Wall clock time and date at job start Tue Mar 31 2020 02:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47018 * 239.99957 * 3 2 1 5 5 H 1.48499 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47006 * 120.00211 * 3 2 1 7 7 C 1.38810 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99784 * 197.34988 * 7 2 1 9 9 N 1.36930 * 120.00161 * 17.34821 * 7 2 1 10 10 C 1.46929 * 120.62792 * 27.70215 * 9 7 2 11 11 C 1.53194 * 108.77899 * 126.37073 * 10 9 7 12 12 C 1.53042 * 109.31434 * 54.63076 * 11 10 9 13 13 H 1.09001 * 109.45953 * 178.62139 * 12 11 10 14 14 N 1.46494 * 109.45772 * 58.65525 * 12 11 10 15 15 C 1.34785 * 119.99751 * 84.93483 * 14 12 11 16 16 O 1.21607 * 119.99533 * 359.97438 * 15 14 12 17 17 C 1.47097 * 119.99968 * 179.97438 * 15 14 12 18 18 C 1.32993 * 120.00187 * 180.02562 * 17 15 14 19 19 C 1.51404 * 136.31190 * 359.62423 * 18 17 15 20 20 C 1.53380 * 87.51704 * 206.06221 * 19 18 17 21 21 C 1.51408 * 136.31915 * 180.02562 * 18 17 15 22 22 C 1.53044 * 109.53468 * 298.63781 * 12 11 10 23 23 H 1.09003 * 109.50064 * 301.41287 * 22 12 11 24 24 O 1.42904 * 109.49322 * 181.31378 * 22 12 11 25 25 C 1.46927 * 120.63467 * 207.67379 * 9 7 2 26 26 H 0.97003 * 120.00512 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58636 * 246.15350 * 10 9 7 28 28 H 1.08996 * 109.58906 * 6.57655 * 10 9 7 29 29 H 1.08994 * 109.49887 * 174.58802 * 11 10 9 30 30 H 1.09003 * 109.49181 * 294.64936 * 11 10 9 31 31 H 0.96998 * 120.00512 * 264.93233 * 14 12 11 32 32 H 1.08004 * 119.99756 * 0.02562 * 17 15 14 33 33 H 1.08996 * 113.56470 * 320.64393 * 19 18 17 34 34 H 1.09000 * 113.56188 * 91.38125 * 19 18 17 35 35 H 1.09002 * 113.96808 * 220.29294 * 20 19 18 36 36 H 1.08999 * 113.71202 * 88.81190 * 20 19 18 37 37 H 1.08997 * 113.55916 * 268.62354 * 21 18 17 38 38 H 1.08997 * 113.56064 * 39.35416 * 21 18 17 39 39 H 0.96699 * 113.99578 * 180.16174 * 24 22 12 40 40 H 1.08999 * 109.58091 * 113.84324 * 25 9 7 41 41 H 1.08998 * 109.70062 * 353.49360 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3723 -2.3609 -0.3546 10 6 0.2280 -2.3340 -1.2758 11 6 0.5014 -3.3031 -2.4303 12 6 0.8196 -4.6887 -1.8635 13 1 0.9905 -5.3860 -2.6836 14 7 -0.3082 -5.1552 -1.0533 15 6 -1.3497 -5.7759 -1.6420 16 8 -1.3534 -5.9481 -2.8458 17 6 -2.4819 -6.2449 -0.8284 18 6 -3.5094 -6.8578 -1.4092 19 6 -3.8954 -7.2495 -2.8198 20 6 -5.3591 -7.1849 -2.3659 21 6 -4.8185 -7.4688 -0.9559 22 6 2.0751 -4.6090 -0.9920 23 1 2.9090 -4.2383 -1.5881 24 8 2.3890 -5.9089 -0.4880 25 6 1.8195 -3.6548 0.1788 26 1 -0.4851 0.8400 0.0004 27 1 -0.6742 -2.6411 -0.7469 28 1 0.0984 -1.3254 -1.6683 29 1 -0.3792 -3.3650 -3.0696 30 1 1.3497 -2.9444 -3.0132 31 1 -0.3054 -5.0176 -0.0931 32 1 -2.4787 -6.0916 0.2407 33 1 -3.6389 -6.4980 -3.5664 34 1 -3.5695 -8.2517 -3.0984 35 1 -5.9829 -7.9834 -2.7675 36 1 -5.8085 -6.1978 -2.4745 37 1 -4.7459 -8.5311 -0.7228 38 1 -5.3186 -6.8970 -0.1743 39 1 3.1740 -5.9330 0.0761 40 1 1.0471 -4.0695 0.8264 41 1 2.7394 -3.5196 0.7476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090182487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:45 Heat of formation + Delta-G solvation = -22.889097 kcal Electronic energy + Delta-G solvation = -22543.625415 eV Core-core repulsion = 19232.277138 eV Total energy + Delta-G solvation = -3311.348277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.84141 -38.71130 -37.49517 -35.41419 -33.93147 -31.84004 -30.88256 -29.78814 -28.49276 -25.81332 -25.36808 -23.50052 -22.26670 -21.84396 -20.80085 -18.69218 -18.22590 -17.05953 -16.82752 -16.45880 -15.55153 -15.50201 -14.95538 -14.66957 -14.36069 -14.14237 -13.79848 -13.62912 -13.23044 -12.70165 -12.52129 -12.28987 -12.04935 -11.89504 -11.72727 -11.63368 -11.17412 -11.04885 -10.87770 -10.66094 -10.48567 -10.40659 -10.18944 -9.94555 -9.80101 -9.41608 -9.32905 -9.12040 -8.53665 -8.44435 -6.77501 -5.86834 -3.30945 1.53627 3.33821 3.40446 3.41129 3.58290 3.67983 4.36151 4.42489 4.48945 4.55804 4.71875 5.03356 5.28261 5.29423 5.36431 5.46300 5.48852 5.54834 5.60610 5.65455 5.72298 5.74293 5.97800 6.01479 6.09568 6.15900 6.26739 6.31327 6.46646 6.57335 6.66974 6.70048 6.73021 7.03649 7.29240 7.60079 7.71238 7.93696 8.02202 8.35739 8.69619 9.11411 9.73876 10.29417 11.21242 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.004394 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.353727 B = 6370.540193 C = 7108.009055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.172 3.828 11 C -0.153 4.153 12 C 0.167 3.833 13 H 0.078 0.922 14 N -0.701 5.701 15 C 0.550 3.450 16 O -0.554 6.554 17 C -0.188 4.188 18 C -0.073 4.073 19 C -0.103 4.103 20 C -0.143 4.143 21 C -0.108 4.108 22 C 0.075 3.925 23 H 0.065 0.935 24 O -0.571 6.571 25 C 0.119 3.881 26 H 0.256 0.744 27 H 0.022 0.978 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.402 0.598 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.373 0.627 40 H 0.023 0.977 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 -13.187 -1.101 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.193 4.193 12 C 0.062 3.938 13 H 0.096 0.904 14 N -0.351 5.351 15 C 0.338 3.662 16 O -0.435 6.435 17 C -0.209 4.209 18 C -0.075 4.075 19 C -0.140 4.140 20 C -0.180 4.180 21 C -0.145 4.145 22 C 0.015 3.985 23 H 0.083 0.917 24 O -0.375 6.375 25 C -0.009 4.009 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.237 0.763 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.219 0.781 40 H 0.040 0.960 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.616 -13.297 -2.283 14.614 hybrid contribution 0.976 1.240 0.978 1.857 sum -4.640 -12.057 -1.305 12.985 Atomic orbital electron populations 1.70023 1.05306 1.25832 1.53120 1.25042 0.95272 0.98483 1.00467 0.86353 0.78930 0.83188 0.78168 1.20921 1.21569 1.20847 1.19121 0.92696 0.84746 1.42449 0.91629 1.43999 1.35961 1.00841 1.50294 1.20793 0.88467 0.98367 0.87710 1.22582 1.01435 0.94858 1.00424 1.20792 0.83832 0.96302 0.92870 0.90435 1.45827 1.19473 1.58257 1.11541 1.18324 0.82602 0.77693 0.87567 1.90718 1.79961 1.58089 1.14708 1.21678 0.93994 1.05448 0.99732 1.23345 0.92786 0.93133 0.98187 1.22168 0.94109 1.02561 0.95181 1.22722 0.96670 1.02375 0.96245 1.22319 0.93031 1.01097 0.98023 1.22753 0.96206 0.82914 0.96665 0.91663 1.86491 1.50637 1.30272 1.70084 1.21529 0.98439 0.87725 0.93183 0.93437 0.96006 0.89282 0.91878 0.91592 0.76272 0.85202 0.89542 0.88775 0.90679 0.89757 0.88431 0.90521 0.78074 0.95977 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 11.19 55.49 0.62 -24.86 16 2 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 3 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.89 9.59 -15.06 -0.14 -7.03 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -14.00 2.99 -172.32 -0.52 -14.51 16 10 C 0.17 4.04 5.05 -3.71 -0.02 4.02 16 11 C -0.15 -3.07 5.77 -26.61 -0.15 -3.22 16 12 C 0.17 3.08 2.47 -67.89 -0.17 2.92 16 13 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 14 N -0.70 -12.29 4.15 -54.95 -0.23 -12.52 16 15 C 0.55 9.76 7.73 -12.66 -0.10 9.66 16 16 O -0.55 -11.25 14.81 5.27 0.08 -11.17 16 17 C -0.19 -2.72 10.03 -37.81 -0.38 -3.09 16 18 C -0.07 -0.94 6.93 -100.48 -0.70 -1.64 16 19 C -0.10 -1.26 6.99 -27.56 -0.19 -1.45 16 20 C -0.14 -1.34 8.17 -26.20 -0.21 -1.55 16 21 C -0.11 -1.02 7.95 -27.41 -0.22 -1.23 16 22 C 0.08 1.30 3.36 -26.61 -0.09 1.21 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 O -0.57 -8.71 13.21 -35.23 -0.47 -9.17 16 25 C 0.12 2.31 5.84 -3.71 -0.02 2.29 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.02 0.54 7.74 -51.93 -0.40 0.14 16 28 H 0.09 2.37 6.03 -51.93 -0.31 2.05 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.40 6.74 6.85 -40.82 -0.28 6.46 16 32 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.09 1.23 7.49 -51.93 -0.39 0.84 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.37 4.07 9.08 45.56 0.41 4.48 16 40 H 0.02 0.44 6.64 -51.93 -0.34 0.09 16 41 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -31.20 330.78 -8.51 -39.71 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.47 Total: 10.44 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.48 Total: 0.96 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.12 Total: -51.89 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.39 Total: -20.34 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.20 -8.51 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.817 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds