Wall clock time and date at job start Tue Mar 31 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00363 * 2 1 4 4 H 1.48492 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46859 * 299.99890 * 3 2 1 6 6 H 1.48501 * 109.47083 * 59.99841 * 3 2 1 7 7 C 1.38813 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00062 * 197.37065 * 7 2 1 9 9 N 1.36943 * 119.99898 * 17.37189 * 7 2 1 10 10 C 1.46927 * 120.62644 * 207.65730 * 9 7 2 11 11 C 1.53192 * 108.77418 * 233.62944 * 10 9 7 12 12 C 1.53039 * 109.31559 * 305.36931 * 11 10 9 13 13 H 1.08998 * 109.44882 * 181.38302 * 12 11 10 14 14 N 1.46499 * 109.45889 * 301.34623 * 12 11 10 15 15 C 1.34782 * 120.00066 * 275.06366 * 14 12 11 16 16 O 1.21609 * 119.99782 * 0.02562 * 15 14 12 17 17 C 1.47097 * 120.00090 * 180.02562 * 15 14 12 18 18 C 1.32996 * 119.99740 * 180.02562 * 17 15 14 19 19 C 1.51580 * 135.77955 * 180.02562 * 18 17 15 20 20 C 1.53845 * 86.85892 * 205.20061 * 19 18 17 21 21 C 1.51875 * 135.89458 * 0.07483 * 18 17 15 22 22 C 1.53036 * 109.53766 * 61.36546 * 12 11 10 23 23 H 1.09000 * 109.49846 * 58.61818 * 22 12 11 24 24 O 1.42895 * 109.49722 * 178.68584 * 22 12 11 25 25 C 1.46923 * 120.63104 * 27.68191 * 9 7 2 26 26 H 0.97003 * 120.00397 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.59256 * 353.42408 * 10 9 7 28 28 H 1.09008 * 109.58000 * 113.70523 * 10 9 7 29 29 H 1.09008 * 109.49544 * 185.41969 * 11 10 9 30 30 H 1.08996 * 109.49724 * 65.32596 * 11 10 9 31 31 H 0.97000 * 120.00429 * 95.06688 * 14 12 11 32 32 H 1.08005 * 120.00250 * 0.02562 * 17 15 14 33 33 H 1.08996 * 113.67292 * 90.68759 * 19 18 17 34 34 H 1.09003 * 113.66754 * 319.70607 * 19 18 17 35 35 H 1.08999 * 113.65309 * 89.64075 * 20 19 18 36 36 H 1.08993 * 113.65911 * 220.58868 * 20 19 18 37 37 H 1.08997 * 113.66778 * 40.33092 * 21 18 17 38 38 H 1.08999 * 113.74884 * 269.27235 * 21 18 17 39 39 H 0.96710 * 114.00308 * 179.97438 * 24 22 12 40 40 H 1.08999 * 109.58430 * 6.58455 * 25 9 7 41 41 H 1.08997 * 109.58821 * 246.15548 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7101 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0532 -1.2235 0.2798 9 7 1.3722 -2.3612 -0.3530 10 6 1.8194 -3.6548 0.1813 11 6 2.0751 -4.6097 -0.9889 12 6 0.8197 -4.6898 -1.8606 13 1 0.9909 -5.3877 -2.6802 14 7 -0.3081 -5.1560 -1.0502 15 6 -0.5062 -6.4766 -0.8672 16 8 0.2516 -7.2811 -1.3745 17 6 -1.6390 -6.9447 -0.0540 18 6 -1.8341 -8.2477 0.1269 19 6 -2.8443 -9.1026 0.8662 20 6 -1.7524 -10.1843 0.9344 21 6 -1.1429 -9.5257 -0.3153 22 6 0.5016 -3.3047 -2.4282 23 1 1.3501 -2.9468 -3.0114 24 8 -0.6528 -3.3864 -3.2664 25 6 0.2280 -2.3349 -1.2743 26 1 -0.4851 0.8400 0.0004 27 1 2.7399 -3.5173 0.7487 28 1 1.0479 -4.0680 0.8311 29 1 2.3145 -5.6011 -0.6039 30 1 2.9090 -4.2394 -1.5852 31 1 -0.9125 -4.5143 -0.6453 32 1 -2.3123 -6.2302 0.3962 33 1 -3.7043 -9.3867 0.2598 34 1 -3.1258 -8.7032 1.8405 35 1 -1.1203 -10.1124 1.8194 36 1 -2.1252 -11.1937 0.7607 37 1 -0.0548 -9.4654 -0.2916 38 1 -1.5247 -9.9294 -1.2530 39 1 -0.9130 -2.5427 -3.6610 40 1 0.0985 -1.3265 -1.6673 41 1 -0.6743 -2.6417 -0.7452 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090182486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:43 Heat of formation + Delta-G solvation = -24.939539 kcal Electronic energy + Delta-G solvation = -22540.018442 eV Core-core repulsion = 19228.581251 eV Total energy + Delta-G solvation = -3311.437191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.83709 -38.64126 -37.44594 -35.27206 -33.98461 -32.04114 -30.80883 -29.39582 -28.77901 -25.89297 -25.38184 -23.49633 -22.29201 -21.77864 -20.78253 -18.69399 -18.22910 -16.96413 -16.79798 -16.52138 -15.56665 -15.51676 -15.00697 -14.71482 -14.18123 -14.12710 -13.72266 -13.63970 -13.31865 -12.74176 -12.55939 -12.25204 -11.99938 -11.80806 -11.75295 -11.63879 -11.07226 -11.04196 -11.01028 -10.85542 -10.59185 -10.40770 -10.20276 -10.00107 -9.63272 -9.40107 -9.28141 -9.14686 -8.63031 -8.45507 -6.78987 -5.90139 -3.33044 1.50873 3.30436 3.39406 3.41554 3.57561 3.64769 4.38516 4.40424 4.45261 4.62963 4.69182 5.00853 5.24889 5.28809 5.41432 5.43972 5.49518 5.53304 5.63326 5.69643 5.74861 5.85414 5.94778 5.97620 6.05677 6.12395 6.24567 6.27979 6.47589 6.48545 6.65994 6.72749 6.83745 7.02852 7.07078 7.40919 7.70296 8.01938 8.10886 8.33618 8.67338 9.08688 9.71663 10.27490 11.18004 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029240 B = 0.003984 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.362368 B = 7026.776341 C = 7178.352774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.145 3.855 11 C -0.144 4.144 12 C 0.166 3.834 13 H 0.078 0.922 14 N -0.701 5.701 15 C 0.548 3.452 16 O -0.556 6.556 17 C -0.190 4.190 18 C -0.072 4.072 19 C -0.109 4.109 20 C -0.142 4.142 21 C -0.102 4.102 22 C 0.067 3.933 23 H 0.061 0.939 24 O -0.573 6.573 25 C 0.146 3.854 26 H 0.254 0.746 27 H 0.056 0.944 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.404 0.596 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.375 0.625 40 H 0.092 0.908 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.640 -13.476 -0.853 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.184 4.184 12 C 0.061 3.939 13 H 0.096 0.904 14 N -0.351 5.351 15 C 0.337 3.663 16 O -0.437 6.437 17 C -0.211 4.211 18 C -0.074 4.074 19 C -0.146 4.146 20 C -0.179 4.179 21 C -0.139 4.139 22 C 0.006 3.994 23 H 0.079 0.921 24 O -0.377 6.377 25 C 0.019 3.981 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.240 0.760 32 H 0.148 0.852 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.222 0.778 40 H 0.110 0.890 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.154 -14.499 -1.034 15.118 hybrid contribution 0.019 2.018 0.120 2.022 sum -4.134 -12.481 -0.914 13.180 Atomic orbital electron populations 1.70026 1.05257 1.25559 1.53851 1.25047 0.95320 0.98504 1.00731 0.86213 0.79444 0.83754 0.77320 1.20190 1.21528 1.21659 1.19259 0.92907 0.84670 1.41510 0.91364 1.43979 1.35692 1.01748 1.49828 1.20921 0.97882 0.86367 0.92914 1.22390 0.96542 1.00232 0.99223 1.20774 0.85970 0.94367 0.92772 0.90441 1.45890 1.30477 1.06655 1.52086 1.18348 0.84786 0.82490 0.80676 1.90714 1.47897 1.54342 1.50715 1.21742 1.00397 0.94828 1.04117 1.23547 0.96494 0.93339 0.93995 1.22372 0.96688 0.95249 1.00245 1.22832 0.98075 0.98027 0.99014 1.22320 1.01750 0.92248 0.97583 1.22938 0.87680 0.95907 0.92895 0.92126 1.86421 1.48273 1.36597 1.66417 1.21398 0.89479 0.98601 0.88591 0.93589 0.92553 0.96140 0.91751 0.91235 0.75967 0.85160 0.88392 0.90401 0.89881 0.90801 0.89477 0.88737 0.77806 0.88955 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 11.19 55.49 0.62 -24.26 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.69 9.59 -15.06 -0.14 -6.83 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -13.98 2.99 -172.31 -0.52 -14.50 16 10 C 0.15 3.01 6.25 -3.71 -0.02 2.98 16 11 C -0.14 -2.64 5.77 -26.61 -0.15 -2.79 16 12 C 0.17 3.06 2.47 -67.89 -0.17 2.89 16 13 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 14 N -0.70 -12.27 4.15 -54.95 -0.23 -12.50 16 15 C 0.55 9.51 7.73 -12.66 -0.10 9.42 16 16 O -0.56 -10.96 14.79 5.27 0.08 -10.88 16 17 C -0.19 -2.69 10.03 -37.81 -0.38 -3.07 16 18 C -0.07 -0.90 6.88 -100.21 -0.69 -1.59 16 19 C -0.11 -0.99 8.04 -27.01 -0.22 -1.21 16 20 C -0.14 -1.27 8.11 -25.91 -0.21 -1.48 16 21 C -0.10 -1.20 7.07 -26.86 -0.19 -1.39 16 22 C 0.07 1.25 3.36 -26.61 -0.09 1.16 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 O -0.57 -9.94 13.21 -35.23 -0.47 -10.40 16 25 C 0.15 3.23 4.64 -3.71 -0.02 3.21 16 26 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 28 H 0.02 0.43 7.75 -51.92 -0.40 0.03 16 29 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.40 7.02 6.85 -40.82 -0.28 6.74 16 32 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.18 7.50 -51.93 -0.39 0.79 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.38 5.20 9.08 45.56 0.41 5.61 16 40 H 0.09 2.27 6.03 -51.93 -0.31 1.96 16 41 H 0.02 0.57 6.64 -51.93 -0.34 0.22 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -30.42 330.84 -8.49 -38.92 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.47 Total: 11.45 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.46 Total: 1.29 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.12 Total: -51.25 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.39 Total: -21.28 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.42 -8.49 -38.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.979 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds