Wall clock time and date at job start Tue Mar 31 2020 02:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99573 * 2 1 4 4 H 1.48501 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47248 * 60.00110 * 3 2 1 6 6 H 1.48500 * 109.46962 * 300.00113 * 3 2 1 7 7 C 1.38805 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.27873 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28149 * 7 2 1 10 10 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 11 11 C 1.54316 * 107.27320 * 181.02283 * 10 9 7 12 12 H 1.09001 * 110.72071 * 140.73918 * 11 10 9 13 13 N 1.46507 * 110.71772 * 263.82953 * 11 10 9 14 14 C 1.34771 * 119.99771 * 273.54514 * 13 11 10 15 15 O 1.21279 * 120.00439 * 0.02562 * 14 13 11 16 16 C 1.50702 * 119.99585 * 180.02562 * 14 13 11 17 17 H 1.09006 * 115.56190 * 34.26274 * 16 14 13 18 18 C 1.53123 * 117.51351 * 248.46054 * 16 14 13 19 19 C 1.52455 * 59.85758 * 252.55286 * 18 16 14 20 20 C 1.53253 * 128.58390 * 117.60190 * 19 18 16 21 21 C 1.53891 * 86.88528 * 114.94405 * 20 19 18 22 22 C 1.53258 * 128.58216 * 242.39603 * 19 18 16 23 23 C 1.55154 * 102.94286 * 22.19320 * 11 10 9 24 24 H 1.08999 * 111.00490 * 82.61206 * 23 11 10 25 25 O 1.42902 * 111.00576 * 206.42507 * 23 11 10 26 26 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 27 27 H 0.97003 * 119.99184 * 185.85128 * 1 2 3 28 28 H 1.08999 * 109.88184 * 300.44569 * 10 9 7 29 29 H 1.09003 * 109.88022 * 61.60367 * 10 9 7 30 30 H 0.97003 * 119.99332 * 93.55160 * 13 11 10 31 31 H 1.09005 * 117.51443 * 0.02562 * 18 16 14 32 32 H 1.09004 * 117.51171 * 145.10035 * 18 16 14 33 33 H 1.09000 * 113.64406 * 229.43947 * 20 19 18 34 34 H 1.08996 * 113.65034 * 0.44563 * 20 19 18 35 35 H 1.09002 * 113.58799 * 270.39724 * 21 20 19 36 36 H 1.08995 * 113.59353 * 139.56979 * 21 20 19 37 37 H 1.08997 * 113.64777 * 359.56073 * 22 19 18 38 38 H 1.09003 * 113.64497 * 130.46628 * 22 19 18 39 39 H 0.96698 * 114.00042 * 180.02562 * 25 23 11 40 40 H 1.09002 * 110.36499 * 274.75332 * 26 9 7 41 41 H 1.09005 * 110.36367 * 37.06338 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8913 2.3965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0002 -1.2542 0.4281 9 7 1.4399 -2.3218 -0.5446 10 6 1.9211 -3.7000 -0.3693 11 6 0.9852 -4.6190 -1.1824 12 1 1.5524 -5.4097 -1.6735 13 7 -0.0568 -5.1877 -0.3238 14 6 0.1808 -6.3234 0.3620 15 8 1.2572 -6.8742 0.2688 16 6 -0.8913 -6.9087 1.2447 17 1 -1.9142 -6.7803 0.8905 18 6 -0.6567 -6.8782 2.7575 19 6 -0.5618 -8.1947 1.9945 20 6 0.6512 -9.1159 1.8250 21 6 -0.1387 -10.1645 2.6280 22 6 -1.4191 -9.4552 2.1529 23 6 0.3685 -3.6508 -2.2262 24 1 1.0379 -3.5140 -3.0755 25 8 -0.9138 -4.1115 -2.6573 26 6 0.2380 -2.3458 -1.3979 27 1 -0.4849 -0.8358 0.0856 28 1 2.9416 -3.7866 -0.7424 29 1 1.8852 -3.9739 0.6851 30 1 -0.9177 -4.7470 -0.2491 31 1 0.2729 -6.4344 3.1141 32 1 -1.5254 -6.7294 3.3989 33 1 0.8381 -9.4068 0.7913 34 1 1.5461 -8.7585 2.3342 35 1 0.0213 -10.1009 3.7043 36 1 -0.0335 -11.1788 2.2430 37 1 -2.1837 -9.3696 2.9250 38 1 -1.8096 -9.8395 1.2107 39 1 -1.3383 -3.5387 -3.3106 40 1 -0.6625 -2.3715 -0.7842 41 1 0.2238 -1.4780 -2.0575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083818621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:14 Heat of formation + Delta-G solvation = -32.676130 kcal Electronic energy + Delta-G solvation = -22478.813791 eV Core-core repulsion = 19167.041116 eV Total energy + Delta-G solvation = -3311.772674 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53069 -40.30207 -38.92266 -36.87773 -35.46583 -34.65788 -33.52978 -30.21122 -29.17589 -26.59975 -26.39198 -25.14000 -23.95546 -22.39348 -21.77310 -21.23757 -19.71322 -19.32281 -18.60326 -18.06743 -17.19180 -16.62913 -16.21304 -16.09220 -15.95545 -15.71337 -15.42866 -15.24984 -14.73905 -14.26757 -14.07776 -13.81326 -13.38950 -13.19966 -13.03772 -12.90645 -12.72828 -12.54883 -12.46373 -12.33350 -11.96194 -11.89409 -11.75256 -11.30870 -11.05484 -11.02807 -10.84659 -10.62823 -10.59017 -10.12492 -9.12051 -8.38536 -5.38985 1.46845 1.57318 1.64504 1.81836 2.04829 2.57822 2.75132 2.91097 3.15789 3.39660 3.46462 3.60676 3.66821 3.73325 3.80465 3.87937 3.95342 4.06764 4.10970 4.34059 4.44197 4.49782 4.60029 4.70652 4.74917 4.78779 4.84965 4.88822 4.90504 4.97367 5.04597 5.09160 5.15801 5.38227 5.44369 5.51136 5.57539 6.24898 6.52175 6.73353 6.81678 7.21031 7.62429 8.16384 8.94341 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.004074 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.585432 B = 6870.884187 C = 7270.777531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.072 4.072 3 Si 1.121 2.879 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.352 4.352 8 H 0.058 0.942 9 N -0.618 5.618 10 C 0.128 3.872 11 C 0.154 3.846 12 H 0.100 0.900 13 N -0.696 5.696 14 C 0.537 3.463 15 O -0.576 6.576 16 C -0.187 4.187 17 H 0.144 0.856 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.095 4.095 21 C -0.130 4.130 22 C -0.087 4.087 23 C 0.100 3.900 24 H 0.094 0.906 25 O -0.557 6.557 26 C 0.126 3.874 27 H 0.258 0.742 28 H 0.038 0.962 29 H 0.009 0.991 30 H 0.409 0.591 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.400 0.600 40 H 0.017 0.983 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 -16.356 0.259 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.268 4.268 3 Si 0.945 3.055 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.480 4.480 8 H 0.076 0.924 9 N -0.347 5.347 10 C 0.002 3.998 11 C 0.047 3.953 12 H 0.118 0.882 13 N -0.346 5.346 14 C 0.326 3.674 15 O -0.457 6.457 16 C -0.208 4.208 17 H 0.161 0.839 18 C -0.155 4.155 19 C -0.130 4.130 20 C -0.132 4.132 21 C -0.167 4.167 22 C -0.124 4.124 23 C 0.039 3.961 24 H 0.112 0.888 25 O -0.364 6.364 26 C 0.000 4.000 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.027 0.973 30 H 0.245 0.755 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.250 0.750 40 H 0.035 0.965 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.686 -15.520 0.546 16.221 hybrid contribution -0.056 -0.436 -0.173 0.472 sum -4.742 -15.956 0.374 16.650 Atomic orbital electron populations 1.70863 1.07359 1.29625 1.50735 1.27117 0.96594 1.04123 0.98951 0.82785 0.74047 0.71786 0.76866 1.20148 1.21749 1.20899 1.20073 0.99259 0.89054 1.39582 0.92373 1.44635 1.31519 1.01762 1.56750 1.21799 0.96553 0.84686 0.96749 1.21771 0.89155 0.94402 0.89933 0.88226 1.45646 1.17516 1.25458 1.45975 1.20235 0.88133 0.79657 0.79421 1.90635 1.27182 1.62079 1.65764 1.22188 0.99209 1.04748 0.94657 0.83855 1.22853 1.03951 0.97911 0.90792 1.22510 1.00926 0.88170 1.01373 1.22343 0.95272 0.95441 1.00168 1.22787 0.95558 0.98052 1.00315 1.22517 0.96405 0.91150 1.02337 1.23109 0.86075 0.91663 0.95214 0.88836 1.86357 1.31989 1.53310 1.64771 1.22146 0.89364 0.96207 0.92258 0.93167 0.94400 0.97302 0.75548 0.90106 0.84899 0.91001 0.93354 0.89317 0.89942 0.89364 0.88922 0.74955 0.96539 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.65 12.82 21.65 0.28 -56.37 16 2 C -0.07 -4.09 5.09 84.86 0.43 -3.66 16 3 Si 1.12 50.97 30.00 68.60 2.06 53.02 16 4 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.35 -20.21 10.05 84.03 0.84 -19.37 16 8 H 0.06 3.38 7.96 -2.91 -0.02 3.36 16 9 N -0.62 -31.72 3.33 -691.57 -2.30 -34.02 16 10 C 0.13 5.77 6.98 86.73 0.61 6.37 16 11 C 0.15 5.65 3.14 46.17 0.14 5.79 16 12 H 0.10 3.58 7.69 -2.39 -0.02 3.56 16 13 N -0.70 -23.71 4.78 -436.93 -2.09 -25.80 16 14 C 0.54 18.20 7.61 87.66 0.67 18.87 16 15 O -0.58 -22.96 14.87 -3.03 -0.04 -23.01 16 16 C -0.19 -4.79 6.19 -11.68 -0.07 -4.87 16 17 H 0.14 2.98 8.14 -2.38 -0.02 2.96 16 18 C -0.12 -2.73 10.23 30.45 0.31 -2.42 16 19 C -0.13 -2.93 2.87 -52.37 -0.15 -3.08 16 20 C -0.09 -2.32 6.47 30.98 0.20 -2.12 16 21 C -0.13 -2.16 8.08 31.19 0.25 -1.91 16 22 C -0.09 -1.40 8.10 30.98 0.25 -1.15 16 23 C 0.10 3.40 4.23 32.06 0.14 3.54 16 24 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 25 O -0.56 -15.53 12.63 -148.98 -1.88 -17.41 16 26 C 0.13 5.64 4.93 86.93 0.43 6.07 16 27 H 0.26 15.60 5.83 -92.71 -0.54 15.06 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.01 0.44 8.04 -2.39 -0.02 0.42 16 30 H 0.41 13.20 8.20 -92.71 -0.76 12.44 16 31 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.13 2.30 8.14 -2.38 -0.02 2.29 16 33 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.40 7.78 9.12 -74.06 -0.68 7.11 16 40 H 0.02 0.81 6.84 -2.39 -0.02 0.79 16 41 H 0.03 1.67 7.73 -2.38 -0.02 1.65 16 Total: -1.00 -71.98 334.61 -0.09 -72.07 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.16 Total: 29.44 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 4.05 Total: 2.07 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -4.11 Total: -116.19 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.93 Total: -40.42 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.06 Total: 53.02 kcal Total: -71.98 -0.09 -72.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083818621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.395 kcal (2) G-P(sol) polarization free energy of solvation -71.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds