Wall clock time and date at job start Tue Mar 31 2020 02:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99812 * 2 1 4 4 H 1.48491 * 109.47171 * 239.99823 * 3 2 1 5 5 H 1.48504 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99450 * 3 2 1 7 7 C 1.38804 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99711 * 162.76883 * 7 2 1 9 9 N 1.36939 * 120.00453 * 343.04343 * 7 2 1 10 10 C 1.46923 * 120.63131 * 151.77067 * 9 7 2 11 11 C 1.53626 * 108.54225 * 126.36996 * 10 9 7 12 12 C 1.53043 * 109.24075 * 54.85598 * 11 10 9 13 13 H 1.08998 * 109.44810 * 58.52572 * 12 11 10 14 14 N 1.46497 * 109.45895 * 178.49172 * 12 11 10 15 15 C 1.34777 * 119.99819 * 275.06860 * 14 12 11 16 16 O 1.21615 * 120.00093 * 359.97438 * 15 14 12 17 17 C 1.47107 * 119.99843 * 180.02562 * 15 14 12 18 18 C 1.32620 * 124.61781 * 180.02562 * 17 15 14 19 19 C 1.51108 * 110.75826 * 179.97438 * 18 17 15 20 20 C 1.54580 * 104.83962 * 16.59625 * 19 18 17 21 21 C 1.51107 * 124.62117 * 359.71924 * 17 15 14 22 22 C 1.53038 * 109.53618 * 298.51026 * 12 11 10 23 23 H 1.09003 * 109.50150 * 301.40963 * 22 12 11 24 24 O 1.42908 * 109.49644 * 181.31571 * 22 12 11 25 25 C 1.46930 * 120.62706 * 332.05007 * 9 7 2 26 26 H 0.96999 * 120.00551 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.58490 * 246.19911 * 10 9 7 28 28 H 1.09001 * 109.58884 * 6.62844 * 10 9 7 29 29 H 1.09005 * 109.63447 * 294.86690 * 11 10 9 30 30 H 1.08996 * 109.45926 * 174.73824 * 11 10 9 31 31 H 0.96995 * 120.00323 * 95.06649 * 14 12 11 32 32 H 1.07995 * 124.62299 * 0.02562 * 18 17 15 33 33 H 1.08991 * 110.37067 * 135.43791 * 19 18 17 34 34 H 1.09008 * 110.36669 * 257.65389 * 19 18 17 35 35 H 1.09008 * 110.98120 * 93.07555 * 20 19 18 36 36 H 1.08997 * 110.98955 * 216.83285 * 20 19 18 37 37 H 1.08998 * 110.36927 * 282.24182 * 21 17 15 38 38 H 1.09007 * 110.36428 * 44.56313 * 21 17 15 39 39 H 0.96702 * 113.99863 * 180.15798 * 24 22 12 40 40 H 1.08996 * 109.58824 * 353.37379 * 25 9 7 41 41 H 1.09000 * 109.58168 * 113.79980 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2231 -0.2765 9 7 1.3703 -2.3621 0.3469 10 6 1.8131 -3.6528 -0.1979 11 6 2.0681 -4.6152 0.9720 12 6 0.8105 -4.6981 1.8402 13 1 -0.0277 -5.0402 1.2332 14 7 1.0362 -5.6424 2.9373 15 6 0.8345 -6.9609 2.7437 16 8 0.4648 -7.3666 1.6584 17 6 1.0606 -7.9091 3.8454 18 6 0.8914 -9.2214 3.7566 19 6 1.2120 -9.8929 5.0718 20 6 1.1997 -8.7505 6.1130 21 6 1.5234 -7.5212 5.2306 22 6 0.4932 -3.3156 2.4147 23 1 1.3411 -2.9620 3.0015 24 8 -0.6634 -3.4000 3.2498 25 6 0.2239 -2.3390 1.2657 26 1 -0.4851 0.8400 -0.0004 27 1 1.0386 -4.0602 -0.8476 28 1 2.7332 -3.5135 -0.7655 29 1 2.9012 -4.2494 1.5724 30 1 2.3072 -5.6048 0.5826 31 1 1.3307 -5.3188 3.8029 32 1 0.5694 -9.7397 2.8656 33 1 0.4514 -10.6351 5.3141 34 1 2.1963 -10.3593 5.0297 35 1 0.2176 -8.6553 6.5765 36 1 1.9719 -8.9013 6.8673 37 1 2.5953 -7.3232 5.2308 38 1 0.9753 -6.6473 5.5829 39 1 -0.9243 -2.5577 3.6468 40 1 0.0951 -1.3326 1.6640 41 1 -0.6775 -2.6415 0.7327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090172749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:46 Heat of formation + Delta-G solvation = -78.782301 kcal Electronic energy + Delta-G solvation = -22417.204794 eV Core-core repulsion = 19103.432806 eV Total energy + Delta-G solvation = -3313.771988 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27244 -39.73681 -38.47739 -36.91299 -35.84935 -33.97698 -31.54714 -30.61004 -30.05872 -29.15135 -26.98881 -24.45177 -23.69152 -22.72579 -21.52748 -21.29543 -19.77231 -18.79705 -18.13994 -18.06912 -17.40640 -16.74479 -16.43273 -15.98834 -15.69728 -15.59184 -15.17764 -15.03597 -14.47771 -13.89566 -13.78941 -13.60699 -13.54569 -13.38246 -13.07106 -12.91534 -12.62519 -12.58840 -12.57111 -12.13972 -12.06540 -12.03484 -11.96843 -11.90385 -11.43272 -11.05841 -10.87770 -10.60923 -10.16364 -9.80600 -8.78283 -7.91701 -5.39781 0.39508 1.49419 1.50445 1.58150 2.18065 2.28393 2.49175 3.08708 3.25503 3.55031 3.60848 3.66944 3.87884 4.02609 4.12432 4.23747 4.28060 4.33172 4.38035 4.42286 4.66127 4.78626 4.83388 4.86932 4.89977 4.94288 4.99859 5.00968 5.12957 5.19893 5.29362 5.36769 5.40214 5.47599 5.53592 5.56061 5.62345 6.31730 6.57489 6.80482 7.08411 7.22970 7.75454 8.29173 9.14867 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.003764 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.614271 B = 7436.355681 C = 7634.074398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.270 4.270 8 H 0.074 0.926 9 N -0.604 5.604 10 C 0.142 3.858 11 C -0.122 4.122 12 C 0.168 3.832 13 H 0.052 0.948 14 N -0.698 5.698 15 C 0.555 3.445 16 O -0.595 6.595 17 C -0.214 4.214 18 C -0.072 4.072 19 C -0.101 4.101 20 C -0.117 4.117 21 C -0.089 4.089 22 C 0.093 3.907 23 H 0.067 0.933 24 O -0.574 6.574 25 C 0.157 3.843 26 H 0.252 0.748 27 H 0.008 0.992 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.411 0.589 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.392 0.608 40 H 0.073 0.927 41 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 -14.981 15.140 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.800 3.200 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.400 4.400 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.162 4.162 12 C 0.063 3.937 13 H 0.071 0.929 14 N -0.347 5.347 15 C 0.345 3.655 16 O -0.478 6.478 17 C -0.217 4.217 18 C -0.092 4.092 19 C -0.138 4.138 20 C -0.155 4.155 21 C -0.126 4.126 22 C 0.032 3.968 23 H 0.085 0.915 24 O -0.381 6.381 25 C 0.030 3.970 26 H 0.061 0.939 27 H 0.026 0.974 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.248 0.752 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.242 0.758 40 H 0.091 0.909 41 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 4.271 -15.718 14.219 21.622 hybrid contribution -0.080 1.875 -0.346 1.909 sum 4.191 -13.843 13.873 20.042 Atomic orbital electron populations 1.70183 1.06765 1.26230 1.54868 1.25868 0.96040 1.01698 1.00684 0.85275 0.77497 0.78750 0.78498 1.20297 1.22117 1.19857 1.19545 0.93193 0.85538 1.41677 0.90880 1.44264 1.35573 1.02528 1.50504 1.21124 0.97889 0.85709 0.93714 1.22273 0.96892 0.99491 0.97545 1.20678 0.97519 0.87344 0.88199 0.92939 1.45781 1.67872 1.05781 1.15259 1.18656 0.76194 0.82781 0.87827 1.90751 1.49475 1.79210 1.28375 1.21922 1.08310 0.94857 0.96567 1.24363 0.90810 0.94246 0.99804 1.21543 1.03629 0.98625 0.90006 1.22486 1.03257 0.92587 0.97129 1.21333 1.01890 1.00074 0.89298 1.22548 0.87925 0.94330 0.91971 0.91468 1.86402 1.47630 1.38079 1.65963 1.21221 0.88285 0.98065 0.89389 0.93867 0.97407 0.91308 0.90552 0.91392 0.75199 0.85684 0.88737 0.87991 0.90536 0.88361 0.89206 0.90621 0.75814 0.90889 0.98815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.20 11.18 21.65 0.24 -53.96 16 2 C -0.05 -2.57 4.92 84.86 0.42 -2.15 16 3 Si 0.97 43.41 29.59 68.60 2.03 45.44 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.27 -14.52 9.58 84.03 0.81 -13.71 16 8 H 0.07 3.79 7.89 -2.91 -0.02 3.76 16 9 N -0.60 -30.30 2.99 -698.27 -2.09 -32.39 16 10 C 0.14 6.17 6.54 86.51 0.57 6.74 16 11 C -0.12 -4.48 5.67 30.82 0.17 -4.31 16 12 C 0.17 6.31 2.11 45.02 0.10 6.40 16 13 H 0.05 2.36 7.58 -2.39 -0.02 2.34 16 14 N -0.70 -21.62 4.91 -446.01 -2.19 -23.81 16 15 C 0.56 18.32 7.76 86.57 0.67 18.99 16 16 O -0.60 -24.86 16.43 -4.08 -0.07 -24.93 16 17 C -0.21 -5.09 6.09 -18.57 -0.11 -5.20 16 18 C -0.07 -1.48 10.43 24.65 0.26 -1.22 16 19 C -0.10 -1.21 6.80 30.52 0.21 -1.00 16 20 C -0.12 -1.29 7.17 31.73 0.23 -1.07 16 21 C -0.09 -1.41 6.04 30.57 0.18 -1.22 16 22 C 0.09 3.51 3.14 30.67 0.10 3.60 16 23 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 24 O -0.57 -19.52 13.16 -148.98 -1.96 -21.48 16 25 C 0.16 7.54 4.93 86.36 0.43 7.97 16 26 H 0.25 14.17 8.31 -92.71 -0.77 13.39 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.07 2.84 7.93 -2.39 -0.02 2.82 16 29 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.41 10.33 7.60 -92.71 -0.70 9.62 16 32 H 0.13 2.79 8.03 -2.91 -0.02 2.77 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.18 7.82 -2.38 -0.02 1.16 16 39 H 0.39 10.45 9.08 -74.06 -0.67 9.77 16 40 H 0.07 3.79 6.04 -2.39 -0.01 3.78 16 41 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: -1.00 -70.64 332.47 -0.35 -70.99 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.34 Total: 26.32 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 4.02 Total: 13.82 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.03 Total: -110.15 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -2.03 Total: -46.41 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.64 -0.35 -70.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090172749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.789 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds