Wall clock time and date at job start Tue Mar 31 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.46995 * 300.00467 * 3 2 1 6 6 H 1.48504 * 109.46877 * 60.00242 * 3 2 1 7 7 C 1.38819 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99792 * 162.88142 * 7 2 1 9 9 N 1.36933 * 119.99952 * 343.15781 * 7 2 1 10 10 C 1.46933 * 120.63018 * 331.90219 * 9 7 2 11 11 C 1.52758 * 109.00408 * 233.58569 * 10 9 7 12 12 C 1.53045 * 109.38486 * 305.58278 * 11 10 9 13 13 H 1.08997 * 109.45775 * 301.22336 * 12 11 10 14 14 N 1.46497 * 109.46163 * 181.26028 * 12 11 10 15 15 C 1.34783 * 119.99715 * 84.93376 * 14 12 11 16 16 O 1.21616 * 119.99992 * 0.02562 * 15 14 12 17 17 C 1.47094 * 119.99991 * 179.97438 * 15 14 12 18 18 C 1.33002 * 119.99905 * 180.02562 * 17 15 14 19 19 C 1.51395 * 136.31549 * 359.63064 * 18 17 15 20 20 C 1.53380 * 87.51750 * 206.05693 * 19 18 17 21 21 C 1.51402 * 136.31453 * 180.02562 * 18 17 15 22 22 C 1.53043 * 109.53544 * 61.24180 * 12 11 10 23 23 H 1.09005 * 109.49745 * 58.59022 * 22 12 11 24 24 O 1.42899 * 109.49537 * 178.68646 * 22 12 11 25 25 C 1.46925 * 120.63218 * 152.17898 * 9 7 2 26 26 H 0.97002 * 120.00067 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.58175 * 353.41399 * 10 9 7 28 28 H 1.08993 * 109.58871 * 113.84088 * 10 9 7 29 29 H 1.09006 * 109.56332 * 185.55045 * 11 10 9 30 30 H 1.08994 * 109.39241 * 65.51309 * 11 10 9 31 31 H 0.96995 * 120.00500 * 264.93554 * 14 12 11 32 32 H 1.07999 * 120.00336 * 0.02562 * 17 15 14 33 33 H 1.09000 * 113.56489 * 320.64070 * 19 18 17 34 34 H 1.09000 * 113.55827 * 91.37722 * 19 18 17 35 35 H 1.09003 * 113.96848 * 220.29121 * 20 19 18 36 36 H 1.08997 * 113.71031 * 88.80733 * 20 19 18 37 37 H 1.09005 * 113.55615 * 268.62817 * 21 18 17 38 38 H 1.09001 * 113.56686 * 39.35332 * 21 18 17 39 39 H 0.96708 * 113.99384 * 179.84360 * 24 22 12 40 40 H 1.09000 * 109.58428 * 246.15764 * 25 9 7 41 41 H 1.09000 * 109.58483 * 6.57936 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0544 -1.2227 -0.2759 9 7 1.3697 -2.3628 0.3425 10 6 0.2237 -2.3417 1.2619 11 6 0.4867 -3.3179 2.4071 12 6 0.8071 -4.6999 1.8331 13 1 -0.0289 -5.0426 1.2235 14 7 1.0301 -5.6445 2.9305 15 6 -0.0170 -6.2675 3.5066 16 8 -1.1469 -6.0459 3.1151 17 6 0.2068 -7.2163 4.6081 18 6 -0.8265 -7.8315 5.1762 19 6 -2.3304 -7.8333 5.0021 20 6 -2.4334 -8.2528 6.4738 21 6 -1.0243 -8.8372 6.2905 22 6 2.0674 -4.6156 0.9690 23 1 2.8983 -4.2493 1.5722 24 8 2.3832 -5.9123 0.4583 25 6 1.8189 -3.6535 -0.1969 26 1 -0.4850 0.8401 0.0004 27 1 0.0954 -1.3363 1.6628 28 1 -0.6781 -2.6426 0.7287 29 1 -0.3975 -3.3834 3.0412 30 1 1.3321 -2.9641 2.9972 31 1 1.9313 -5.8215 3.2425 32 1 1.2102 -7.4135 4.9555 33 1 -2.7470 -6.8461 4.8019 34 1 -2.6875 -8.5927 4.3066 35 1 -3.1998 -9.0033 6.6677 36 1 -2.4746 -7.4128 7.1672 37 1 -1.0229 -9.8722 5.9485 38 1 -0.3699 -8.6734 7.1467 39 1 3.1715 -5.9332 -0.1015 40 1 1.0498 -4.0635 -0.8515 41 1 2.7427 -3.5133 -0.7582 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090182488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:47 Heat of formation + Delta-G solvation = -49.207244 kcal Electronic energy + Delta-G solvation = -22162.832209 eV Core-core repulsion = 18850.342691 eV Total energy + Delta-G solvation = -3312.489517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13118 -39.84074 -38.89123 -36.99598 -35.70257 -33.82610 -32.31311 -31.25816 -30.09473 -27.11426 -26.65231 -24.71628 -23.90294 -23.29495 -21.61189 -21.21525 -19.35035 -18.76904 -18.04098 -17.89473 -17.32530 -16.75305 -16.40338 -15.87004 -15.70387 -15.65224 -15.45415 -14.93491 -14.87101 -14.46711 -13.90134 -13.61983 -13.32861 -13.30219 -13.01569 -12.89272 -12.76317 -12.63451 -12.38602 -12.10948 -12.05419 -11.89741 -11.89128 -11.51668 -11.32498 -11.09286 -10.66103 -10.58089 -10.26201 -9.87688 -8.78610 -7.91468 -5.39529 0.40959 1.47423 1.49062 1.59961 2.20505 2.35490 2.48304 3.11241 3.25588 3.43301 3.60205 3.61365 3.83939 3.86486 4.05004 4.20198 4.21237 4.27623 4.37210 4.52307 4.62350 4.68747 4.75356 4.82316 4.85838 4.92525 4.95544 5.01236 5.05176 5.10133 5.27359 5.35620 5.36903 5.52288 5.58277 5.63783 5.69137 6.32254 6.67074 6.88072 7.07933 7.34421 7.76062 8.29233 9.16212 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.003701 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.974924 B = 7563.836517 C = 8132.895446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.265 4.265 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.181 3.819 11 C -0.128 4.128 12 C 0.171 3.829 13 H 0.051 0.949 14 N -0.701 5.701 15 C 0.537 3.463 16 O -0.592 6.592 17 C -0.207 4.207 18 C -0.073 4.073 19 C -0.123 4.123 20 C -0.133 4.133 21 C -0.090 4.090 22 C 0.103 3.897 23 H 0.075 0.925 24 O -0.571 6.571 25 C 0.117 3.883 26 H 0.251 0.749 27 H 0.063 0.937 28 H -0.011 1.011 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.413 0.587 32 H 0.165 0.835 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.396 0.604 40 H 0.010 0.990 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 -17.625 12.575 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.395 4.395 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.055 3.945 11 C -0.168 4.168 12 C 0.065 3.935 13 H 0.069 0.931 14 N -0.351 5.351 15 C 0.328 3.672 16 O -0.475 6.475 17 C -0.227 4.227 18 C -0.075 4.075 19 C -0.160 4.160 20 C -0.170 4.170 21 C -0.127 4.127 22 C 0.042 3.958 23 H 0.093 0.907 24 O -0.378 6.378 25 C -0.009 4.009 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.007 0.993 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.250 0.750 32 H 0.182 0.818 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.115 0.885 39 H 0.246 0.754 40 H 0.028 0.972 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.953 -17.512 12.604 21.778 hybrid contribution 0.654 1.507 -0.786 1.822 sum 3.607 -16.005 11.818 20.219 Atomic orbital electron populations 1.70221 1.07010 1.26007 1.55075 1.25924 0.96013 1.01946 1.00886 0.85132 0.78818 0.79372 0.76637 1.18404 1.22131 1.21774 1.19621 0.93161 0.85388 1.41332 0.90402 1.44248 1.35406 1.02282 1.50906 1.20438 0.87806 0.97612 0.88687 1.22238 1.01064 0.94596 0.98905 1.20592 0.97087 0.88540 0.87262 0.93090 1.45743 1.10151 1.43620 1.35589 1.19149 0.84179 0.80684 0.83156 1.90755 1.24574 1.66530 1.65632 1.21687 1.00369 1.01983 0.98681 1.23947 0.95388 0.93903 0.94255 1.22350 0.92920 1.02021 0.98728 1.22714 0.97962 1.01606 0.94717 1.22363 0.96989 0.97919 0.95417 1.22298 0.95659 0.83242 0.94611 0.90714 1.86463 1.52003 1.28593 1.70732 1.21702 0.98675 0.86277 0.94279 0.94037 0.91898 0.99328 0.92784 0.91154 0.74994 0.81781 0.92822 0.88279 0.88448 0.89805 0.86216 0.88517 0.75379 0.97184 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.29 11.18 21.65 0.24 -56.04 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.49 16 3 Si 0.97 44.24 29.59 68.60 2.03 46.27 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.27 -14.27 9.58 84.04 0.81 -13.46 16 8 H 0.08 3.95 7.88 -2.91 -0.02 3.93 16 9 N -0.60 -30.35 3.00 -699.93 -2.10 -32.45 16 10 C 0.18 9.24 5.28 86.22 0.45 9.69 16 11 C -0.13 -5.29 5.64 30.53 0.17 -5.12 16 12 C 0.17 6.38 2.12 45.02 0.10 6.48 16 13 H 0.05 2.29 7.58 -2.39 -0.02 2.28 16 14 N -0.70 -21.27 4.91 -446.00 -2.19 -23.46 16 15 C 0.54 17.64 7.73 86.57 0.67 18.31 16 16 O -0.59 -24.89 14.81 -4.08 -0.06 -24.95 16 17 C -0.21 -4.82 10.03 23.43 0.23 -4.59 16 18 C -0.07 -1.56 6.93 -17.18 -0.12 -1.68 16 19 C -0.12 -2.79 6.99 30.06 0.21 -2.58 16 20 C -0.13 -1.92 8.17 30.93 0.25 -1.67 16 21 C -0.09 -1.14 7.95 30.15 0.24 -0.90 16 22 C 0.10 3.41 3.14 30.67 0.10 3.51 16 23 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 24 O -0.57 -15.97 13.16 -148.98 -1.96 -17.93 16 25 C 0.12 4.78 6.14 86.36 0.53 5.31 16 26 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.06 3.57 6.05 -2.39 -0.01 3.55 16 28 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 29 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.41 9.58 8.58 -92.71 -0.80 8.78 16 32 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.05 1.57 7.49 -2.39 -0.02 1.55 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.40 7.27 9.08 -74.05 -0.67 6.59 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.08 2.86 7.93 -2.39 -0.02 2.84 16 Total: -1.00 -73.84 334.98 -0.41 -74.25 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.43 Total: 23.50 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 4.06 Total: 10.83 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -4.05 Total: -111.96 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -2.02 Total: -42.88 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -73.84 -0.41 -74.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.039 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds