Wall clock time and date at job start Tue Mar 31 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99812 * 2 1 4 4 H 1.48491 * 109.47171 * 239.99823 * 3 2 1 5 5 H 1.48504 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99450 * 3 2 1 7 7 C 1.38804 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99711 * 162.76883 * 7 2 1 9 9 N 1.36939 * 120.00453 * 343.04343 * 7 2 1 10 10 C 1.46923 * 120.63131 * 151.77067 * 9 7 2 11 11 C 1.53626 * 108.54225 * 126.36996 * 10 9 7 12 12 C 1.53043 * 109.24075 * 54.85598 * 11 10 9 13 13 H 1.08998 * 109.44810 * 58.52572 * 12 11 10 14 14 N 1.46497 * 109.45895 * 178.49172 * 12 11 10 15 15 C 1.34777 * 119.99819 * 275.06860 * 14 12 11 16 16 O 1.21615 * 120.00093 * 359.97438 * 15 14 12 17 17 C 1.47107 * 119.99843 * 180.02562 * 15 14 12 18 18 C 1.32620 * 124.61781 * 180.02562 * 17 15 14 19 19 C 1.51108 * 110.75826 * 179.97438 * 18 17 15 20 20 C 1.54580 * 104.83962 * 16.59625 * 19 18 17 21 21 C 1.51107 * 124.62117 * 359.71924 * 17 15 14 22 22 C 1.53038 * 109.53618 * 298.51026 * 12 11 10 23 23 H 1.09003 * 109.50150 * 301.40963 * 22 12 11 24 24 O 1.42908 * 109.49644 * 181.31571 * 22 12 11 25 25 C 1.46930 * 120.62706 * 332.05007 * 9 7 2 26 26 H 0.96999 * 120.00551 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.58490 * 246.19911 * 10 9 7 28 28 H 1.09001 * 109.58884 * 6.62844 * 10 9 7 29 29 H 1.09005 * 109.63447 * 294.86690 * 11 10 9 30 30 H 1.08996 * 109.45926 * 174.73824 * 11 10 9 31 31 H 0.96995 * 120.00323 * 95.06649 * 14 12 11 32 32 H 1.07995 * 124.62299 * 0.02562 * 18 17 15 33 33 H 1.08991 * 110.37067 * 135.43791 * 19 18 17 34 34 H 1.09008 * 110.36669 * 257.65389 * 19 18 17 35 35 H 1.09008 * 110.98120 * 93.07555 * 20 19 18 36 36 H 1.08997 * 110.98955 * 216.83285 * 20 19 18 37 37 H 1.08998 * 110.36927 * 282.24182 * 21 17 15 38 38 H 1.09007 * 110.36428 * 44.56313 * 21 17 15 39 39 H 0.96702 * 113.99863 * 180.15798 * 24 22 12 40 40 H 1.08996 * 109.58824 * 353.37379 * 25 9 7 41 41 H 1.09000 * 109.58168 * 113.79980 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2231 -0.2765 9 7 1.3703 -2.3621 0.3469 10 6 1.8131 -3.6528 -0.1979 11 6 2.0681 -4.6152 0.9720 12 6 0.8105 -4.6981 1.8402 13 1 -0.0277 -5.0402 1.2332 14 7 1.0362 -5.6424 2.9373 15 6 0.8345 -6.9609 2.7437 16 8 0.4648 -7.3666 1.6584 17 6 1.0606 -7.9091 3.8454 18 6 0.8914 -9.2214 3.7566 19 6 1.2120 -9.8929 5.0718 20 6 1.1997 -8.7505 6.1130 21 6 1.5234 -7.5212 5.2306 22 6 0.4932 -3.3156 2.4147 23 1 1.3411 -2.9620 3.0015 24 8 -0.6634 -3.4000 3.2498 25 6 0.2239 -2.3390 1.2657 26 1 -0.4851 0.8400 -0.0004 27 1 1.0386 -4.0602 -0.8476 28 1 2.7332 -3.5135 -0.7655 29 1 2.9012 -4.2494 1.5724 30 1 2.3072 -5.6048 0.5826 31 1 1.3307 -5.3188 3.8029 32 1 0.5694 -9.7397 2.8656 33 1 0.4514 -10.6351 5.3141 34 1 2.1963 -10.3593 5.0297 35 1 0.2176 -8.6553 6.5765 36 1 1.9719 -8.9013 6.8673 37 1 2.5953 -7.3232 5.2308 38 1 0.9753 -6.6473 5.5829 39 1 -0.9243 -2.5577 3.6468 40 1 0.0951 -1.3326 1.6640 41 1 -0.6775 -2.6415 0.7327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090172749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:47 Heat of formation + Delta-G solvation = -55.606407 kcal Electronic energy + Delta-G solvation = -22416.199812 eV Core-core repulsion = 19103.432806 eV Total energy + Delta-G solvation = -3312.767006 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99763 -38.41550 -37.31961 -35.25292 -34.30138 -32.17091 -30.02974 -29.15060 -28.85633 -28.26040 -25.16980 -22.85732 -22.09639 -21.50112 -20.62700 -19.67278 -18.49017 -17.29866 -16.75407 -16.57156 -16.02050 -15.62652 -14.92073 -14.58780 -14.36638 -13.81766 -13.61324 -13.31751 -13.05925 -12.89725 -12.59215 -12.23525 -12.13708 -11.93720 -11.81159 -11.66994 -11.46339 -11.37999 -11.19772 -10.81614 -10.78524 -10.40721 -10.21785 -10.01535 -9.84925 -9.51820 -9.33258 -9.07943 -8.68435 -8.51189 -6.77806 -5.86975 -3.30905 1.39071 3.33424 3.39760 3.40587 3.45667 3.49067 4.33331 4.39492 4.41865 4.61503 4.75589 4.95016 5.11703 5.29496 5.39544 5.42584 5.46022 5.48585 5.58348 5.60168 5.62510 5.73148 5.92651 5.93319 6.01474 6.10095 6.21554 6.25114 6.43246 6.46352 6.51448 6.71504 6.88882 6.92421 7.12580 7.46004 7.71495 7.82006 8.10637 8.36202 8.49514 9.11298 9.74037 10.30618 11.21330 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.003764 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.614271 B = 7436.355681 C = 7634.074398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.161 3.839 13 H 0.088 0.912 14 N -0.709 5.709 15 C 0.561 3.439 16 O -0.547 6.547 17 C -0.186 4.186 18 C -0.084 4.084 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.093 4.093 22 C 0.072 3.928 23 H 0.051 0.949 24 O -0.573 6.573 25 C 0.149 3.851 26 H 0.256 0.744 27 H 0.024 0.976 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.375 0.625 40 H 0.094 0.906 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 -14.079 12.655 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.057 3.943 13 H 0.106 0.894 14 N -0.357 5.357 15 C 0.349 3.651 16 O -0.427 6.427 17 C -0.189 4.189 18 C -0.104 4.104 19 C -0.143 4.143 20 C -0.160 4.160 21 C -0.130 4.130 22 C 0.011 3.989 23 H 0.069 0.931 24 O -0.377 6.377 25 C 0.022 3.978 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.155 0.845 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.222 0.778 40 H 0.112 0.888 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.569 -14.808 11.686 19.038 hybrid contribution 0.509 1.682 0.494 1.826 sum 3.078 -13.126 12.181 18.170 Atomic orbital electron populations 1.70017 1.05267 1.25816 1.53522 1.25088 0.95320 0.98558 1.00627 0.86336 0.78901 0.83127 0.78209 1.20772 1.21583 1.20983 1.19179 0.92764 0.84622 1.42088 0.91384 1.44018 1.35548 1.01953 1.49784 1.21033 0.98239 0.86305 0.92625 1.22488 0.96615 1.00200 0.98619 1.20998 0.98673 0.86965 0.87630 0.89439 1.46003 1.68069 1.06211 1.15441 1.17963 0.77417 0.82387 0.87360 1.90780 1.47224 1.78520 1.26134 1.21940 1.05767 0.95178 0.96050 1.24000 0.93435 0.94435 0.98521 1.21459 1.02221 0.98336 0.92242 1.22454 1.02253 0.94109 0.97210 1.21291 1.01371 0.99062 0.91246 1.22977 0.86981 0.95493 0.93409 0.93076 1.86423 1.48163 1.36656 1.66492 1.21414 0.89783 0.98130 0.88522 0.93422 0.95776 0.92087 0.92026 0.91859 0.76942 0.84545 0.90409 0.89836 0.90803 0.90641 0.90256 0.90658 0.77787 0.88808 0.95239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 11.18 55.49 0.62 -24.93 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.89 9.58 -15.06 -0.14 -7.04 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -14.53 2.99 -172.06 -0.51 -15.05 16 10 C 0.14 3.10 6.54 -3.49 -0.02 3.08 16 11 C -0.14 -2.58 5.67 -26.38 -0.15 -2.73 16 12 C 0.16 3.01 2.11 -67.89 -0.14 2.87 16 13 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 14 N -0.71 -11.25 4.91 -54.95 -0.27 -11.52 16 15 C 0.56 9.30 7.76 -12.66 -0.10 9.20 16 16 O -0.55 -11.12 16.43 5.26 0.09 -11.03 16 17 C -0.19 -2.35 6.09 -102.73 -0.63 -2.98 16 18 C -0.08 -0.93 10.43 -36.01 -0.38 -1.31 16 19 C -0.11 -0.82 6.80 -26.85 -0.18 -1.00 16 20 C -0.12 -0.91 7.17 -24.98 -0.18 -1.09 16 21 C -0.09 -0.86 6.04 -26.76 -0.16 -1.03 16 22 C 0.07 1.37 3.14 -26.62 -0.08 1.28 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 O -0.57 -9.93 13.16 -35.23 -0.46 -10.40 16 25 C 0.15 3.46 4.93 -3.71 -0.02 3.44 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.26 7.93 -51.93 -0.41 0.84 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.40 5.35 7.60 -40.82 -0.31 5.04 16 32 H 0.14 1.55 8.03 -52.49 -0.42 1.13 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 39 H 0.38 5.19 9.08 45.56 0.41 5.60 16 40 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -31.87 332.47 -8.45 -40.32 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.62 Total: 8.80 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.27 Total: 2.71 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.16 Total: -51.49 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.38 Total: -21.43 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.87 -8.45 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090172749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.286 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds