Wall clock time and date at job start Tue Mar 31 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47018 * 239.99957 * 3 2 1 5 5 H 1.48499 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47006 * 120.00211 * 3 2 1 7 7 C 1.38810 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99784 * 197.34988 * 7 2 1 9 9 N 1.36930 * 120.00161 * 17.34821 * 7 2 1 10 10 C 1.46929 * 120.62792 * 27.70215 * 9 7 2 11 11 C 1.53194 * 108.77899 * 126.37073 * 10 9 7 12 12 C 1.53042 * 109.31434 * 54.63076 * 11 10 9 13 13 H 1.09001 * 109.45953 * 178.62139 * 12 11 10 14 14 N 1.46494 * 109.45772 * 58.65525 * 12 11 10 15 15 C 1.34785 * 119.99751 * 84.93483 * 14 12 11 16 16 O 1.21607 * 119.99533 * 359.97438 * 15 14 12 17 17 C 1.47097 * 119.99968 * 179.97438 * 15 14 12 18 18 C 1.32993 * 120.00187 * 180.02562 * 17 15 14 19 19 C 1.51404 * 136.31190 * 359.62423 * 18 17 15 20 20 C 1.53380 * 87.51704 * 206.06221 * 19 18 17 21 21 C 1.51408 * 136.31915 * 180.02562 * 18 17 15 22 22 C 1.53044 * 109.53468 * 298.63781 * 12 11 10 23 23 H 1.09003 * 109.50064 * 301.41287 * 22 12 11 24 24 O 1.42904 * 109.49322 * 181.31378 * 22 12 11 25 25 C 1.46927 * 120.63467 * 207.67379 * 9 7 2 26 26 H 0.97003 * 120.00512 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58636 * 246.15350 * 10 9 7 28 28 H 1.08996 * 109.58906 * 6.57655 * 10 9 7 29 29 H 1.08994 * 109.49887 * 174.58802 * 11 10 9 30 30 H 1.09003 * 109.49181 * 294.64936 * 11 10 9 31 31 H 0.96998 * 120.00512 * 264.93233 * 14 12 11 32 32 H 1.08004 * 119.99756 * 0.02562 * 17 15 14 33 33 H 1.08996 * 113.56470 * 320.64393 * 19 18 17 34 34 H 1.09000 * 113.56188 * 91.38125 * 19 18 17 35 35 H 1.09002 * 113.96808 * 220.29294 * 20 19 18 36 36 H 1.08999 * 113.71202 * 88.81190 * 20 19 18 37 37 H 1.08997 * 113.55916 * 268.62354 * 21 18 17 38 38 H 1.08997 * 113.56064 * 39.35416 * 21 18 17 39 39 H 0.96699 * 113.99578 * 180.16174 * 24 22 12 40 40 H 1.08999 * 109.58091 * 113.84324 * 25 9 7 41 41 H 1.08998 * 109.70062 * 353.49360 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3723 -2.3609 -0.3546 10 6 0.2280 -2.3340 -1.2758 11 6 0.5014 -3.3031 -2.4303 12 6 0.8196 -4.6887 -1.8635 13 1 0.9905 -5.3860 -2.6836 14 7 -0.3082 -5.1552 -1.0533 15 6 -1.3497 -5.7759 -1.6420 16 8 -1.3534 -5.9481 -2.8458 17 6 -2.4819 -6.2449 -0.8284 18 6 -3.5094 -6.8578 -1.4092 19 6 -3.8954 -7.2495 -2.8198 20 6 -5.3591 -7.1849 -2.3659 21 6 -4.8185 -7.4688 -0.9559 22 6 2.0751 -4.6090 -0.9920 23 1 2.9090 -4.2383 -1.5881 24 8 2.3890 -5.9089 -0.4880 25 6 1.8195 -3.6548 0.1788 26 1 -0.4851 0.8400 0.0004 27 1 -0.6742 -2.6411 -0.7469 28 1 0.0984 -1.3254 -1.6683 29 1 -0.3792 -3.3650 -3.0696 30 1 1.3497 -2.9444 -3.0132 31 1 -0.3054 -5.0176 -0.0931 32 1 -2.4787 -6.0916 0.2407 33 1 -3.6389 -6.4980 -3.5664 34 1 -3.5695 -8.2517 -3.0984 35 1 -5.9829 -7.9834 -2.7675 36 1 -5.8085 -6.1978 -2.4745 37 1 -4.7459 -8.5311 -0.7228 38 1 -5.3186 -6.8970 -0.1743 39 1 3.1740 -5.9330 0.0761 40 1 1.0471 -4.0695 0.8264 41 1 2.7394 -3.5196 0.7476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090182487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:44 Heat of formation + Delta-G solvation = -44.739197 kcal Electronic energy + Delta-G solvation = -22544.572906 eV Core-core repulsion = 19232.277138 eV Total energy + Delta-G solvation = -3312.295768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23629 -39.86024 -38.80430 -36.95171 -35.53831 -33.57034 -32.34116 -31.24771 -30.07109 -27.23660 -26.65448 -24.69281 -23.82941 -23.53664 -22.03848 -20.30172 -19.39610 -18.71019 -18.08039 -17.93554 -16.87092 -16.80976 -16.42799 -16.03353 -15.88608 -15.63526 -15.28825 -15.06590 -14.85913 -14.37908 -13.84970 -13.56250 -13.31655 -13.26260 -13.02059 -12.90211 -12.71048 -12.62906 -12.37245 -12.23044 -11.99354 -11.88828 -11.84567 -11.47274 -11.27640 -11.03754 -10.64746 -10.50722 -10.25676 -9.86248 -8.72146 -7.89684 -5.35917 0.41798 1.47801 1.50810 1.56820 2.27636 2.37286 2.49573 3.14479 3.26667 3.44506 3.59865 3.65406 3.83907 3.89488 4.05504 4.19969 4.25159 4.29458 4.37196 4.52427 4.62999 4.68129 4.75266 4.83928 4.87138 4.91310 4.97479 5.04081 5.05340 5.12977 5.27585 5.38005 5.39838 5.56606 5.62417 5.67806 5.69817 6.34448 6.65074 6.88687 7.11129 7.32134 7.80110 8.31705 9.16556 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.004394 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.353727 B = 6370.540193 C = 7108.009055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.046 4.046 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.268 4.268 8 H 0.073 0.927 9 N -0.601 5.601 10 C 0.186 3.814 11 C -0.139 4.139 12 C 0.169 3.831 13 H 0.071 0.929 14 N -0.699 5.699 15 C 0.542 3.458 16 O -0.588 6.588 17 C -0.215 4.215 18 C -0.072 4.072 19 C -0.116 4.116 20 C -0.132 4.132 21 C -0.095 4.095 22 C 0.096 3.904 23 H 0.070 0.930 24 O -0.571 6.571 25 C 0.119 3.881 26 H 0.250 0.750 27 H 0.003 0.997 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.405 0.595 32 H 0.150 0.850 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.395 0.605 40 H 0.025 0.975 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 -14.732 -0.297 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.326 5.326 10 C 0.060 3.940 11 C -0.179 4.179 12 C 0.063 3.937 13 H 0.089 0.911 14 N -0.349 5.349 15 C 0.333 3.667 16 O -0.471 6.471 17 C -0.235 4.235 18 C -0.074 4.074 19 C -0.153 4.153 20 C -0.169 4.169 21 C -0.131 4.131 22 C 0.035 3.965 23 H 0.088 0.912 24 O -0.378 6.378 25 C -0.007 4.007 26 H 0.059 0.941 27 H 0.021 0.979 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.242 0.758 32 H 0.168 0.832 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.245 0.755 40 H 0.043 0.957 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.502 -14.873 -1.446 15.924 hybrid contribution 0.938 1.624 0.705 2.004 sum -4.564 -13.249 -0.741 14.033 Atomic orbital electron populations 1.70176 1.06735 1.25993 1.54876 1.25775 0.95938 1.01508 1.00951 0.85365 0.77573 0.79247 0.78387 1.20506 1.22334 1.19866 1.19499 0.93178 0.85795 1.41271 0.90922 1.44162 1.35750 1.01911 1.50783 1.20465 0.88050 0.97042 0.88413 1.22377 1.01201 0.95322 0.99024 1.20664 0.85004 0.94711 0.93284 0.91056 1.45804 1.19354 1.58186 1.11571 1.18940 0.83184 0.77044 0.87528 1.90691 1.80691 1.59538 1.16199 1.21669 0.93740 1.07713 1.00426 1.23939 0.93271 0.90985 0.99185 1.22326 0.96606 1.02182 0.94169 1.22704 0.94954 1.03260 0.95995 1.22404 0.90089 1.02330 0.98288 1.22336 0.95554 0.83260 0.95349 0.91231 1.86462 1.52168 1.28526 1.70624 1.21669 0.98811 0.86152 0.94118 0.94108 0.97912 0.92813 0.92689 0.91249 0.75833 0.83249 0.92499 0.87734 0.88062 0.90087 0.85955 0.89166 0.75479 0.95694 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.15 11.19 21.65 0.24 -53.91 16 2 C -0.05 -2.49 4.91 84.86 0.42 -2.07 16 3 Si 0.97 43.73 29.59 68.60 2.03 45.76 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.27 -14.07 9.59 84.03 0.81 -13.26 16 8 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 9 N -0.60 -28.69 2.99 -699.11 -2.09 -30.78 16 10 C 0.19 8.98 5.05 86.36 0.44 9.41 16 11 C -0.14 -5.69 5.77 30.67 0.18 -5.51 16 12 C 0.17 6.20 2.47 45.02 0.11 6.31 16 13 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 14 N -0.70 -24.55 4.15 -446.01 -1.85 -26.40 16 15 C 0.54 19.49 7.73 86.57 0.67 20.16 16 16 O -0.59 -24.50 14.81 -4.05 -0.06 -24.56 16 17 C -0.21 -6.11 10.03 23.43 0.23 -5.88 16 18 C -0.07 -1.77 6.93 -17.17 -0.12 -1.89 16 19 C -0.12 -2.73 6.99 30.06 0.21 -2.52 16 20 C -0.13 -2.15 8.17 30.94 0.25 -1.90 16 21 C -0.09 -1.48 7.95 30.15 0.24 -1.25 16 22 C 0.10 3.16 3.36 30.67 0.10 3.26 16 23 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 24 O -0.57 -15.97 13.21 -148.98 -1.97 -17.94 16 25 C 0.12 4.47 5.84 86.36 0.50 4.98 16 26 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 27 H 0.00 0.14 7.74 -2.39 -0.02 0.12 16 28 H 0.05 2.97 6.03 -2.39 -0.01 2.96 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.41 13.49 6.85 -92.71 -0.64 12.85 16 32 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.06 1.68 7.49 -2.39 -0.02 1.66 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.40 7.33 9.08 -74.06 -0.67 6.65 16 40 H 0.03 0.95 6.64 -2.39 -0.02 0.93 16 41 H 0.07 2.48 7.94 -2.39 -0.02 2.46 16 Total: -1.00 -68.27 330.78 0.08 -68.20 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.26 Total: 29.79 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 4.04 Total: 9.84 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -3.70 Total: -111.09 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -2.03 Total: -42.50 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.27 0.08 -68.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.457 kcal (2) G-P(sol) polarization free energy of solvation -68.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds