Wall clock time and date at job start Tue Mar 31 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48506 * 109.47190 * 269.99899 * 3 2 1 5 5 H 1.48500 * 109.47472 * 30.00191 * 3 2 1 6 6 H 1.48507 * 109.46699 * 150.00067 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 13 13 N 1.46497 * 110.72131 * 219.45483 * 11 10 9 14 14 C 1.34781 * 119.99953 * 268.52482 * 13 11 10 15 15 O 1.21281 * 120.00226 * 359.97438 * 14 13 11 16 16 C 1.50698 * 119.99963 * 180.02562 * 14 13 11 17 17 H 1.08998 * 115.55470 * 34.32623 * 16 14 13 18 18 C 1.53006 * 117.49848 * 248.61856 * 16 14 13 19 19 C 1.52998 * 60.00021 * 252.50884 * 18 16 14 20 20 H 1.09001 * 117.49646 * 107.48908 * 19 18 16 21 21 C 1.52997 * 117.50294 * 252.51008 * 19 18 16 22 22 C 1.52994 * 117.50100 * 197.24738 * 21 19 18 23 23 C 1.52994 * 60.00132 * 252.50431 * 22 21 19 24 24 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 25 25 H 1.09000 * 111.03743 * 153.59413 * 24 11 10 26 26 O 1.42902 * 111.00280 * 277.42723 * 24 11 10 27 27 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 28 28 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 30 30 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 31 31 H 0.96996 * 120.00123 * 88.52155 * 13 11 10 32 32 H 1.09001 * 117.49871 * 0.02562 * 18 16 14 33 33 H 1.09005 * 117.49625 * 145.02029 * 18 16 14 34 34 H 1.09008 * 115.54606 * 342.95405 * 21 19 18 35 35 H 1.09000 * 117.49801 * 0.02562 * 22 21 19 36 36 H 1.09003 * 117.49961 * 145.01887 * 22 21 19 37 37 H 1.09000 * 117.50153 * 252.51319 * 23 22 21 38 38 H 1.09007 * 117.49799 * 107.48549 * 23 22 21 39 39 H 0.96703 * 114.00194 * 173.65090 * 26 24 11 40 40 H 1.09002 * 110.36696 * 85.26297 * 27 9 7 41 41 H 1.08995 * 110.36608 * 323.05133 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 1.9294 -3.7314 -0.0017 11 6 0.7740 -4.7541 0.0246 12 1 0.5415 -5.0993 -0.9827 13 7 1.1014 -5.8836 0.8983 14 6 1.7020 -6.9775 0.3892 15 8 1.9711 -7.0270 -0.7924 16 6 2.0382 -8.1395 1.2878 17 1 1.3334 -8.3267 2.0980 18 6 3.5181 -8.4169 1.5602 19 6 2.7194 -9.3520 0.6499 20 1 2.9243 -9.3091 -0.4198 21 6 2.3593 -10.7342 1.1982 22 6 1.9323 -11.8042 0.1915 23 6 0.8940 -11.1668 1.1170 24 6 -0.4048 -3.9318 0.6089 25 1 -1.3630 -4.3301 0.2754 26 8 -0.3405 -3.8871 2.0358 27 6 -0.1416 -2.5331 -0.0028 28 1 -0.4849 0.8401 -0.0004 29 1 2.5552 -3.8562 0.8821 30 1 2.5277 -3.8711 -0.9020 31 1 0.8859 -5.8441 1.8433 32 1 4.2484 -7.7586 1.0897 33 1 3.7870 -8.7865 2.5498 34 1 2.9328 -11.0596 2.0662 35 1 1.9082 -11.5236 -0.8615 36 1 2.2248 -12.8340 0.3970 37 1 0.5036 -11.7771 1.9314 38 1 0.1864 -10.4666 0.6729 39 1 -0.9983 -3.3057 2.4412 40 1 -0.5266 -2.4860 -1.0215 41 1 -0.5999 -1.7581 0.6114 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083849282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:22 Heat of formation + Delta-G solvation = -28.522326 kcal Electronic energy + Delta-G solvation = -22001.780872 eV Core-core repulsion = 18690.188320 eV Total energy + Delta-G solvation = -3311.592552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28967 -39.82202 -38.62912 -36.36684 -35.84145 -35.43573 -33.57533 -30.42952 -28.92435 -26.78615 -25.45391 -24.23167 -23.21143 -22.43690 -21.75023 -21.23034 -20.59764 -19.23708 -18.38387 -18.09657 -16.98184 -16.81207 -16.45744 -16.16297 -15.96245 -15.63402 -15.35105 -14.71225 -14.68469 -14.30081 -14.01476 -13.55468 -13.37151 -13.22587 -12.97164 -12.76286 -12.50951 -12.30038 -12.27650 -12.15051 -11.95797 -11.89414 -11.81318 -11.75935 -11.07208 -10.92604 -10.84335 -10.74883 -10.53286 -10.10407 -8.93498 -7.82687 -5.26436 1.44813 1.46334 1.47402 1.56092 2.02845 2.47469 2.70689 3.05892 3.19644 3.28361 3.53989 3.66907 3.76433 3.83169 3.84862 3.94001 4.07925 4.18230 4.24944 4.29169 4.38099 4.46287 4.55099 4.70962 4.80942 4.81797 4.83918 4.96060 5.00638 5.06815 5.22586 5.31076 5.31365 5.37305 5.43383 5.47957 5.68170 6.22576 6.59086 6.87480 7.06172 7.24767 7.69959 8.33531 9.19413 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037325 B = 0.003408 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.983240 B = 8213.849598 C = 8542.843699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.982 3.018 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.616 5.616 10 C 0.132 3.868 11 C 0.152 3.848 12 H 0.093 0.907 13 N -0.693 5.693 14 C 0.534 3.466 15 O -0.590 6.590 16 C -0.185 4.185 17 H 0.150 0.850 18 C -0.132 4.132 19 C -0.092 4.092 20 H 0.092 0.908 21 C -0.125 4.125 22 C -0.179 4.179 23 C -0.176 4.176 24 C 0.091 3.909 25 H 0.091 0.909 26 O -0.562 6.562 27 C 0.126 3.874 28 H 0.250 0.750 29 H 0.025 0.975 30 H 0.009 0.991 31 H 0.419 0.581 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.396 0.604 40 H -0.001 1.001 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 -20.594 7.334 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.810 3.190 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.343 5.343 10 C 0.005 3.995 11 C 0.046 3.954 12 H 0.111 0.889 13 N -0.344 5.344 14 C 0.322 3.678 15 O -0.471 6.471 16 C -0.206 4.206 17 H 0.167 0.833 18 C -0.169 4.169 19 C -0.111 4.111 20 H 0.110 0.890 21 C -0.143 4.143 22 C -0.216 4.216 23 C -0.213 4.213 24 C 0.031 3.969 25 H 0.109 0.891 26 O -0.370 6.370 27 C 0.000 4.000 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.027 0.973 31 H 0.257 0.743 32 H 0.104 0.896 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.246 0.754 40 H 0.017 0.983 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.661 -20.814 6.422 21.792 hybrid contribution -0.145 1.817 -0.169 1.830 sum 0.516 -18.998 6.252 20.007 Atomic orbital electron populations 1.69935 1.05923 1.25286 1.58332 1.25567 0.96780 1.00668 1.02279 0.85031 0.77613 0.78956 0.77404 1.21510 1.21312 1.19788 1.19391 0.90864 0.83711 1.43149 0.90860 1.44615 1.02611 1.00210 1.86815 1.21679 0.95093 0.85515 0.97228 1.21796 0.93875 0.85205 0.94573 0.88898 1.45636 1.60464 1.14929 1.13354 1.20438 0.75899 0.83514 0.87902 1.90667 1.55246 1.82443 1.18737 1.22293 0.99986 0.95290 1.03022 0.83272 1.23160 0.90245 1.01102 1.02413 1.21776 1.02008 0.89047 0.98277 0.88979 1.21799 0.98597 0.92099 1.01813 1.23059 1.03833 0.98365 0.96336 1.23021 0.91627 1.03609 1.03018 1.23258 0.96602 0.95093 0.81968 0.89094 1.86176 1.62675 1.70254 1.17920 1.22529 0.84590 0.95136 0.97742 0.93993 0.95724 0.97334 0.74339 0.89595 0.84582 0.85346 0.89846 0.87027 0.86974 0.89914 0.75380 0.98286 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.75 10.09 21.65 0.22 -54.53 16 2 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 3 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.24 -13.97 10.28 84.03 0.86 -13.11 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.62 -32.73 3.40 -691.31 -2.35 -35.08 16 10 C 0.13 6.08 7.01 86.68 0.61 6.69 16 11 C 0.15 5.75 3.20 46.18 0.15 5.89 16 12 H 0.09 3.69 7.55 -2.39 -0.02 3.67 16 13 N -0.69 -21.49 5.07 -436.92 -2.22 -23.71 16 14 C 0.53 16.68 7.61 87.66 0.67 17.34 16 15 O -0.59 -23.47 15.90 -3.03 -0.05 -23.52 16 16 C -0.19 -3.99 5.83 -11.54 -0.07 -4.06 16 17 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 18 C -0.13 -2.44 9.95 30.60 0.30 -2.14 16 19 C -0.09 -1.88 5.38 -10.79 -0.06 -1.94 16 20 H 0.09 2.39 7.67 -2.39 -0.02 2.37 16 21 C -0.13 -1.86 5.87 -10.80 -0.06 -1.92 16 22 C -0.18 -2.60 10.25 30.59 0.31 -2.29 16 23 C -0.18 -2.51 10.18 30.59 0.31 -2.20 16 24 C 0.09 3.27 4.29 31.99 0.14 3.41 16 25 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 26 O -0.56 -18.09 12.24 -148.98 -1.82 -19.91 16 27 C 0.13 6.00 5.62 86.86 0.49 6.49 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.02 1.16 8.03 -2.38 -0.02 1.14 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.42 11.31 7.59 -92.71 -0.70 10.60 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.40 10.30 9.11 -74.06 -0.67 9.63 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.09 4.88 5.86 -2.39 -0.01 4.87 16 Total: -1.00 -70.74 340.06 -0.41 -71.15 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.33 Total: 28.58 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.12 Total: 9.23 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -4.35 Total: -113.32 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.87 Total: -43.43 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.74 -0.41 -71.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083849282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.629 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds