Wall clock time and date at job start Tue Mar 31 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00363 * 2 1 4 4 H 1.48492 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46859 * 299.99890 * 3 2 1 6 6 H 1.48501 * 109.47083 * 59.99841 * 3 2 1 7 7 C 1.38813 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00062 * 197.37065 * 7 2 1 9 9 N 1.36943 * 119.99898 * 17.37189 * 7 2 1 10 10 C 1.46927 * 120.62644 * 207.65730 * 9 7 2 11 11 C 1.53192 * 108.77418 * 233.62944 * 10 9 7 12 12 C 1.53039 * 109.31559 * 305.36931 * 11 10 9 13 13 H 1.08998 * 109.44882 * 181.38302 * 12 11 10 14 14 N 1.46499 * 109.45889 * 301.34623 * 12 11 10 15 15 C 1.34782 * 120.00066 * 275.06366 * 14 12 11 16 16 O 1.21609 * 119.99782 * 0.02562 * 15 14 12 17 17 C 1.47097 * 120.00090 * 180.02562 * 15 14 12 18 18 C 1.32996 * 119.99740 * 180.02562 * 17 15 14 19 19 C 1.51580 * 135.77955 * 180.02562 * 18 17 15 20 20 C 1.53845 * 86.85892 * 205.20061 * 19 18 17 21 21 C 1.51875 * 135.89458 * 0.07483 * 18 17 15 22 22 C 1.53036 * 109.53766 * 61.36546 * 12 11 10 23 23 H 1.09000 * 109.49846 * 58.61818 * 22 12 11 24 24 O 1.42895 * 109.49722 * 178.68584 * 22 12 11 25 25 C 1.46923 * 120.63104 * 27.68191 * 9 7 2 26 26 H 0.97003 * 120.00397 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.59256 * 353.42408 * 10 9 7 28 28 H 1.09008 * 109.58000 * 113.70523 * 10 9 7 29 29 H 1.09008 * 109.49544 * 185.41969 * 11 10 9 30 30 H 1.08996 * 109.49724 * 65.32596 * 11 10 9 31 31 H 0.97000 * 120.00429 * 95.06688 * 14 12 11 32 32 H 1.08005 * 120.00250 * 0.02562 * 17 15 14 33 33 H 1.08996 * 113.67292 * 90.68759 * 19 18 17 34 34 H 1.09003 * 113.66754 * 319.70607 * 19 18 17 35 35 H 1.08999 * 113.65309 * 89.64075 * 20 19 18 36 36 H 1.08993 * 113.65911 * 220.58868 * 20 19 18 37 37 H 1.08997 * 113.66778 * 40.33092 * 21 18 17 38 38 H 1.08999 * 113.74884 * 269.27235 * 21 18 17 39 39 H 0.96710 * 114.00308 * 179.97438 * 24 22 12 40 40 H 1.08999 * 109.58430 * 6.58455 * 25 9 7 41 41 H 1.08997 * 109.58821 * 246.15548 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7101 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0532 -1.2235 0.2798 9 7 1.3722 -2.3612 -0.3530 10 6 1.8194 -3.6548 0.1813 11 6 2.0751 -4.6097 -0.9889 12 6 0.8197 -4.6898 -1.8606 13 1 0.9909 -5.3877 -2.6802 14 7 -0.3081 -5.1560 -1.0502 15 6 -0.5062 -6.4766 -0.8672 16 8 0.2516 -7.2811 -1.3745 17 6 -1.6390 -6.9447 -0.0540 18 6 -1.8341 -8.2477 0.1269 19 6 -2.8443 -9.1026 0.8662 20 6 -1.7524 -10.1843 0.9344 21 6 -1.1429 -9.5257 -0.3153 22 6 0.5016 -3.3047 -2.4282 23 1 1.3501 -2.9468 -3.0114 24 8 -0.6528 -3.3864 -3.2664 25 6 0.2280 -2.3349 -1.2743 26 1 -0.4851 0.8400 0.0004 27 1 2.7399 -3.5173 0.7487 28 1 1.0479 -4.0680 0.8311 29 1 2.3145 -5.6011 -0.6039 30 1 2.9090 -4.2394 -1.5852 31 1 -0.9125 -4.5143 -0.6453 32 1 -2.3123 -6.2302 0.3962 33 1 -3.7043 -9.3867 0.2598 34 1 -3.1258 -8.7032 1.8405 35 1 -1.1203 -10.1124 1.8194 36 1 -2.1252 -11.1937 0.7607 37 1 -0.0548 -9.4654 -0.2916 38 1 -1.5247 -9.9294 -1.2530 39 1 -0.9130 -2.5427 -3.6610 40 1 0.0985 -1.3265 -1.6673 41 1 -0.6743 -2.6417 -0.7452 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090182486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:42 Heat of formation + Delta-G solvation = -45.711956 kcal Electronic energy + Delta-G solvation = -22540.919201 eV Core-core repulsion = 19228.581251 eV Total energy + Delta-G solvation = -3312.337950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22357 -39.79922 -38.74651 -36.86884 -35.61218 -33.73060 -32.13557 -30.96519 -30.35990 -27.23611 -26.69931 -24.68163 -23.85405 -23.43407 -22.00055 -20.27178 -19.38378 -18.69394 -18.11357 -18.00591 -16.84924 -16.79157 -16.41667 -16.04145 -15.79095 -15.52707 -15.33564 -15.05547 -14.90509 -14.36818 -13.86959 -13.55942 -13.32605 -13.27546 -12.88550 -12.85740 -12.69018 -12.67981 -12.58488 -12.13812 -11.98589 -11.86668 -11.82660 -11.49633 -11.25717 -10.96822 -10.64178 -10.59520 -10.24856 -9.85585 -8.72018 -7.90515 -5.36072 0.42136 1.46524 1.50221 1.59607 2.28357 2.36944 2.49710 3.13114 3.26394 3.46078 3.57731 3.65493 3.84732 3.93078 4.13121 4.24170 4.25697 4.30259 4.35369 4.45341 4.63486 4.70856 4.76409 4.84953 4.90629 4.93039 4.98889 5.06572 5.06812 5.15458 5.27957 5.31260 5.38188 5.57838 5.58958 5.65090 5.69090 6.34147 6.64971 6.82282 7.11586 7.31474 7.79120 8.31225 9.15382 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029240 B = 0.003984 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.362368 B = 7026.776341 C = 7178.352774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.294 1.294 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.602 5.602 10 C 0.147 3.853 11 C -0.130 4.130 12 C 0.168 3.832 13 H 0.072 0.928 14 N -0.701 5.701 15 C 0.544 3.456 16 O -0.586 6.586 17 C -0.218 4.218 18 C -0.069 4.069 19 C -0.097 4.097 20 C -0.130 4.130 21 C -0.115 4.115 22 C 0.084 3.916 23 H 0.062 0.938 24 O -0.574 6.574 25 C 0.158 3.842 26 H 0.252 0.748 27 H 0.056 0.944 28 H 0.017 0.983 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.404 0.596 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.391 0.609 40 H 0.066 0.934 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 -14.588 -0.623 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.239 4.239 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.221 1.221 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.327 5.327 10 C 0.022 3.978 11 C -0.170 4.170 12 C 0.063 3.937 13 H 0.090 0.910 14 N -0.351 5.351 15 C 0.335 3.665 16 O -0.469 6.469 17 C -0.238 4.238 18 C -0.071 4.071 19 C -0.134 4.134 20 C -0.167 4.167 21 C -0.152 4.152 22 C 0.023 3.977 23 H 0.080 0.920 24 O -0.380 6.380 25 C 0.032 3.968 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.241 0.759 32 H 0.164 0.836 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.240 0.760 40 H 0.084 0.916 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -4.734 -15.618 -0.809 16.340 hybrid contribution 0.183 2.272 0.053 2.279 sum -4.551 -13.346 -0.756 14.121 Atomic orbital electron populations 1.70151 1.06410 1.25932 1.54949 1.25713 0.96038 1.01200 1.00937 0.85254 0.78622 0.80021 0.76792 1.19393 1.21502 1.22070 1.19530 0.93109 0.85816 1.41159 0.91516 1.44178 1.35879 1.02136 1.50514 1.20957 0.97580 0.85577 0.93707 1.22235 0.96784 0.99699 0.98301 1.20680 0.86413 0.93826 0.92775 0.91032 1.45879 1.30217 1.06969 1.52024 1.18900 0.85244 0.81952 0.80418 1.90690 1.49230 1.54834 1.52156 1.21701 1.00409 0.96035 1.05681 1.24134 0.97205 0.93141 0.92591 1.22473 0.96527 0.93715 1.00675 1.22809 0.97478 0.99204 0.97242 1.22467 1.00352 0.92793 0.99550 1.22598 0.88127 0.95148 0.91804 0.92010 1.86400 1.47657 1.37972 1.66008 1.21201 0.88603 0.97890 0.89136 0.93928 0.92537 0.96532 0.91258 0.90654 0.75936 0.83554 0.86228 0.88984 0.89827 0.88363 0.92007 0.87971 0.75954 0.91571 0.97060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.75 11.19 21.65 0.24 -51.51 16 2 C -0.04 -2.28 4.91 84.86 0.42 -1.86 16 3 Si 0.96 43.08 29.59 68.60 2.03 45.11 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 7 C -0.27 -14.04 9.59 84.03 0.81 -13.24 16 8 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 9 N -0.60 -28.78 2.99 -699.08 -2.09 -30.87 16 10 C 0.15 6.08 6.25 86.36 0.54 6.62 16 11 C -0.13 -4.72 5.77 30.67 0.18 -4.54 16 12 C 0.17 6.16 2.47 45.02 0.11 6.27 16 13 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 14 N -0.70 -24.55 4.15 -446.02 -1.85 -26.41 16 15 C 0.54 18.89 7.73 86.57 0.67 19.56 16 16 O -0.59 -23.31 14.79 -4.06 -0.06 -23.37 16 17 C -0.22 -6.01 10.03 23.43 0.23 -5.77 16 18 C -0.07 -1.62 6.88 -17.00 -0.12 -1.74 16 19 C -0.10 -1.45 8.04 30.41 0.24 -1.21 16 20 C -0.13 -1.95 8.11 31.13 0.25 -1.69 16 21 C -0.11 -2.55 7.07 30.51 0.22 -2.33 16 22 C 0.08 3.14 3.36 30.67 0.10 3.24 16 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 24 O -0.57 -19.47 13.21 -148.98 -1.97 -21.43 16 25 C 0.16 7.06 4.64 86.37 0.40 7.46 16 26 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 27 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 28 H 0.02 0.70 7.75 -2.38 -0.02 0.68 16 29 H 0.07 2.45 8.14 -2.38 -0.02 2.44 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.40 14.13 6.85 -92.71 -0.64 13.49 16 32 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.69 7.50 -2.39 -0.02 1.67 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.39 10.49 9.08 -74.05 -0.67 9.82 16 40 H 0.07 3.31 6.03 -2.39 -0.01 3.30 16 41 H 0.01 0.54 6.64 -2.39 -0.02 0.52 16 Total: -1.00 -64.90 330.84 0.09 -64.81 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.26 Total: 32.90 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 4.05 Total: 10.77 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -3.70 Total: -108.79 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -2.03 Total: -44.80 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -64.90 0.09 -64.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.098 kcal (2) G-P(sol) polarization free energy of solvation -64.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds