Wall clock time and date at job start Tue Mar 31 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99573 * 2 1 4 4 H 1.48501 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47248 * 60.00110 * 3 2 1 6 6 H 1.48500 * 109.46962 * 300.00113 * 3 2 1 7 7 C 1.38805 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.27873 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28149 * 7 2 1 10 10 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 11 11 C 1.54316 * 107.27320 * 181.02283 * 10 9 7 12 12 H 1.09001 * 110.72071 * 140.73918 * 11 10 9 13 13 N 1.46507 * 110.71772 * 263.82953 * 11 10 9 14 14 C 1.34771 * 119.99771 * 273.54514 * 13 11 10 15 15 O 1.21279 * 120.00439 * 0.02562 * 14 13 11 16 16 C 1.50702 * 119.99585 * 180.02562 * 14 13 11 17 17 H 1.09006 * 115.56190 * 34.26274 * 16 14 13 18 18 C 1.53123 * 117.51351 * 248.46054 * 16 14 13 19 19 C 1.52455 * 59.85758 * 252.55286 * 18 16 14 20 20 C 1.53253 * 128.58390 * 117.60190 * 19 18 16 21 21 C 1.53891 * 86.88528 * 114.94405 * 20 19 18 22 22 C 1.53258 * 128.58216 * 242.39603 * 19 18 16 23 23 C 1.55154 * 102.94286 * 22.19320 * 11 10 9 24 24 H 1.08999 * 111.00490 * 82.61206 * 23 11 10 25 25 O 1.42902 * 111.00576 * 206.42507 * 23 11 10 26 26 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 27 27 H 0.97003 * 119.99184 * 185.85128 * 1 2 3 28 28 H 1.08999 * 109.88184 * 300.44569 * 10 9 7 29 29 H 1.09003 * 109.88022 * 61.60367 * 10 9 7 30 30 H 0.97003 * 119.99332 * 93.55160 * 13 11 10 31 31 H 1.09005 * 117.51443 * 0.02562 * 18 16 14 32 32 H 1.09004 * 117.51171 * 145.10035 * 18 16 14 33 33 H 1.09000 * 113.64406 * 229.43947 * 20 19 18 34 34 H 1.08996 * 113.65034 * 0.44563 * 20 19 18 35 35 H 1.09002 * 113.58799 * 270.39724 * 21 20 19 36 36 H 1.08995 * 113.59353 * 139.56979 * 21 20 19 37 37 H 1.08997 * 113.64777 * 359.56073 * 22 19 18 38 38 H 1.09003 * 113.64497 * 130.46628 * 22 19 18 39 39 H 0.96698 * 114.00042 * 180.02562 * 25 23 11 40 40 H 1.09002 * 110.36499 * 274.75332 * 26 9 7 41 41 H 1.09005 * 110.36367 * 37.06338 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8913 2.3965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0002 -1.2542 0.4281 9 7 1.4399 -2.3218 -0.5446 10 6 1.9211 -3.7000 -0.3693 11 6 0.9852 -4.6190 -1.1824 12 1 1.5524 -5.4097 -1.6735 13 7 -0.0568 -5.1877 -0.3238 14 6 0.1808 -6.3234 0.3620 15 8 1.2572 -6.8742 0.2688 16 6 -0.8913 -6.9087 1.2447 17 1 -1.9142 -6.7803 0.8905 18 6 -0.6567 -6.8782 2.7575 19 6 -0.5618 -8.1947 1.9945 20 6 0.6512 -9.1159 1.8250 21 6 -0.1387 -10.1645 2.6280 22 6 -1.4191 -9.4552 2.1529 23 6 0.3685 -3.6508 -2.2262 24 1 1.0379 -3.5140 -3.0755 25 8 -0.9138 -4.1115 -2.6573 26 6 0.2380 -2.3458 -1.3979 27 1 -0.4849 -0.8358 0.0856 28 1 2.9416 -3.7866 -0.7424 29 1 1.8852 -3.9739 0.6851 30 1 -0.9177 -4.7470 -0.2491 31 1 0.2729 -6.4344 3.1141 32 1 -1.5254 -6.7294 3.3989 33 1 0.8381 -9.4068 0.7913 34 1 1.5461 -8.7585 2.3342 35 1 0.0213 -10.1009 3.7043 36 1 -0.0335 -11.1788 2.2430 37 1 -2.1837 -9.3696 2.9250 38 1 -1.8096 -9.8395 1.2107 39 1 -1.3383 -3.5387 -3.3106 40 1 -0.6625 -2.3715 -0.7842 41 1 0.2238 -1.4780 -2.0575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083818621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:15 Heat of formation + Delta-G solvation = -9.234386 kcal Electronic energy + Delta-G solvation = -22477.797280 eV Core-core repulsion = 19167.041116 eV Total energy + Delta-G solvation = -3310.756164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.30781 -38.97575 -37.56567 -35.32164 -33.84578 -33.65146 -31.67797 -28.43272 -27.45595 -25.73149 -24.57013 -23.77048 -23.12086 -20.57503 -20.38485 -19.78085 -18.39511 -17.66522 -17.26847 -16.73645 -15.89059 -15.28628 -15.11577 -14.68638 -14.65702 -14.16173 -13.70602 -13.55709 -13.06952 -12.73099 -12.57627 -12.50784 -12.33398 -12.03781 -11.64197 -11.60553 -11.47262 -11.27065 -10.80816 -10.58411 -10.42916 -10.38311 -10.11804 -10.09037 -9.81649 -9.79698 -9.48092 -9.36545 -8.64836 -8.47878 -7.03802 -6.15823 -3.19265 2.75330 3.34552 3.49001 3.51519 3.65358 3.78231 4.25365 4.41738 4.55729 4.57366 4.73409 4.75521 4.83958 5.06138 5.20384 5.26351 5.28880 5.32286 5.51502 5.54413 5.60328 5.63157 5.65887 5.72688 5.78341 5.93824 5.98741 6.01740 6.11422 6.24726 6.33915 6.40072 6.57391 6.69658 6.82291 6.96780 7.68528 7.84419 7.88967 8.41409 8.56303 8.94455 9.74709 10.26005 11.17442 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.004074 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.585432 B = 6870.884187 C = 7270.777531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.026 4.026 3 Si 1.070 2.930 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.335 4.335 8 H 0.069 0.931 9 N -0.600 5.600 10 C 0.127 3.873 11 C 0.146 3.854 12 H 0.093 0.907 13 N -0.697 5.697 14 C 0.543 3.457 15 O -0.545 6.545 16 C -0.176 4.176 17 H 0.121 0.879 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.081 4.081 21 C -0.142 4.142 22 C -0.099 4.099 23 C 0.073 3.927 24 H 0.076 0.924 25 O -0.562 6.562 26 C 0.119 3.881 27 H 0.268 0.732 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.405 0.595 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.379 0.621 40 H 0.034 0.966 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 -15.382 0.490 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.227 4.227 3 Si 0.900 3.100 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.463 4.463 8 H 0.087 0.913 9 N -0.328 5.328 10 C 0.001 3.999 11 C 0.041 3.959 12 H 0.111 0.889 13 N -0.347 5.347 14 C 0.330 3.670 15 O -0.423 6.423 16 C -0.197 4.197 17 H 0.139 0.861 18 C -0.158 4.158 19 C -0.128 4.128 20 C -0.119 4.119 21 C -0.180 4.180 22 C -0.136 4.136 23 C 0.013 3.987 24 H 0.093 0.907 25 O -0.367 6.367 26 C -0.007 4.007 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.240 0.760 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.226 0.774 40 H 0.051 0.949 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.535 -14.523 0.794 14.968 hybrid contribution -0.438 -0.705 -0.265 0.871 sum -3.974 -15.228 0.529 15.747 Atomic orbital electron populations 1.70754 1.06589 1.30191 1.48760 1.25746 0.96467 1.00969 0.99525 0.83465 0.74389 0.75489 0.76697 1.21804 1.22139 1.21659 1.19844 0.99469 0.87535 1.39410 0.91290 1.44430 1.30775 1.01277 1.56361 1.21766 0.95491 0.85196 0.97487 1.21959 0.89113 0.94834 0.90022 0.88943 1.45633 1.17769 1.25324 1.46004 1.19550 0.87686 0.80141 0.79657 1.90654 1.25602 1.61277 1.64796 1.22135 0.99471 1.03477 0.94661 0.86147 1.22787 1.03783 0.97901 0.91377 1.22258 1.00149 0.87778 1.02583 1.22304 0.95413 0.93518 1.00620 1.22814 0.96705 0.98199 1.00240 1.22500 0.96305 0.93494 1.01310 1.23493 0.84594 0.94999 0.95628 0.90662 1.86383 1.33156 1.53117 1.64024 1.22212 0.91189 0.94533 0.92769 0.91995 0.94448 0.94886 0.76048 0.87996 0.87720 0.89506 0.91290 0.90233 0.91404 0.91367 0.89718 0.77398 0.94860 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 12.82 55.49 0.71 -26.58 16 2 C -0.03 -0.74 5.09 -17.43 -0.09 -0.83 16 3 Si 1.07 25.24 30.00 -169.99 -5.10 20.14 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.34 -9.45 10.05 -15.06 -0.15 -9.60 16 8 H 0.07 1.96 7.96 -52.49 -0.42 1.54 16 9 N -0.60 -15.08 3.33 -169.94 -0.57 -15.64 16 10 C 0.13 2.79 6.98 -3.07 -0.02 2.77 16 11 C 0.15 2.71 3.14 -66.10 -0.21 2.51 16 12 H 0.09 1.70 7.69 -51.93 -0.40 1.30 16 13 N -0.70 -11.98 4.78 -52.03 -0.25 -12.22 16 14 C 0.54 9.21 7.61 -10.99 -0.08 9.12 16 15 O -0.55 -10.65 14.87 5.56 0.08 -10.57 16 16 C -0.18 -2.36 6.19 -91.98 -0.57 -2.93 16 17 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 18 C -0.12 -1.47 10.23 -26.95 -0.28 -1.75 16 19 C -0.13 -1.53 2.87 -154.80 -0.45 -1.98 16 20 C -0.08 -1.00 6.47 -26.14 -0.17 -1.17 16 21 C -0.14 -1.34 8.08 -25.81 -0.21 -1.55 16 22 C -0.10 -0.94 8.10 -26.14 -0.21 -1.15 16 23 C 0.07 1.29 4.23 -24.47 -0.10 1.18 16 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 25 O -0.56 -8.47 12.63 -35.23 -0.44 -8.92 16 26 C 0.12 2.64 4.93 -2.41 -0.01 2.63 16 27 H 0.27 7.93 5.83 -40.82 -0.24 7.69 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.78 8.04 -51.93 -0.42 0.36 16 30 H 0.40 6.65 8.20 -40.82 -0.33 6.32 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.38 4.20 9.12 45.56 0.42 4.62 16 40 H 0.03 0.79 6.84 -51.93 -0.36 0.43 16 41 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -32.72 334.61 -8.66 -41.38 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.59 Total: 10.11 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.55 Total: -2.74 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.10 Total: -54.45 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.36 Total: -19.48 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.10 Total: 20.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.72 -8.66 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083818621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.148 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds