Wall clock time and date at job start Tue Mar 31 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.46995 * 300.00467 * 3 2 1 6 6 H 1.48504 * 109.46877 * 60.00242 * 3 2 1 7 7 C 1.38819 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99792 * 162.88142 * 7 2 1 9 9 N 1.36933 * 119.99952 * 343.15781 * 7 2 1 10 10 C 1.46933 * 120.63018 * 331.90219 * 9 7 2 11 11 C 1.52758 * 109.00408 * 233.58569 * 10 9 7 12 12 C 1.53045 * 109.38486 * 305.58278 * 11 10 9 13 13 H 1.08997 * 109.45775 * 301.22336 * 12 11 10 14 14 N 1.46497 * 109.46163 * 181.26028 * 12 11 10 15 15 C 1.34783 * 119.99715 * 84.93376 * 14 12 11 16 16 O 1.21616 * 119.99992 * 0.02562 * 15 14 12 17 17 C 1.47094 * 119.99991 * 179.97438 * 15 14 12 18 18 C 1.33002 * 119.99905 * 180.02562 * 17 15 14 19 19 C 1.51395 * 136.31549 * 359.63064 * 18 17 15 20 20 C 1.53380 * 87.51750 * 206.05693 * 19 18 17 21 21 C 1.51402 * 136.31453 * 180.02562 * 18 17 15 22 22 C 1.53043 * 109.53544 * 61.24180 * 12 11 10 23 23 H 1.09005 * 109.49745 * 58.59022 * 22 12 11 24 24 O 1.42899 * 109.49537 * 178.68646 * 22 12 11 25 25 C 1.46925 * 120.63218 * 152.17898 * 9 7 2 26 26 H 0.97002 * 120.00067 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.58175 * 353.41399 * 10 9 7 28 28 H 1.08993 * 109.58871 * 113.84088 * 10 9 7 29 29 H 1.09006 * 109.56332 * 185.55045 * 11 10 9 30 30 H 1.08994 * 109.39241 * 65.51309 * 11 10 9 31 31 H 0.96995 * 120.00500 * 264.93554 * 14 12 11 32 32 H 1.07999 * 120.00336 * 0.02562 * 17 15 14 33 33 H 1.09000 * 113.56489 * 320.64070 * 19 18 17 34 34 H 1.09000 * 113.55827 * 91.37722 * 19 18 17 35 35 H 1.09003 * 113.96848 * 220.29121 * 20 19 18 36 36 H 1.08997 * 113.71031 * 88.80733 * 20 19 18 37 37 H 1.09005 * 113.55615 * 268.62817 * 21 18 17 38 38 H 1.09001 * 113.56686 * 39.35332 * 21 18 17 39 39 H 0.96708 * 113.99384 * 179.84360 * 24 22 12 40 40 H 1.09000 * 109.58428 * 246.15764 * 25 9 7 41 41 H 1.09000 * 109.58483 * 6.57936 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0544 -1.2227 -0.2759 9 7 1.3697 -2.3628 0.3425 10 6 0.2237 -2.3417 1.2619 11 6 0.4867 -3.3179 2.4071 12 6 0.8071 -4.6999 1.8331 13 1 -0.0289 -5.0426 1.2235 14 7 1.0301 -5.6445 2.9305 15 6 -0.0170 -6.2675 3.5066 16 8 -1.1469 -6.0459 3.1151 17 6 0.2068 -7.2163 4.6081 18 6 -0.8265 -7.8315 5.1762 19 6 -2.3304 -7.8333 5.0021 20 6 -2.4334 -8.2528 6.4738 21 6 -1.0243 -8.8372 6.2905 22 6 2.0674 -4.6156 0.9690 23 1 2.8983 -4.2493 1.5722 24 8 2.3832 -5.9123 0.4583 25 6 1.8189 -3.6535 -0.1969 26 1 -0.4850 0.8401 0.0004 27 1 0.0954 -1.3363 1.6628 28 1 -0.6781 -2.6426 0.7287 29 1 -0.3975 -3.3834 3.0412 30 1 1.3321 -2.9641 2.9972 31 1 1.9313 -5.8215 3.2425 32 1 1.2102 -7.4135 4.9555 33 1 -2.7470 -6.8461 4.8019 34 1 -2.6875 -8.5927 4.3066 35 1 -3.1998 -9.0033 6.6677 36 1 -2.4746 -7.4128 7.1672 37 1 -1.0229 -9.8722 5.9485 38 1 -0.3699 -8.6734 7.1467 39 1 3.1715 -5.9332 -0.1015 40 1 1.0498 -4.0635 -0.8515 41 1 2.7427 -3.5133 -0.7582 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090182488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:48 Heat of formation + Delta-G solvation = -25.300123 kcal Electronic energy + Delta-G solvation = -22161.795518 eV Core-core repulsion = 18850.342691 eV Total energy + Delta-G solvation = -3311.452827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.82889 -38.70698 -37.60563 -35.39309 -34.18563 -32.02656 -30.97371 -29.73955 -28.46220 -25.91020 -25.27318 -23.44946 -22.32749 -21.77784 -20.34772 -19.57209 -18.19824 -17.16386 -16.68473 -16.52782 -15.94353 -15.62361 -14.93098 -14.64009 -14.30718 -14.11006 -13.89151 -13.50344 -13.18377 -12.76929 -12.61230 -12.27955 -12.09900 -12.02141 -11.82657 -11.55118 -11.14376 -11.09617 -10.88850 -10.69117 -10.56342 -10.29550 -10.23533 -9.93959 -9.73469 -9.64310 -9.31616 -9.23950 -8.65978 -8.41187 -6.76273 -5.84228 -3.28537 1.40894 3.33998 3.41963 3.43664 3.44631 3.56243 4.29655 4.36190 4.40254 4.55039 4.62129 4.93605 5.17304 5.31805 5.34074 5.35533 5.46267 5.49768 5.53952 5.59084 5.64123 5.79671 5.89670 6.00030 6.06438 6.13317 6.19375 6.37921 6.50363 6.52692 6.60245 6.70274 6.79303 6.95503 7.31213 7.62163 7.73669 7.88028 7.94121 8.38289 8.58619 9.13858 9.76285 10.32317 11.24359 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.003701 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.974924 B = 7563.836517 C = 8132.895446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.163 3.837 13 H 0.087 0.913 14 N -0.713 5.713 15 C 0.546 3.454 16 O -0.544 6.544 17 C -0.192 4.192 18 C -0.070 4.070 19 C -0.105 4.105 20 C -0.143 4.143 21 C -0.108 4.108 22 C 0.080 3.920 23 H 0.056 0.944 24 O -0.571 6.571 25 C 0.121 3.879 26 H 0.255 0.745 27 H 0.093 0.907 28 H 0.023 0.977 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.396 0.604 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.373 0.627 40 H 0.029 0.971 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -15.701 10.822 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.186 4.186 12 C 0.059 3.941 13 H 0.105 0.895 14 N -0.362 5.362 15 C 0.335 3.665 16 O -0.424 6.424 17 C -0.213 4.213 18 C -0.072 4.072 19 C -0.142 4.142 20 C -0.180 4.180 21 C -0.145 4.145 22 C 0.019 3.981 23 H 0.074 0.926 24 O -0.375 6.375 25 C -0.007 4.007 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.147 0.853 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.219 0.781 40 H 0.047 0.953 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.360 -15.541 10.848 18.955 hybrid contribution 1.519 0.989 -0.171 1.821 sum 1.879 -14.551 10.677 18.146 Atomic orbital electron populations 1.70048 1.05295 1.25607 1.53276 1.25083 0.95306 0.98532 1.00544 0.86205 0.79290 0.83787 0.77344 1.20233 1.21651 1.21460 1.19204 0.92588 0.84572 1.42461 0.91502 1.44040 1.35663 1.01134 1.50417 1.20738 0.88687 0.98306 0.87763 1.22524 1.00990 0.94377 1.00707 1.20973 0.97393 0.89193 0.86496 0.89510 1.45972 1.09142 1.44502 1.36568 1.18369 0.84945 0.80562 0.82654 1.90770 1.22692 1.64895 1.64015 1.21669 0.98251 1.02078 0.99329 1.23405 0.95871 0.93994 0.93921 1.22193 0.92369 1.03580 0.96039 1.22724 0.96692 1.01109 0.97489 1.22329 0.97489 0.98123 0.96519 1.22780 0.96010 0.83134 0.96198 0.92640 1.86492 1.50369 1.30455 1.70187 1.21528 0.98741 0.87417 0.92982 0.93498 0.88915 0.95867 0.91930 0.92441 0.77115 0.85302 0.89404 0.88587 0.90565 0.89785 0.88329 0.90586 0.78070 0.95319 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 11.18 55.49 0.62 -25.37 16 2 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 3 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.26 -6.97 9.58 -15.06 -0.14 -7.11 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.58 3.00 -172.58 -0.52 -15.09 16 10 C 0.17 4.16 5.28 -3.93 -0.02 4.14 16 11 C -0.15 -2.95 5.64 -26.83 -0.15 -3.10 16 12 C 0.16 3.04 2.12 -67.89 -0.14 2.90 16 13 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 14 N -0.71 -11.20 4.91 -54.95 -0.27 -11.47 16 15 C 0.55 9.01 7.73 -12.67 -0.10 8.91 16 16 O -0.54 -10.95 14.81 5.26 0.08 -10.87 16 17 C -0.19 -2.42 10.03 -37.81 -0.38 -2.80 16 18 C -0.07 -0.81 6.93 -100.49 -0.70 -1.51 16 19 C -0.11 -1.20 6.99 -27.56 -0.19 -1.39 16 20 C -0.14 -1.20 8.17 -26.21 -0.21 -1.41 16 21 C -0.11 -0.88 7.95 -27.42 -0.22 -1.10 16 22 C 0.08 1.39 3.14 -26.61 -0.08 1.30 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 O -0.57 -8.74 13.16 -35.23 -0.46 -9.20 16 25 C 0.12 2.49 6.14 -3.71 -0.02 2.47 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.09 2.50 6.05 -51.93 -0.31 2.18 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.40 5.12 8.58 -40.82 -0.35 4.77 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.09 1.20 7.49 -51.93 -0.39 0.81 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.37 4.09 9.08 45.56 0.41 4.50 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -32.36 334.98 -8.63 -40.99 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.64 Total: 8.31 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -2.45 Total: 1.34 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.17 Total: -51.94 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.39 Total: -20.07 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.36 -8.63 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.690 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds