Wall clock time and date at job start Tue Mar 31 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48506 * 109.47190 * 269.99899 * 3 2 1 5 5 H 1.48500 * 109.47472 * 30.00191 * 3 2 1 6 6 H 1.48507 * 109.46699 * 150.00067 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 13 13 N 1.46497 * 110.72131 * 219.45483 * 11 10 9 14 14 C 1.34781 * 119.99953 * 268.52482 * 13 11 10 15 15 O 1.21281 * 120.00226 * 359.97438 * 14 13 11 16 16 C 1.50698 * 119.99963 * 180.02562 * 14 13 11 17 17 H 1.08998 * 115.55470 * 34.32623 * 16 14 13 18 18 C 1.53006 * 117.49848 * 248.61856 * 16 14 13 19 19 C 1.52998 * 60.00021 * 252.50884 * 18 16 14 20 20 H 1.09001 * 117.49646 * 107.48908 * 19 18 16 21 21 C 1.52997 * 117.50294 * 252.51008 * 19 18 16 22 22 C 1.52994 * 117.50100 * 197.24738 * 21 19 18 23 23 C 1.52994 * 60.00132 * 252.50431 * 22 21 19 24 24 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 25 25 H 1.09000 * 111.03743 * 153.59413 * 24 11 10 26 26 O 1.42902 * 111.00280 * 277.42723 * 24 11 10 27 27 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 28 28 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 30 30 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 31 31 H 0.96996 * 120.00123 * 88.52155 * 13 11 10 32 32 H 1.09001 * 117.49871 * 0.02562 * 18 16 14 33 33 H 1.09005 * 117.49625 * 145.02029 * 18 16 14 34 34 H 1.09008 * 115.54606 * 342.95405 * 21 19 18 35 35 H 1.09000 * 117.49801 * 0.02562 * 22 21 19 36 36 H 1.09003 * 117.49961 * 145.01887 * 22 21 19 37 37 H 1.09000 * 117.50153 * 252.51319 * 23 22 21 38 38 H 1.09007 * 117.49799 * 107.48549 * 23 22 21 39 39 H 0.96703 * 114.00194 * 173.65090 * 26 24 11 40 40 H 1.09002 * 110.36696 * 85.26297 * 27 9 7 41 41 H 1.08995 * 110.36608 * 323.05133 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 1.9294 -3.7314 -0.0017 11 6 0.7740 -4.7541 0.0246 12 1 0.5415 -5.0993 -0.9827 13 7 1.1014 -5.8836 0.8983 14 6 1.7020 -6.9775 0.3892 15 8 1.9711 -7.0270 -0.7924 16 6 2.0382 -8.1395 1.2878 17 1 1.3334 -8.3267 2.0980 18 6 3.5181 -8.4169 1.5602 19 6 2.7194 -9.3520 0.6499 20 1 2.9243 -9.3091 -0.4198 21 6 2.3593 -10.7342 1.1982 22 6 1.9323 -11.8042 0.1915 23 6 0.8940 -11.1668 1.1170 24 6 -0.4048 -3.9318 0.6089 25 1 -1.3630 -4.3301 0.2754 26 8 -0.3405 -3.8871 2.0358 27 6 -0.1416 -2.5331 -0.0028 28 1 -0.4849 0.8401 -0.0004 29 1 2.5552 -3.8562 0.8821 30 1 2.5277 -3.8711 -0.9020 31 1 0.8859 -5.8441 1.8433 32 1 4.2484 -7.7586 1.0897 33 1 3.7870 -8.7865 2.5498 34 1 2.9328 -11.0596 2.0662 35 1 1.9082 -11.5236 -0.8615 36 1 2.2248 -12.8340 0.3970 37 1 0.5036 -11.7771 1.9314 38 1 0.1864 -10.4666 0.6729 39 1 -0.9983 -3.3057 2.4412 40 1 -0.5266 -2.4860 -1.0215 41 1 -0.5999 -1.7581 0.6114 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083849282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:22 Heat of formation + Delta-G solvation = -5.898313 kcal Electronic energy + Delta-G solvation = -22000.799822 eV Core-core repulsion = 18690.188320 eV Total energy + Delta-G solvation = -3310.611501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.03472 -38.49442 -37.48467 -35.00463 -34.68142 -33.89954 -31.64973 -28.62493 -27.19954 -25.15244 -24.12868 -23.29729 -22.57288 -20.74420 -20.44230 -19.80705 -19.58016 -17.53626 -16.91148 -16.65735 -15.93474 -15.29290 -15.05011 -14.82155 -14.48126 -14.29656 -14.01075 -13.20821 -13.10803 -12.92893 -12.49403 -12.36776 -11.83705 -11.76429 -11.58695 -11.34111 -11.12507 -11.11575 -11.01720 -10.85362 -10.61332 -10.34234 -10.21222 -10.03661 -9.87920 -9.83863 -9.56915 -9.23440 -8.70763 -8.64072 -6.86042 -5.70204 -3.10058 2.65732 3.22881 3.39198 3.44228 3.46035 3.58197 3.84883 4.39351 4.47516 4.59165 4.61621 4.73059 4.88738 4.90101 5.12196 5.16083 5.27584 5.36268 5.39829 5.43236 5.48947 5.59176 5.67635 5.72017 5.83410 5.92272 5.93850 5.96512 6.07684 6.14555 6.29833 6.57727 6.69667 6.96554 7.25529 7.54963 7.70588 7.87502 8.12739 8.30463 8.51666 9.17257 9.78003 10.41910 11.34927 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037325 B = 0.003408 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.983240 B = 8213.849598 C = 8542.843699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.131 3.869 11 C 0.142 3.858 12 H 0.101 0.899 13 N -0.702 5.702 14 C 0.538 3.462 15 O -0.548 6.548 16 C -0.182 4.182 17 H 0.122 0.878 18 C -0.144 4.144 19 C -0.092 4.092 20 H 0.119 0.881 21 C -0.126 4.126 22 C -0.175 4.175 23 C -0.177 4.177 24 C 0.067 3.933 25 H 0.058 0.942 26 O -0.562 6.562 27 C 0.126 3.874 28 H 0.252 0.748 29 H 0.030 0.970 30 H 0.027 0.973 31 H 0.409 0.591 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.380 0.620 40 H 0.022 0.978 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 -19.118 5.409 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.004 3.996 11 C 0.036 3.964 12 H 0.119 0.881 13 N -0.353 5.353 14 C 0.324 3.676 15 O -0.426 6.426 16 C -0.203 4.203 17 H 0.140 0.860 18 C -0.181 4.181 19 C -0.111 4.111 20 H 0.137 0.863 21 C -0.144 4.144 22 C -0.212 4.212 23 C -0.214 4.214 24 C 0.007 3.993 25 H 0.076 0.924 26 O -0.369 6.369 27 C 0.000 4.000 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.244 0.756 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.228 0.772 40 H 0.040 0.960 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.711 -19.317 4.461 19.838 hybrid contribution -0.181 1.352 0.478 1.446 sum 0.530 -17.965 4.939 18.639 Atomic orbital electron populations 1.69717 1.04908 1.24811 1.58258 1.24761 0.95781 0.97709 1.02557 0.86024 0.78517 0.83103 0.77585 1.21621 1.21650 1.20690 1.19103 0.90592 0.82264 1.42419 0.90403 1.44353 1.01409 0.99676 1.86892 1.21642 0.93925 0.85578 0.98497 1.22138 0.95177 0.85002 0.94050 0.88142 1.45758 1.60480 1.15769 1.13270 1.19679 0.77183 0.82874 0.87904 1.90682 1.53746 1.81618 1.16600 1.22290 0.98335 0.96783 1.02914 0.85965 1.23041 0.91803 1.02127 1.01160 1.21806 1.02084 0.87842 0.99358 0.86308 1.21772 0.98030 0.93503 1.01132 1.22986 1.03762 0.97496 0.96977 1.22980 0.92105 1.03747 1.02604 1.23571 0.95584 0.98701 0.81452 0.92414 1.86209 1.61684 1.69915 1.19062 1.22623 0.85969 0.92406 0.99008 0.93719 0.95217 0.95481 0.75581 0.88037 0.87831 0.87458 0.88551 0.88823 0.88843 0.88553 0.77200 0.95989 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.51 10.09 55.49 0.56 -25.95 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.92 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.09 10.28 -15.06 -0.15 -6.24 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.50 3.40 -169.86 -0.58 -16.08 16 10 C 0.13 2.95 7.01 -2.92 -0.02 2.93 16 11 C 0.14 2.69 3.20 -66.10 -0.21 2.48 16 12 H 0.10 1.98 7.55 -51.93 -0.39 1.58 16 13 N -0.70 -11.28 5.07 -52.03 -0.26 -11.55 16 14 C 0.54 8.55 7.61 -10.98 -0.08 8.46 16 15 O -0.55 -10.69 15.90 5.56 0.09 -10.61 16 16 C -0.18 -2.14 5.83 -91.77 -0.54 -2.67 16 17 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.14 -1.49 9.95 -26.73 -0.27 -1.75 16 19 C -0.09 -1.00 5.38 -90.62 -0.49 -1.49 16 20 H 0.12 1.51 7.67 -51.93 -0.40 1.11 16 21 C -0.13 -1.10 5.87 -90.63 -0.53 -1.63 16 22 C -0.18 -1.43 10.25 -26.74 -0.27 -1.71 16 23 C -0.18 -1.48 10.18 -26.74 -0.27 -1.75 16 24 C 0.07 1.24 4.29 -24.58 -0.11 1.14 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 O -0.56 -9.63 12.24 -35.23 -0.43 -10.06 16 27 C 0.13 2.96 5.62 -2.53 -0.01 2.94 16 28 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.41 5.96 7.59 -40.82 -0.31 5.65 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.38 5.36 9.11 45.56 0.42 5.78 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.12 2.97 5.86 -51.93 -0.30 2.66 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -32.07 340.06 -9.18 -41.25 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.60 Total: 10.51 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -3.05 Total: 0.24 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.28 Total: -53.58 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.34 Total: -20.66 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.07 -9.18 -41.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083849282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.350 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds