Wall clock time and date at job start Tue Mar 31 2020 02:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46686 * 90.00075 * 3 2 1 5 5 H 1.48499 * 109.47518 * 210.00078 * 3 2 1 6 6 H 1.48502 * 109.46873 * 330.00238 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.09001 * 109.44878 * 181.24858 * 12 11 10 14 14 N 1.46497 * 109.46189 * 301.22024 * 12 11 10 15 15 C 1.34777 * 120.00361 * 275.06459 * 14 12 11 16 16 O 1.21616 * 119.99215 * 0.02562 * 15 14 12 17 17 C 1.47098 * 120.00154 * 180.02562 * 15 14 12 18 18 C 1.32610 * 124.61836 * 180.02562 * 17 15 14 19 19 C 1.51117 * 110.75876 * 180.02562 * 18 17 15 20 20 C 1.54576 * 104.83730 * 16.59328 * 19 18 17 21 21 C 1.51108 * 124.61921 * 359.72451 * 17 15 14 22 22 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 23 23 H 1.08999 * 109.49861 * 58.58399 * 22 12 11 24 24 O 1.42899 * 109.52272 * 178.66839 * 22 12 11 25 25 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 26 26 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 28 28 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 29 29 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 30 30 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 31 31 H 0.97006 * 119.99898 * 95.07186 * 14 12 11 32 32 H 1.08005 * 124.62204 * 359.97437 * 18 17 15 33 33 H 1.08997 * 110.36703 * 135.43818 * 19 18 17 34 34 H 1.09004 * 110.36054 * 257.76057 * 19 18 17 35 35 H 1.09001 * 110.98082 * 93.07927 * 20 19 18 36 36 H 1.09004 * 110.98038 * 216.87260 * 20 19 18 37 37 H 1.09001 * 110.36539 * 282.23869 * 21 17 15 38 38 H 1.08998 * 110.36944 * 44.56659 * 21 17 15 39 39 H 0.96700 * 114.00229 * 179.85787 * 24 22 12 40 40 H 1.09004 * 109.58525 * 246.16048 * 25 9 7 41 41 H 1.08999 * 109.58786 * 6.57942 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 0.9832 -5.3888 2.6752 14 7 -0.3098 -5.1576 1.0402 15 6 -1.3531 -5.7794 1.6246 16 8 -1.3610 -5.9526 2.8283 17 6 -2.4820 -6.2483 0.8064 18 6 -3.5523 -6.8686 1.2843 19 6 -4.5148 -7.2108 0.1706 20 6 -3.6821 -7.0833 -1.1254 21 6 -2.5831 -6.0832 -0.6922 22 6 2.0734 -4.6099 0.9881 23 1 2.9048 -4.2393 1.5876 24 8 2.3906 -5.9089 0.4841 25 6 1.8216 -3.6548 -0.1828 26 1 -0.4850 0.8400 0.0004 27 1 0.0986 -1.3293 1.6671 28 1 -0.6750 -2.6418 0.7418 29 1 -0.3892 -3.3692 3.0579 30 1 1.3401 -2.9478 3.0078 31 1 -0.3036 -5.0191 0.0801 32 1 -3.7137 -7.0986 2.3271 33 1 -4.8822 -8.2304 0.2868 34 1 -5.3463 -6.5062 0.1581 35 1 -3.2521 -8.0439 -1.4091 36 1 -4.2829 -6.6715 -1.9364 37 1 -2.8739 -5.0630 -0.9427 38 1 -1.6348 -6.3356 -1.1665 39 1 3.1780 -5.9317 -0.0768 40 1 1.0518 -4.0695 -0.8336 41 1 2.7441 -3.5166 -0.7466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090172746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:38 Heat of formation + Delta-G solvation = -52.766047 kcal Electronic energy + Delta-G solvation = -22912.319821 eV Core-core repulsion = 19599.675982 eV Total energy + Delta-G solvation = -3312.643839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99132 -38.46816 -37.20820 -35.43845 -34.00543 -31.77590 -30.38174 -29.26080 -28.66355 -28.04314 -25.33145 -22.73787 -22.15068 -21.71745 -20.83503 -18.77297 -18.58459 -17.19560 -16.99402 -16.47850 -15.75308 -15.25986 -14.94048 -14.62490 -14.38061 -14.12775 -13.71280 -13.26843 -12.94330 -12.75321 -12.60509 -12.30714 -12.01179 -11.96480 -11.65112 -11.64695 -11.30416 -11.19736 -11.16983 -10.91187 -10.64837 -10.38981 -10.19721 -9.96296 -9.83620 -9.51669 -9.42652 -8.92097 -8.55884 -8.48319 -6.79028 -5.87904 -3.32264 1.54504 3.32929 3.40055 3.40920 3.60026 3.64128 4.35707 4.49538 4.51901 4.59665 4.92741 5.11280 5.26462 5.27752 5.32784 5.45451 5.58443 5.58946 5.66445 5.69991 5.74738 5.78638 5.89790 5.98237 6.07357 6.12516 6.26629 6.36616 6.45085 6.56530 6.61128 6.64640 6.71477 6.99290 7.27816 7.58705 7.70553 7.92007 7.96647 8.34483 8.62686 9.10260 9.72607 10.27987 11.20246 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.004960 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.390047 B = 5643.818824 C = 6170.078276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.586 5.586 10 C 0.172 3.828 11 C -0.153 4.153 12 C 0.165 3.835 13 H 0.078 0.922 14 N -0.697 5.697 15 C 0.563 3.437 16 O -0.555 6.555 17 C -0.181 4.181 18 C -0.088 4.088 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.094 4.094 22 C 0.075 3.925 23 H 0.066 0.934 24 O -0.571 6.571 25 C 0.119 3.881 26 H 0.255 0.745 27 H 0.089 0.911 28 H 0.021 0.979 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.402 0.598 32 H 0.136 0.864 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.373 0.627 40 H 0.022 0.978 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -12.488 -1.672 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.046 3.954 11 C -0.193 4.193 12 C 0.060 3.940 13 H 0.096 0.904 14 N -0.348 5.348 15 C 0.351 3.649 16 O -0.435 6.435 17 C -0.184 4.184 18 C -0.107 4.107 19 C -0.142 4.142 20 C -0.159 4.159 21 C -0.131 4.131 22 C 0.014 3.986 23 H 0.084 0.916 24 O -0.375 6.375 25 C -0.009 4.009 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.238 0.762 32 H 0.153 0.847 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.220 0.780 40 H 0.040 0.960 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.596 -12.599 -0.517 13.421 hybrid contribution 0.957 1.217 -0.728 1.711 sum -3.639 -11.381 -1.245 12.014 Atomic orbital electron populations 1.70031 1.05305 1.25719 1.53202 1.25042 0.95277 0.98483 1.00461 0.86271 0.79082 0.83489 0.77781 1.21323 1.20401 1.21707 1.19173 0.92682 0.84666 1.42399 0.91550 1.43992 1.35873 1.00854 1.50338 1.20705 0.88520 0.98386 0.87784 1.22518 1.01523 0.94793 1.00485 1.20835 0.83873 0.96411 0.92874 0.90350 1.45837 1.19408 1.57879 1.11631 1.17925 0.82210 0.77566 0.87169 1.90742 1.80020 1.58208 1.14560 1.21910 0.96415 1.03658 0.96430 1.23953 0.93224 0.93872 0.99684 1.21450 0.97845 1.02004 0.92856 1.22453 0.96848 0.99502 0.97144 1.21314 0.99782 1.00514 0.91514 1.22753 0.96141 0.82966 0.96696 0.91575 1.86488 1.50374 1.30285 1.70342 1.21533 0.98431 0.87718 0.93183 0.93486 0.89245 0.96066 0.91810 0.91508 0.76155 0.84668 0.90559 0.89831 0.90941 0.90618 0.89830 0.90785 0.78036 0.96029 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 11.19 55.49 0.62 -24.73 16 2 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 3 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -13.89 3.00 -172.58 -0.52 -14.41 16 10 C 0.17 4.01 5.03 -3.94 -0.02 3.99 16 11 C -0.15 -3.07 5.75 -26.83 -0.15 -3.23 16 12 C 0.16 3.06 2.47 -67.89 -0.17 2.89 16 13 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 14 N -0.70 -12.34 4.15 -54.95 -0.23 -12.57 16 15 C 0.56 10.22 7.76 -12.67 -0.10 10.12 16 16 O -0.56 -11.68 16.43 5.26 0.09 -11.59 16 17 C -0.18 -2.65 6.09 -102.73 -0.63 -3.28 16 18 C -0.09 -1.11 10.43 -36.01 -0.38 -1.49 16 19 C -0.10 -0.99 6.80 -26.85 -0.18 -1.17 16 20 C -0.12 -1.15 7.17 -24.97 -0.18 -1.33 16 21 C -0.09 -1.14 6.04 -26.75 -0.16 -1.30 16 22 C 0.08 1.29 3.36 -26.61 -0.09 1.20 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 O -0.57 -8.66 13.21 -35.23 -0.47 -9.13 16 25 C 0.12 2.30 5.85 -3.71 -0.02 2.28 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 28 H 0.02 0.52 7.74 -51.93 -0.40 0.12 16 29 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.40 6.83 5.87 -40.82 -0.24 6.59 16 32 H 0.14 1.71 8.03 -52.48 -0.42 1.29 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.87 7.82 -51.93 -0.41 0.46 16 39 H 0.37 4.03 9.08 45.56 0.41 4.44 16 40 H 0.02 0.42 6.64 -51.93 -0.34 0.08 16 41 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -31.23 328.19 -8.34 -39.57 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.45 Total: 10.03 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.31 Total: 1.82 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.13 Total: -51.72 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.38 Total: -20.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.23 -8.34 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090172746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.194 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds