0.88431 0.84912 0.85433 0.89804 0.75445 0.95304 0.96440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.88 10.31 21.65 0.22 -53.65 16 2 C -0.06 -3.03 5.49 84.86 0.47 -2.57 16 3 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.24 -13.45 10.28 84.03 0.86 -12.59 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.62 -30.61 3.39 -691.54 -2.35 -32.96 16 10 C 0.12 5.26 6.95 86.93 0.60 5.86 16 11 C 0.15 5.44 3.31 46.46 0.15 5.59 16 12 H 0.10 3.57 7.54 -2.39 -0.02 3.55 16 13 N -0.69 -24.13 4.62 -435.59 -2.01 -26.14 16 14 C 0.54 18.51 7.24 87.66 0.63 19.14 16 15 O -0.57 -22.17 11.47 -3.04 -0.03 -22.20 16 16 C -0.14 -3.81 2.47 -52.93 -0.13 -3.94 16 17 C -0.10 -2.43 5.85 -10.79 -0.06 -2.50 16 18 C -0.18 -4.72 9.66 30.62 0.30 -4.43 16 19 C -0.17 -4.24 9.66 30.62 0.30 -3.94 16 20 C -0.13 -2.80 9.59 30.60 0.29 -2.51 16 21 C -0.15 -3.53 9.59 30.60 0.29 -3.24 16 22 C 0.09 2.99 4.11 31.78 0.13 3.12 16 23 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 24 O -0.56 -17.00 12.69 -148.98 -1.89 -18.89 16 25 C 0.16 7.45 5.13 86.73 0.44 7.89 16 26 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.40 14.16 6.58 -92.71 -0.61 13.55 16 30 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.07 2.53 6.28 -2.39 -0.01 2.51 16 32 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.49 6.28 -2.39 -0.01 2.48 16 35 H 0.10 2.18 7.54 -2.38 -0.02 2.16 16 36 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.08 2.36 7.55 -2.39 -0.02 2.34 16 39 H 0.40 9.00 9.11 -74.06 -0.67 8.33 16 40 H 0.03 1.46 7.30 -2.39 -0.02 1.45 16 41 H 0.02 0.89 7.50 -2.39 -0.02 0.87 16 Total: -1.00 -66.33 329.65 0.02 -66.31 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.23 Total: 34.85 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.28 Total: 5.89 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -4.13 Total: -112.76 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.93 Total: -41.09 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.33 0.02 -66.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083550352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.394 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds