Wall clock time and date at job start Tue Mar 31 2020 02:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00176 * 2 1 4 4 H 1.48500 * 109.46614 * 274.88531 * 3 2 1 5 5 H 1.48500 * 109.47063 * 34.88278 * 3 2 1 6 6 H 1.48500 * 109.47114 * 154.88735 * 3 2 1 7 7 C 1.38809 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99817 * 339.73372 * 7 2 1 9 9 N 1.36938 * 120.00357 * 159.73775 * 7 2 1 10 10 C 1.46925 * 120.63163 * 152.78620 * 9 7 2 11 11 C 1.53187 * 108.77727 * 126.41324 * 10 9 7 12 12 C 1.53046 * 109.31356 * 54.63178 * 11 10 9 13 13 H 1.09005 * 109.45504 * 58.63978 * 12 11 10 14 14 N 1.46498 * 109.46008 * 178.61425 * 12 11 10 15 15 C 1.34771 * 119.99998 * 274.99709 * 14 12 11 16 16 O 1.21611 * 120.00468 * 0.02562 * 15 14 12 17 17 C 1.47107 * 119.99765 * 180.02562 * 15 14 12 18 18 C 1.32991 * 119.99811 * 180.02562 * 17 15 14 19 19 C 1.51586 * 135.78276 * 180.02562 * 18 17 15 20 20 C 1.53840 * 86.75854 * 205.13313 * 19 18 17 21 21 C 1.51584 * 135.78513 * 359.97210 * 18 17 15 22 22 C 1.53043 * 109.53652 * 298.63859 * 12 11 10 23 23 H 1.09001 * 109.49656 * 301.40764 * 22 12 11 24 24 O 1.42906 * 109.49319 * 181.31662 * 22 12 11 25 25 C 1.46927 * 120.62746 * 332.80478 * 9 7 2 26 26 H 0.96997 * 120.00074 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.58931 * 6.62026 * 10 9 7 28 28 H 1.09002 * 109.58282 * 246.19971 * 10 9 7 29 29 H 1.09005 * 109.49929 * 294.68383 * 11 10 9 30 30 H 1.08999 * 109.49923 * 174.57865 * 11 10 9 31 31 H 0.97005 * 119.99954 * 95.00400 * 14 12 11 32 32 H 1.08000 * 120.00063 * 0.02562 * 17 15 14 33 33 H 1.08996 * 113.66316 * 90.66644 * 19 18 17 34 34 H 1.09000 * 113.66573 * 319.59837 * 19 18 17 35 35 H 1.08995 * 113.65680 * 89.68324 * 20 19 18 36 36 H 1.08997 * 113.65903 * 220.73014 * 20 19 18 37 37 H 1.08999 * 113.66762 * 40.39422 * 21 18 17 38 38 H 1.09003 * 113.66652 * 269.33435 * 21 18 17 39 39 H 0.96698 * 113.99545 * 180.02562 * 24 22 12 40 40 H 1.08996 * 109.58495 * 353.37599 * 25 9 7 41 41 H 1.09001 * 109.58226 * 113.65554 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3944 2.1059 -1.3950 5 1 1.5031 2.6207 0.8007 6 1 3.5956 1.4125 0.5942 7 6 2.0102 -1.2021 0.0005 8 1 1.5203 -2.1083 0.3249 9 7 3.3160 -1.2391 -0.4101 10 6 4.2333 -2.2657 0.1029 11 6 4.8800 -2.9867 -1.0840 12 6 5.5403 -1.9566 -2.0033 13 1 6.2864 -1.3943 -1.4418 14 7 6.1882 -2.6453 -3.1223 15 6 7.4378 -3.1303 -2.9824 16 8 8.0274 -2.9967 -1.9272 17 6 8.0885 -3.8215 -4.1062 18 6 9.3215 -4.3005 -3.9680 19 6 10.3030 -5.0451 -4.8512 20 6 10.9258 -5.5868 -3.5530 21 6 10.3547 -4.3378 -2.8595 22 6 4.4776 -0.9960 -2.5422 23 1 3.7177 -1.5604 -3.0828 24 8 5.0903 -0.0535 -3.4245 25 6 3.8264 -0.2525 -1.3719 26 1 -0.4850 0.8400 0.0004 27 1 3.6781 -2.9827 0.7075 28 1 5.0067 -1.7945 0.7096 29 1 4.1163 -3.5323 -1.6383 30 1 5.6337 -3.6845 -0.7191 31 1 5.7178 -2.7522 -3.9639 32 1 7.5651 -3.9398 -5.0434 33 1 10.9675 -4.3906 -5.4153 34 1 9.8396 -5.8146 -5.4685 35 1 10.4795 -6.5203 -3.2102 36 1 12.0152 -5.6177 -3.5702 37 1 9.9327 -4.5383 -1.8747 38 1 11.0336 -3.4851 -2.8653 39 1 4.4742 0.5880 -3.8039 40 1 3.0026 0.3587 -1.7403 41 1 4.5647 0.3845 -0.8847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090182489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:51 Heat of formation + Delta-G solvation = -20.672694 kcal Electronic energy + Delta-G solvation = -22272.559136 eV Core-core repulsion = 18961.306969 eV Total energy + Delta-G solvation = -3311.252166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.95492 -38.79867 -37.76360 -35.51352 -34.37469 -32.26764 -31.11602 -29.89906 -29.06592 -26.03824 -25.29729 -23.48151 -22.88207 -21.69673 -20.50266 -19.81298 -18.32467 -17.16946 -16.88569 -16.70107 -16.23307 -15.69828 -15.22176 -14.64928 -14.42019 -14.34072 -14.04411 -13.67618 -13.35903 -12.85653 -12.69541 -12.49798 -12.36525 -12.18028 -12.06161 -11.88822 -11.39235 -11.17674 -11.00368 -10.89140 -10.74329 -10.51363 -10.35782 -9.88731 -9.67545 -9.59575 -9.45420 -9.32335 -8.72580 -8.69282 -7.08549 -6.02455 -3.39723 1.32222 3.23857 3.31353 3.44278 3.44830 3.47872 4.22663 4.26897 4.36270 4.45761 4.54190 4.87922 4.91191 5.07139 5.21509 5.27993 5.29485 5.40087 5.46028 5.48354 5.57249 5.61833 5.76947 5.81755 5.83003 5.98934 6.03743 6.09039 6.26798 6.29090 6.39828 6.47917 6.50582 6.57628 6.76849 6.82987 7.75283 7.78798 7.94592 8.25218 8.45583 8.84457 9.62947 9.99146 11.13158 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039066 B = 0.003746 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.563784 B = 7472.252302 C = 7713.251255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.089 0.911 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.141 4.141 12 C 0.163 3.837 13 H 0.088 0.912 14 N -0.712 5.712 15 C 0.548 3.452 16 O -0.546 6.546 17 C -0.196 4.196 18 C -0.067 4.067 19 C -0.109 4.109 20 C -0.142 4.142 21 C -0.105 4.105 22 C 0.080 3.920 23 H 0.063 0.937 24 O -0.571 6.571 25 C 0.102 3.898 26 H 0.264 0.736 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.398 0.602 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.376 0.624 40 H 0.077 0.923 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.183 -8.297 -10.980 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.711 3.289 4 H -0.218 1.218 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.390 4.390 8 H 0.107 0.893 9 N -0.327 5.327 10 C 0.022 3.978 11 C -0.181 4.181 12 C 0.058 3.942 13 H 0.106 0.894 14 N -0.361 5.361 15 C 0.337 3.663 16 O -0.426 6.426 17 C -0.216 4.216 18 C -0.069 4.069 19 C -0.146 4.146 20 C -0.180 4.180 21 C -0.141 4.141 22 C 0.019 3.981 23 H 0.081 0.919 24 O -0.375 6.375 25 C -0.025 4.025 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.232 0.768 32 H 0.148 0.852 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.223 0.777 40 H 0.095 0.905 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.958 -8.448 -10.030 22.237 hybrid contribution -0.557 1.315 -0.702 1.592 sum 17.401 -7.133 -10.731 21.653 Atomic orbital electron populations 1.69826 1.05701 1.26652 1.52699 1.25296 0.95263 0.97597 0.99416 0.86980 0.80287 0.84629 0.76955 1.21789 1.22933 1.19316 1.18948 0.84540 0.94929 1.40628 0.89342 1.44331 1.08700 1.32867 1.46827 1.20967 0.92448 0.91298 0.93084 1.22420 0.99655 0.97915 0.98094 1.20923 0.94012 0.92063 0.87164 0.89365 1.45928 1.15648 1.57979 1.16565 1.18381 0.81255 0.78810 0.87872 1.90757 1.64370 1.58446 1.29016 1.21696 0.96448 1.04286 0.99219 1.23562 0.93453 0.91610 0.98271 1.22391 0.96541 0.98879 0.96767 1.22841 1.00647 0.98256 0.96209 1.22307 0.95724 0.97643 0.98456 1.22789 0.93569 0.90138 0.91632 0.91945 1.86450 1.39787 1.47037 1.64252 1.22018 0.97633 0.92748 0.90071 0.92659 0.91148 0.95347 0.91569 0.91362 0.76827 0.85239 0.88269 0.90369 0.89824 0.90667 0.89322 0.88552 0.77669 0.90505 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.25 13.97 55.49 0.78 -26.47 16 2 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 3 Si 0.88 22.00 24.35 -169.99 -4.14 17.86 16 4 H -0.29 -6.86 6.70 56.52 0.38 -6.48 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.69 6.45 56.52 0.36 -6.32 16 7 C -0.26 -7.17 10.04 -15.06 -0.15 -7.33 16 8 H 0.09 2.57 8.05 -52.49 -0.42 2.15 16 9 N -0.60 -14.08 2.77 -172.33 -0.48 -14.56 16 10 C 0.15 2.96 6.52 -3.71 -0.02 2.93 16 11 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 12 C 0.16 2.81 2.12 -67.89 -0.14 2.67 16 13 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 14 N -0.71 -10.42 4.91 -54.94 -0.27 -10.69 16 15 C 0.55 8.37 7.73 -12.66 -0.10 8.27 16 16 O -0.55 -10.13 14.77 5.27 0.08 -10.05 16 17 C -0.20 -2.29 10.03 -37.80 -0.38 -2.67 16 18 C -0.07 -0.72 6.87 -100.38 -0.69 -1.41 16 19 C -0.11 -0.81 8.05 -27.01 -0.22 -1.03 16 20 C -0.14 -1.09 8.11 -25.93 -0.21 -1.30 16 21 C -0.10 -1.10 7.06 -27.00 -0.19 -1.29 16 22 C 0.08 1.41 3.14 -26.61 -0.08 1.32 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 24 O -0.57 -9.13 13.16 -35.23 -0.46 -9.60 16 25 C 0.10 2.19 3.82 -3.71 -0.01 2.17 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.40 4.85 8.59 -40.82 -0.35 4.50 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 1.11 7.48 -51.93 -0.39 0.72 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.38 4.71 9.08 45.56 0.41 5.12 16 40 H 0.08 1.75 4.50 -51.93 -0.23 1.51 16 41 H 0.04 0.82 6.97 -51.93 -0.36 0.46 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -32.77 328.40 -7.56 -40.33 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.57 Total: 7.89 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.44 Total: 0.33 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.03 Total: -51.71 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.39 Total: -19.64 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.77 -7.56 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.657 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds