Wall clock time and date at job start Tue Mar 31 2020 02:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 120.00209 * 2 1 4 4 H 1.48496 * 109.47417 * 272.90123 * 3 2 1 5 5 H 1.48494 * 109.47176 * 32.90502 * 3 2 1 6 6 H 1.48506 * 109.47195 * 152.90381 * 3 2 1 7 7 C 1.38813 * 119.99377 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00674 * 339.36051 * 7 2 1 9 9 N 1.36944 * 119.99656 * 159.36155 * 7 2 1 10 10 C 1.46933 * 120.62822 * 332.60153 * 9 7 2 11 11 C 1.53195 * 108.77171 * 233.63408 * 10 9 7 12 12 C 1.53045 * 109.31158 * 305.36214 * 11 10 9 13 13 H 1.08995 * 109.45928 * 301.34887 * 12 11 10 14 14 N 1.46503 * 109.45825 * 181.38774 * 12 11 10 15 15 C 1.34783 * 119.99492 * 84.93493 * 14 12 11 16 16 O 1.21611 * 120.00371 * 359.97438 * 15 14 12 17 17 C 1.47102 * 119.99636 * 180.02562 * 15 14 12 18 18 C 1.32611 * 124.62171 * 180.02562 * 17 15 14 19 19 C 1.51109 * 110.76008 * 179.97438 * 18 17 15 20 20 C 1.54577 * 104.83831 * 16.60033 * 19 18 17 21 21 C 1.51121 * 124.61979 * 359.72288 * 17 15 14 22 22 C 1.53034 * 109.53611 * 61.37258 * 12 11 10 23 23 H 1.09005 * 109.50177 * 178.65238 * 22 12 11 24 24 O 1.42896 * 109.50278 * 58.58227 * 22 12 11 25 25 C 1.46927 * 120.63281 * 152.62886 * 9 7 2 26 26 H 0.97001 * 119.99728 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.58422 * 353.41713 * 10 9 7 28 28 H 1.08992 * 109.58358 * 113.70291 * 10 9 7 29 29 H 1.09000 * 109.49282 * 185.41372 * 11 10 9 30 30 H 1.08999 * 109.49965 * 65.31857 * 11 10 9 31 31 H 0.96991 * 120.00222 * 264.93296 * 14 12 11 32 32 H 1.08005 * 124.61799 * 359.97438 * 18 17 15 33 33 H 1.09002 * 110.36342 * 135.43465 * 19 18 17 34 34 H 1.08998 * 110.36902 * 257.75467 * 19 18 17 35 35 H 1.08993 * 110.99052 * 93.07498 * 20 19 18 36 36 H 1.09007 * 110.97819 * 216.83642 * 20 19 18 37 37 H 1.08992 * 110.36313 * 282.24255 * 21 17 15 38 38 H 1.08996 * 110.36250 * 44.56241 * 21 17 15 39 39 H 0.96701 * 114.00612 * 179.97438 * 24 22 12 40 40 H 1.09002 * 109.58235 * 6.57599 * 25 9 7 41 41 H 1.09002 * 109.58260 * 246.15743 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4364 2.0818 -1.3982 5 1 1.4798 2.6340 0.7606 6 1 3.5772 1.4231 0.6377 7 6 2.0101 -1.2022 0.0005 8 1 1.5221 -2.1074 0.3306 9 7 3.3136 -1.2405 -0.4175 10 6 3.8174 -0.2598 -1.3887 11 6 4.4616 -1.0105 -2.5585 12 6 5.5282 -1.9670 -2.0201 13 1 6.2777 -1.4009 -1.4671 14 7 6.1694 -2.6626 -3.1388 15 6 7.1984 -2.0854 -3.7903 16 8 7.5944 -0.9871 -3.4498 17 6 7.8419 -2.7835 -4.9139 18 6 8.8583 -2.3027 -5.6169 19 6 9.2726 -3.2773 -6.6948 20 6 8.0820 -4.2548 -6.8235 21 6 7.4390 -4.1492 -5.4201 22 6 4.8743 -2.9916 -1.0902 23 1 5.6305 -3.6871 -0.7260 24 8 3.8689 -3.7120 -1.8058 25 6 4.2348 -2.2634 0.0962 26 1 -0.4850 0.8401 0.0004 27 1 2.9909 0.3486 -1.7558 28 1 4.5583 0.3806 -0.9104 29 1 4.9241 -0.2956 -3.2389 30 1 3.6986 -1.5787 -3.0905 31 1 5.8533 -3.5384 -3.4105 32 1 9.3262 -1.3449 -5.4428 33 1 9.4371 -2.7539 -7.6366 34 1 10.1731 -3.8136 -6.3956 35 1 7.3903 -3.9274 -7.5996 36 1 8.4295 -5.2699 -7.0161 37 1 7.8275 -4.9271 -4.7629 38 1 6.3539 -4.2212 -5.4944 39 1 3.4121 -4.3803 -1.2768 40 1 3.6837 -2.9768 0.7089 41 1 5.0116 -1.7879 0.6950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090172747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:41 Heat of formation + Delta-G solvation = -46.453765 kcal Electronic energy + Delta-G solvation = -22608.539933 eV Core-core repulsion = 19296.169815 eV Total energy + Delta-G solvation = -3312.370118 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13796 -38.65799 -37.51147 -35.14572 -34.38376 -31.99701 -30.50307 -29.63418 -29.16627 -28.38989 -25.13264 -22.77706 -22.63736 -21.56742 -20.73891 -19.89837 -18.58315 -17.33886 -17.01834 -16.34795 -15.94375 -15.81457 -15.09419 -14.60237 -14.44734 -14.29784 -14.06850 -13.37283 -13.10759 -12.96871 -12.88872 -12.34820 -12.27182 -11.95248 -11.91509 -11.86815 -11.54007 -11.46768 -11.40042 -11.08419 -10.83336 -10.23834 -10.14558 -10.04187 -9.73353 -9.58469 -9.47050 -9.15539 -8.73798 -8.55467 -6.96282 -5.93835 -3.29391 1.29979 3.30990 3.36672 3.37895 3.51544 3.54799 4.27184 4.33486 4.54939 4.57852 4.70823 4.85081 4.95600 5.04834 5.14627 5.27199 5.37285 5.40220 5.42504 5.53060 5.53469 5.59151 5.67277 5.76412 5.88171 5.98044 6.11925 6.15212 6.28191 6.29873 6.36605 6.41580 6.50654 6.67880 6.76729 6.99703 7.70789 7.92044 8.05560 8.32269 8.36934 8.92715 9.72379 10.08871 11.22001 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.004268 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.248982 B = 6558.519515 C = 6962.963496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.257 4.257 8 H 0.085 0.915 9 N -0.596 5.596 10 C 0.129 3.871 11 C -0.137 4.137 12 C 0.161 3.839 13 H 0.092 0.908 14 N -0.712 5.712 15 C 0.560 3.440 16 O -0.546 6.546 17 C -0.189 4.189 18 C -0.081 4.081 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.092 4.092 22 C 0.082 3.918 23 H 0.050 0.950 24 O -0.554 6.554 25 C 0.121 3.879 26 H 0.262 0.738 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.403 0.597 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.376 0.624 40 H 0.071 0.929 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.819 -10.767 -10.628 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.385 4.385 8 H 0.102 0.898 9 N -0.320 5.320 10 C 0.003 3.997 11 C -0.177 4.177 12 C 0.057 3.943 13 H 0.110 0.890 14 N -0.362 5.362 15 C 0.348 3.652 16 O -0.426 6.426 17 C -0.192 4.192 18 C -0.101 4.101 19 C -0.143 4.143 20 C -0.161 4.161 21 C -0.129 4.129 22 C 0.020 3.980 23 H 0.068 0.932 24 O -0.359 6.359 25 C -0.006 4.006 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.238 0.762 32 H 0.155 0.845 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.222 0.778 40 H 0.090 0.910 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 17.099 -9.511 -10.819 22.358 hybrid contribution 0.059 0.291 0.370 0.475 sum 17.158 -9.220 -10.448 22.103 Atomic orbital electron populations 1.69839 1.05717 1.26553 1.52986 1.25245 0.95208 0.97587 0.99454 0.86972 0.80018 0.84691 0.77126 1.21572 1.23143 1.19536 1.18855 0.84876 0.94662 1.40124 0.89789 1.44201 1.08495 1.32949 1.46309 1.21339 0.97289 0.91937 0.89155 1.22312 0.97788 0.98187 0.99458 1.20983 0.94064 0.92784 0.86510 0.89040 1.46048 1.33522 1.22348 1.34283 1.18021 0.79799 0.85283 0.82138 1.90788 1.64606 1.20249 1.66919 1.21917 1.00416 0.98025 0.98831 1.24021 0.93895 0.98381 0.93798 1.21470 0.98992 0.95983 0.97869 1.22457 0.97118 0.99624 0.96859 1.21287 1.01446 0.93886 0.96317 1.22578 0.89447 0.92645 0.93305 0.93222 1.86446 1.53865 1.54630 1.40922 1.21577 0.93439 0.92579 0.93015 0.92780 0.90655 0.95577 0.92559 0.90541 0.76229 0.84530 0.90325 0.89787 0.90747 0.90589 0.90260 0.90595 0.77751 0.91049 0.95006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.01 13.97 55.49 0.78 -27.24 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.90 24.34 -169.99 -4.14 18.76 16 4 H -0.29 -7.34 6.62 56.52 0.37 -6.96 16 5 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.27 -6.91 6.64 56.52 0.38 -6.53 16 7 C -0.26 -7.13 10.04 -15.06 -0.15 -7.28 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 N -0.60 -14.09 2.71 -172.31 -0.47 -14.56 16 10 C 0.13 2.96 4.21 -3.71 -0.02 2.94 16 11 C -0.14 -2.73 5.51 -26.61 -0.15 -2.88 16 12 C 0.16 2.75 2.20 -67.89 -0.15 2.60 16 13 H 0.09 1.67 7.58 -51.93 -0.39 1.27 16 14 N -0.71 -10.42 5.04 -54.95 -0.28 -10.69 16 15 C 0.56 8.66 7.76 -12.66 -0.10 8.56 16 16 O -0.55 -10.49 16.43 5.27 0.09 -10.40 16 17 C -0.19 -2.23 6.09 -102.72 -0.63 -2.85 16 18 C -0.08 -0.84 10.43 -36.01 -0.38 -1.22 16 19 C -0.11 -0.76 6.80 -26.85 -0.18 -0.95 16 20 C -0.12 -0.86 7.17 -24.99 -0.18 -1.04 16 21 C -0.09 -0.80 6.04 -26.76 -0.16 -0.96 16 22 C 0.08 1.28 3.38 -26.61 -0.09 1.19 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 O -0.55 -8.72 12.09 -35.23 -0.43 -9.14 16 25 C 0.12 2.27 6.16 -3.71 -0.02 2.25 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.08 1.90 4.50 -51.93 -0.23 1.67 16 28 H 0.03 0.60 7.07 -51.93 -0.37 0.24 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.61 7.61 -51.93 -0.40 1.22 16 31 H 0.40 5.08 7.25 -40.82 -0.30 4.78 16 32 H 0.14 1.46 8.03 -52.48 -0.42 1.04 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.66 7.82 -51.93 -0.41 0.25 16 39 H 0.38 4.70 9.08 45.56 0.41 5.11 16 40 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -33.80 324.33 -7.35 -41.15 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.50 Total: 6.26 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -2.29 Total: 0.96 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.03 Total: -52.49 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.34 Total: -19.54 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.14 Total: 18.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.80 -7.35 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090172747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.299 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds