Wall clock time and date at job start Tue Mar 31 2020 02:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 120.00209 * 2 1 4 4 H 1.48496 * 109.47417 * 272.90123 * 3 2 1 5 5 H 1.48494 * 109.47176 * 32.90502 * 3 2 1 6 6 H 1.48506 * 109.47195 * 152.90381 * 3 2 1 7 7 C 1.38813 * 119.99377 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00674 * 339.36051 * 7 2 1 9 9 N 1.36944 * 119.99656 * 159.36155 * 7 2 1 10 10 C 1.46933 * 120.62822 * 332.60153 * 9 7 2 11 11 C 1.53195 * 108.77171 * 233.63408 * 10 9 7 12 12 C 1.53045 * 109.31158 * 305.36214 * 11 10 9 13 13 H 1.08995 * 109.45928 * 301.34887 * 12 11 10 14 14 N 1.46503 * 109.45825 * 181.38774 * 12 11 10 15 15 C 1.34783 * 119.99492 * 84.93493 * 14 12 11 16 16 O 1.21611 * 120.00371 * 359.97438 * 15 14 12 17 17 C 1.47102 * 119.99636 * 180.02562 * 15 14 12 18 18 C 1.32611 * 124.62171 * 180.02562 * 17 15 14 19 19 C 1.51109 * 110.76008 * 179.97438 * 18 17 15 20 20 C 1.54577 * 104.83831 * 16.60033 * 19 18 17 21 21 C 1.51121 * 124.61979 * 359.72288 * 17 15 14 22 22 C 1.53034 * 109.53611 * 61.37258 * 12 11 10 23 23 H 1.09005 * 109.50177 * 178.65238 * 22 12 11 24 24 O 1.42896 * 109.50278 * 58.58227 * 22 12 11 25 25 C 1.46927 * 120.63281 * 152.62886 * 9 7 2 26 26 H 0.97001 * 119.99728 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.58422 * 353.41713 * 10 9 7 28 28 H 1.08992 * 109.58358 * 113.70291 * 10 9 7 29 29 H 1.09000 * 109.49282 * 185.41372 * 11 10 9 30 30 H 1.08999 * 109.49965 * 65.31857 * 11 10 9 31 31 H 0.96991 * 120.00222 * 264.93296 * 14 12 11 32 32 H 1.08005 * 124.61799 * 359.97438 * 18 17 15 33 33 H 1.09002 * 110.36342 * 135.43465 * 19 18 17 34 34 H 1.08998 * 110.36902 * 257.75467 * 19 18 17 35 35 H 1.08993 * 110.99052 * 93.07498 * 20 19 18 36 36 H 1.09007 * 110.97819 * 216.83642 * 20 19 18 37 37 H 1.08992 * 110.36313 * 282.24255 * 21 17 15 38 38 H 1.08996 * 110.36250 * 44.56241 * 21 17 15 39 39 H 0.96701 * 114.00612 * 179.97438 * 24 22 12 40 40 H 1.09002 * 109.58235 * 6.57599 * 25 9 7 41 41 H 1.09002 * 109.58260 * 246.15743 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4364 2.0818 -1.3982 5 1 1.4798 2.6340 0.7606 6 1 3.5772 1.4231 0.6377 7 6 2.0101 -1.2022 0.0005 8 1 1.5221 -2.1074 0.3306 9 7 3.3136 -1.2405 -0.4175 10 6 3.8174 -0.2598 -1.3887 11 6 4.4616 -1.0105 -2.5585 12 6 5.5282 -1.9670 -2.0201 13 1 6.2777 -1.4009 -1.4671 14 7 6.1694 -2.6626 -3.1388 15 6 7.1984 -2.0854 -3.7903 16 8 7.5944 -0.9871 -3.4498 17 6 7.8419 -2.7835 -4.9139 18 6 8.8583 -2.3027 -5.6169 19 6 9.2726 -3.2773 -6.6948 20 6 8.0820 -4.2548 -6.8235 21 6 7.4390 -4.1492 -5.4201 22 6 4.8743 -2.9916 -1.0902 23 1 5.6305 -3.6871 -0.7260 24 8 3.8689 -3.7120 -1.8058 25 6 4.2348 -2.2634 0.0962 26 1 -0.4850 0.8401 0.0004 27 1 2.9909 0.3486 -1.7558 28 1 4.5583 0.3806 -0.9104 29 1 4.9241 -0.2956 -3.2389 30 1 3.6986 -1.5787 -3.0905 31 1 5.8533 -3.5384 -3.4105 32 1 9.3262 -1.3449 -5.4428 33 1 9.4371 -2.7539 -7.6366 34 1 10.1731 -3.8136 -6.3956 35 1 7.3903 -3.9274 -7.5996 36 1 8.4295 -5.2699 -7.0161 37 1 7.8275 -4.9271 -4.7629 38 1 6.3539 -4.2212 -5.4944 39 1 3.4121 -4.3803 -1.2768 40 1 3.6837 -2.9768 0.7089 41 1 5.0116 -1.7879 0.6950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090172747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:40 Heat of formation + Delta-G solvation = -72.734517 kcal Electronic energy + Delta-G solvation = -22609.679551 eV Core-core repulsion = 19296.169815 eV Total energy + Delta-G solvation = -3313.509736 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32575 -39.89982 -38.52674 -36.75876 -35.73911 -33.96266 -32.08841 -31.03003 -30.11881 -29.18158 -26.87232 -24.39533 -24.15961 -22.74576 -21.57871 -21.32354 -19.71591 -18.97630 -18.12712 -17.72386 -17.56858 -16.79492 -16.48476 -15.96411 -15.81317 -15.71851 -15.69569 -14.99754 -14.70767 -14.02406 -13.94163 -13.83672 -13.62494 -13.52356 -13.15220 -12.93105 -12.79939 -12.59024 -12.46870 -12.18594 -12.05826 -11.98139 -11.90828 -11.76074 -11.45324 -11.11288 -10.99994 -10.60447 -10.16185 -9.81764 -8.93450 -8.17758 -5.47966 0.37624 1.28106 1.37707 1.45908 2.15313 2.26755 2.39860 2.99472 3.26399 3.39190 3.55409 3.65891 3.74713 3.90804 4.10197 4.15987 4.20652 4.22659 4.32156 4.39688 4.58674 4.68450 4.75939 4.82503 4.82944 4.86242 4.91298 4.93856 4.97548 4.98724 5.18848 5.31116 5.35565 5.38937 5.47573 5.54755 5.84552 6.11788 6.57260 6.84303 6.98683 7.20960 7.59587 8.00800 9.01866 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.004268 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.248982 B = 6558.519515 C = 6962.963496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.033 4.033 3 Si 0.935 3.065 4 H -0.285 1.285 5 H -0.309 1.309 6 H -0.263 1.263 7 C -0.237 4.237 8 H 0.063 0.937 9 N -0.608 5.608 10 C 0.127 3.873 11 C -0.125 4.125 12 C 0.164 3.836 13 H 0.083 0.917 14 N -0.701 5.701 15 C 0.555 3.445 16 O -0.592 6.592 17 C -0.215 4.215 18 C -0.072 4.072 19 C -0.102 4.102 20 C -0.119 4.119 21 C -0.088 4.088 22 C 0.097 3.903 23 H 0.092 0.908 24 O -0.566 6.566 25 C 0.112 3.888 26 H 0.260 0.740 27 H 0.048 0.952 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.415 0.585 32 H 0.126 0.874 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.391 0.609 40 H 0.081 0.919 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.351 -12.721 -11.776 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.227 4.227 3 Si 0.766 3.234 4 H -0.213 1.213 5 H -0.237 1.237 6 H -0.187 1.187 7 C -0.366 4.366 8 H 0.081 0.919 9 N -0.332 5.332 10 C 0.001 3.999 11 C -0.165 4.165 12 C 0.058 3.942 13 H 0.101 0.899 14 N -0.351 5.351 15 C 0.345 3.655 16 O -0.475 6.475 17 C -0.218 4.218 18 C -0.091 4.091 19 C -0.139 4.139 20 C -0.156 4.156 21 C -0.125 4.125 22 C 0.036 3.964 23 H 0.109 0.891 24 O -0.373 6.373 25 C -0.014 4.014 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.252 0.748 32 H 0.144 0.856 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.241 0.759 40 H 0.099 0.901 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.671 -11.526 -11.977 25.753 hybrid contribution -0.662 0.834 0.698 1.273 sum 19.009 -10.692 -11.279 24.553 Atomic orbital electron populations 1.69946 1.07127 1.26985 1.56032 1.25792 0.95731 1.00461 1.00762 0.86082 0.78959 0.81349 0.77059 1.21289 1.23748 1.18703 1.18881 0.86497 0.93600 1.37667 0.91888 1.44302 1.07966 1.34144 1.46831 1.21274 0.96434 0.92093 0.90105 1.22107 0.98109 0.98323 0.97972 1.20782 0.93117 0.92910 0.87350 0.89893 1.45854 1.33122 1.22552 1.33539 1.18645 0.79472 0.84829 0.82551 1.90759 1.65968 1.22351 1.68409 1.21925 1.01472 0.99866 0.98494 1.24360 0.92653 0.98321 0.93813 1.21546 0.99752 0.95395 0.97175 1.22491 0.96737 1.00781 0.95614 1.21322 1.01550 0.92137 0.97520 1.22397 0.89981 0.92633 0.91398 0.89066 1.86415 1.54203 1.55134 1.41585 1.21896 0.93045 0.91761 0.94654 0.93064 0.93360 0.95389 0.93036 0.91850 0.74786 0.85612 0.88877 0.87915 0.90745 0.88376 0.89008 0.90805 0.75935 0.90102 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.47 13.97 21.65 0.30 -60.17 16 2 C -0.03 -1.93 5.23 84.86 0.44 -1.49 16 3 Si 0.94 48.25 24.34 68.60 1.67 49.92 16 4 H -0.29 -14.42 6.62 99.48 0.66 -13.76 16 5 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 6 H -0.26 -13.01 6.64 99.48 0.66 -12.35 16 7 C -0.24 -13.24 10.04 84.03 0.84 -12.40 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 9 N -0.61 -28.34 2.71 -699.07 -1.89 -30.23 16 10 C 0.13 5.79 4.21 86.36 0.36 6.16 16 11 C -0.12 -4.92 5.51 30.67 0.17 -4.75 16 12 C 0.16 5.32 2.20 45.02 0.10 5.42 16 13 H 0.08 2.90 7.58 -2.39 -0.02 2.88 16 14 N -0.70 -19.27 5.04 -446.00 -2.25 -21.52 16 15 C 0.55 16.61 7.76 86.57 0.67 17.28 16 16 O -0.59 -22.72 16.43 -4.07 -0.07 -22.79 16 17 C -0.21 -4.68 6.09 -18.56 -0.11 -4.80 16 18 C -0.07 -1.35 10.43 24.66 0.26 -1.09 16 19 C -0.10 -1.11 6.80 30.51 0.21 -0.91 16 20 C -0.12 -1.22 7.17 31.72 0.23 -0.99 16 21 C -0.09 -1.27 6.04 30.57 0.18 -1.09 16 22 C 0.10 2.76 3.38 30.67 0.10 2.87 16 23 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 24 O -0.57 -16.37 12.09 -148.98 -1.80 -18.17 16 25 C 0.11 3.95 6.16 86.36 0.53 4.49 16 26 H 0.26 15.79 8.31 -92.71 -0.77 15.01 16 27 H 0.05 2.46 4.50 -2.39 -0.01 2.45 16 28 H 0.03 1.27 7.07 -2.39 -0.02 1.26 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 2.65 7.61 -2.39 -0.02 2.63 16 31 H 0.41 9.44 7.25 -92.71 -0.67 8.77 16 32 H 0.13 2.60 8.03 -2.91 -0.02 2.57 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 0.61 8.14 -2.38 -0.02 0.60 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.08 7.82 -2.39 -0.02 1.07 16 39 H 0.39 8.70 9.08 -74.06 -0.67 8.03 16 40 H 0.08 2.69 7.93 -2.39 -0.02 2.67 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -74.74 324.33 -0.44 -75.19 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.39 Total: 19.07 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 3.99 Total: 8.70 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -3.84 Total: -111.92 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -1.87 Total: -40.96 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.67 Total: 49.92 kcal Total: -74.74 -0.44 -75.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090172747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.453 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds