Wall clock time and date at job start Tue Mar 31 2020 02:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46686 * 90.00075 * 3 2 1 5 5 H 1.48499 * 109.47518 * 210.00078 * 3 2 1 6 6 H 1.48502 * 109.46873 * 330.00238 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.09001 * 109.44878 * 181.24858 * 12 11 10 14 14 N 1.46497 * 109.46189 * 301.22024 * 12 11 10 15 15 C 1.34777 * 120.00361 * 275.06459 * 14 12 11 16 16 O 1.21616 * 119.99215 * 0.02562 * 15 14 12 17 17 C 1.47098 * 120.00154 * 180.02562 * 15 14 12 18 18 C 1.32610 * 124.61836 * 180.02562 * 17 15 14 19 19 C 1.51117 * 110.75876 * 180.02562 * 18 17 15 20 20 C 1.54576 * 104.83730 * 16.59328 * 19 18 17 21 21 C 1.51108 * 124.61921 * 359.72451 * 17 15 14 22 22 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 23 23 H 1.08999 * 109.49861 * 58.58399 * 22 12 11 24 24 O 1.42899 * 109.52272 * 178.66839 * 22 12 11 25 25 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 26 26 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 28 28 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 29 29 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 30 30 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 31 31 H 0.97006 * 119.99898 * 95.07186 * 14 12 11 32 32 H 1.08005 * 124.62204 * 359.97437 * 18 17 15 33 33 H 1.08997 * 110.36703 * 135.43818 * 19 18 17 34 34 H 1.09004 * 110.36054 * 257.76057 * 19 18 17 35 35 H 1.09001 * 110.98082 * 93.07927 * 20 19 18 36 36 H 1.09004 * 110.98038 * 216.87260 * 20 19 18 37 37 H 1.09001 * 110.36539 * 282.23869 * 21 17 15 38 38 H 1.08998 * 110.36944 * 44.56659 * 21 17 15 39 39 H 0.96700 * 114.00229 * 179.85787 * 24 22 12 40 40 H 1.09004 * 109.58525 * 246.16048 * 25 9 7 41 41 H 1.08999 * 109.58786 * 6.57942 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 0.9832 -5.3888 2.6752 14 7 -0.3098 -5.1576 1.0402 15 6 -1.3531 -5.7794 1.6246 16 8 -1.3610 -5.9526 2.8283 17 6 -2.4820 -6.2483 0.8064 18 6 -3.5523 -6.8686 1.2843 19 6 -4.5148 -7.2108 0.1706 20 6 -3.6821 -7.0833 -1.1254 21 6 -2.5831 -6.0832 -0.6922 22 6 2.0734 -4.6099 0.9881 23 1 2.9048 -4.2393 1.5876 24 8 2.3906 -5.9089 0.4841 25 6 1.8216 -3.6548 -0.1828 26 1 -0.4850 0.8400 0.0004 27 1 0.0986 -1.3293 1.6671 28 1 -0.6750 -2.6418 0.7418 29 1 -0.3892 -3.3692 3.0579 30 1 1.3401 -2.9478 3.0078 31 1 -0.3036 -5.0191 0.0801 32 1 -3.7137 -7.0986 2.3271 33 1 -4.8822 -8.2304 0.2868 34 1 -5.3463 -6.5062 0.1581 35 1 -3.2521 -8.0439 -1.4091 36 1 -4.2829 -6.6715 -1.9364 37 1 -2.8739 -5.0630 -0.9427 38 1 -1.6348 -6.3356 -1.1665 39 1 3.1780 -5.9317 -0.0768 40 1 1.0518 -4.0695 -0.8336 41 1 2.7441 -3.5166 -0.7466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090172746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:38 Heat of formation + Delta-G solvation = -74.754118 kcal Electronic energy + Delta-G solvation = -22913.273295 eV Core-core repulsion = 19599.675982 eV Total energy + Delta-G solvation = -3313.597313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38359 -39.76782 -38.43615 -36.96931 -35.62133 -33.56440 -32.03444 -30.52904 -29.94090 -29.10239 -27.18001 -24.27450 -23.71450 -23.28390 -21.75131 -20.28566 -19.93626 -18.80216 -18.20479 -17.97611 -17.01559 -16.82731 -16.42654 -15.99040 -15.94110 -15.65097 -15.37051 -14.90474 -14.45019 -13.93179 -13.80471 -13.60656 -13.53621 -13.29170 -13.05486 -12.89381 -12.76309 -12.58738 -12.37848 -12.18442 -12.06974 -11.99565 -11.99054 -11.85321 -11.32797 -11.06061 -10.92561 -10.52579 -10.14095 -9.80470 -8.73050 -7.89931 -5.36383 0.40468 1.47633 1.50134 1.57701 2.24522 2.31388 2.49169 3.12870 3.26540 3.54762 3.63293 3.66235 3.86849 4.03164 4.11428 4.21435 4.22723 4.32414 4.35535 4.50791 4.65349 4.76501 4.81494 4.85216 4.87783 4.93857 4.98259 5.02228 5.11033 5.17752 5.34717 5.37903 5.40897 5.52524 5.55880 5.62002 5.67682 6.34139 6.56709 6.87634 7.10708 7.22305 7.79400 8.31056 9.16586 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.004960 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.390047 B = 5643.818824 C = 6170.078276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.046 4.046 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.265 1.265 6 H -0.297 1.297 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.600 5.600 10 C 0.186 3.814 11 C -0.140 4.140 12 C 0.165 3.835 13 H 0.072 0.928 14 N -0.694 5.694 15 C 0.556 3.444 16 O -0.593 6.593 17 C -0.217 4.217 18 C -0.068 4.068 19 C -0.101 4.101 20 C -0.115 4.115 21 C -0.092 4.092 22 C 0.096 3.904 23 H 0.072 0.928 24 O -0.571 6.571 25 C 0.119 3.881 26 H 0.250 0.750 27 H 0.054 0.946 28 H 0.001 0.999 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.406 0.594 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.396 0.604 40 H 0.024 0.976 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -13.899 -2.719 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.215 1.215 5 H -0.190 1.190 6 H -0.224 1.224 7 C -0.395 4.395 8 H 0.092 0.908 9 N -0.325 5.325 10 C 0.060 3.940 11 C -0.180 4.180 12 C 0.060 3.940 13 H 0.091 0.909 14 N -0.344 5.344 15 C 0.346 3.654 16 O -0.477 6.477 17 C -0.220 4.220 18 C -0.088 4.088 19 C -0.137 4.137 20 C -0.152 4.152 21 C -0.129 4.129 22 C 0.035 3.965 23 H 0.090 0.910 24 O -0.378 6.378 25 C -0.007 4.007 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.242 0.758 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.042 0.958 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.289 -14.042 -1.602 14.769 hybrid contribution 0.857 1.569 -0.391 1.830 sum -3.432 -12.473 -1.993 13.089 Atomic orbital electron populations 1.70179 1.06734 1.25908 1.54972 1.25767 0.95934 1.01475 1.00971 0.85294 0.78247 0.79617 0.77428 1.21504 1.18985 1.22406 1.19538 0.93132 0.85672 1.41162 0.90849 1.44148 1.35639 1.01918 1.50800 1.20374 0.88096 0.97072 0.88464 1.22317 1.01344 0.95209 0.99126 1.20736 0.85052 0.94892 0.93318 0.90943 1.45808 1.19275 1.57685 1.11641 1.18551 0.82859 0.76867 0.87112 1.90705 1.80878 1.59876 1.16214 1.21927 0.96250 1.06093 0.97727 1.24351 0.92893 0.91000 1.00585 1.21546 0.97231 1.03737 0.91222 1.22479 0.95930 0.99233 0.97556 1.21316 1.00955 1.00903 0.89737 1.22343 0.95466 0.83324 0.95401 0.91008 1.86459 1.51930 1.28544 1.70879 1.21672 0.98803 0.86160 0.94093 0.94121 0.92729 0.98044 0.92638 0.91031 0.75759 0.85106 0.88054 0.88404 0.89841 0.88826 0.90865 0.90893 0.75415 0.95844 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 11.19 21.65 0.24 -53.67 16 2 C -0.05 -2.46 4.91 84.86 0.42 -2.04 16 3 Si 0.97 43.57 29.59 68.60 2.03 45.60 16 4 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.27 -13.83 9.58 84.03 0.81 -13.03 16 8 H 0.07 3.67 7.89 -2.91 -0.02 3.64 16 9 N -0.60 -28.45 3.00 -699.93 -2.10 -30.55 16 10 C 0.19 8.93 5.03 86.22 0.43 9.37 16 11 C -0.14 -5.72 5.75 30.53 0.18 -5.55 16 12 C 0.17 6.10 2.47 45.02 0.11 6.21 16 13 H 0.07 2.81 7.58 -2.39 -0.02 2.79 16 14 N -0.69 -24.74 4.15 -446.00 -1.85 -26.59 16 15 C 0.56 20.47 7.76 86.57 0.67 21.14 16 16 O -0.59 -25.57 16.43 -4.08 -0.07 -25.64 16 17 C -0.22 -6.28 6.09 -18.57 -0.11 -6.39 16 18 C -0.07 -1.65 10.43 24.66 0.26 -1.39 16 19 C -0.10 -1.59 6.80 30.52 0.21 -1.38 16 20 C -0.11 -1.83 7.17 31.74 0.23 -1.60 16 21 C -0.09 -2.12 6.04 30.58 0.18 -1.94 16 22 C 0.10 3.14 3.36 30.67 0.10 3.24 16 23 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 24 O -0.57 -15.92 13.21 -148.98 -1.97 -17.89 16 25 C 0.12 4.46 5.85 86.36 0.50 4.96 16 26 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.05 3.01 6.04 -2.38 -0.01 2.99 16 28 H 0.00 0.08 7.74 -2.38 -0.02 0.06 16 29 H 0.05 2.33 8.14 -2.38 -0.02 2.32 16 30 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.41 13.78 5.87 -92.70 -0.54 13.24 16 32 H 0.13 3.21 8.03 -2.91 -0.02 3.19 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.65 7.82 -2.39 -0.02 1.63 16 39 H 0.40 7.25 9.08 -74.06 -0.67 6.58 16 40 H 0.02 0.89 6.64 -2.38 -0.02 0.87 16 41 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 Total: -1.00 -68.13 328.19 0.10 -68.03 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.17 Total: 29.09 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 3.99 Total: 11.61 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -3.71 Total: -110.80 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -2.04 Total: -43.53 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.13 0.10 -68.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090172746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.726 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds