Wall clock time and date at job start Tue Mar 31 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00176 * 2 1 4 4 H 1.48500 * 109.46614 * 274.88531 * 3 2 1 5 5 H 1.48500 * 109.47063 * 34.88278 * 3 2 1 6 6 H 1.48500 * 109.47114 * 154.88735 * 3 2 1 7 7 C 1.38809 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99817 * 339.73372 * 7 2 1 9 9 N 1.36938 * 120.00357 * 159.73775 * 7 2 1 10 10 C 1.46925 * 120.63163 * 152.78620 * 9 7 2 11 11 C 1.53187 * 108.77727 * 126.41324 * 10 9 7 12 12 C 1.53046 * 109.31356 * 54.63178 * 11 10 9 13 13 H 1.09005 * 109.45504 * 58.63978 * 12 11 10 14 14 N 1.46498 * 109.46008 * 178.61425 * 12 11 10 15 15 C 1.34771 * 119.99998 * 274.99709 * 14 12 11 16 16 O 1.21611 * 120.00468 * 0.02562 * 15 14 12 17 17 C 1.47107 * 119.99765 * 180.02562 * 15 14 12 18 18 C 1.32991 * 119.99811 * 180.02562 * 17 15 14 19 19 C 1.51586 * 135.78276 * 180.02562 * 18 17 15 20 20 C 1.53840 * 86.75854 * 205.13313 * 19 18 17 21 21 C 1.51584 * 135.78513 * 359.97210 * 18 17 15 22 22 C 1.53043 * 109.53652 * 298.63859 * 12 11 10 23 23 H 1.09001 * 109.49656 * 301.40764 * 22 12 11 24 24 O 1.42906 * 109.49319 * 181.31662 * 22 12 11 25 25 C 1.46927 * 120.62746 * 332.80478 * 9 7 2 26 26 H 0.96997 * 120.00074 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.58931 * 6.62026 * 10 9 7 28 28 H 1.09002 * 109.58282 * 246.19971 * 10 9 7 29 29 H 1.09005 * 109.49929 * 294.68383 * 11 10 9 30 30 H 1.08999 * 109.49923 * 174.57865 * 11 10 9 31 31 H 0.97005 * 119.99954 * 95.00400 * 14 12 11 32 32 H 1.08000 * 120.00063 * 0.02562 * 17 15 14 33 33 H 1.08996 * 113.66316 * 90.66644 * 19 18 17 34 34 H 1.09000 * 113.66573 * 319.59837 * 19 18 17 35 35 H 1.08995 * 113.65680 * 89.68324 * 20 19 18 36 36 H 1.08997 * 113.65903 * 220.73014 * 20 19 18 37 37 H 1.08999 * 113.66762 * 40.39422 * 21 18 17 38 38 H 1.09003 * 113.66652 * 269.33435 * 21 18 17 39 39 H 0.96698 * 113.99545 * 180.02562 * 24 22 12 40 40 H 1.08996 * 109.58495 * 353.37599 * 25 9 7 41 41 H 1.09001 * 109.58226 * 113.65554 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3944 2.1059 -1.3950 5 1 1.5031 2.6207 0.8007 6 1 3.5956 1.4125 0.5942 7 6 2.0102 -1.2021 0.0005 8 1 1.5203 -2.1083 0.3249 9 7 3.3160 -1.2391 -0.4101 10 6 4.2333 -2.2657 0.1029 11 6 4.8800 -2.9867 -1.0840 12 6 5.5403 -1.9566 -2.0033 13 1 6.2864 -1.3943 -1.4418 14 7 6.1882 -2.6453 -3.1223 15 6 7.4378 -3.1303 -2.9824 16 8 8.0274 -2.9967 -1.9272 17 6 8.0885 -3.8215 -4.1062 18 6 9.3215 -4.3005 -3.9680 19 6 10.3030 -5.0451 -4.8512 20 6 10.9258 -5.5868 -3.5530 21 6 10.3547 -4.3378 -2.8595 22 6 4.4776 -0.9960 -2.5422 23 1 3.7177 -1.5604 -3.0828 24 8 5.0903 -0.0535 -3.4245 25 6 3.8264 -0.2525 -1.3719 26 1 -0.4850 0.8400 0.0004 27 1 3.6781 -2.9827 0.7075 28 1 5.0067 -1.7945 0.7096 29 1 4.1163 -3.5323 -1.6383 30 1 5.6337 -3.6845 -0.7191 31 1 5.7178 -2.7522 -3.9639 32 1 7.5651 -3.9398 -5.0434 33 1 10.9675 -4.3906 -5.4153 34 1 9.8396 -5.8146 -5.4685 35 1 10.4795 -6.5203 -3.2102 36 1 12.0152 -5.6177 -3.5702 37 1 9.9327 -4.5383 -1.8747 38 1 11.0336 -3.4851 -2.8653 39 1 4.4742 0.5880 -3.8039 40 1 3.0026 0.3587 -1.7403 41 1 4.5647 0.3845 -0.8847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090182489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:50 Heat of formation + Delta-G solvation = -45.821904 kcal Electronic energy + Delta-G solvation = -22273.649687 eV Core-core repulsion = 18961.306969 eV Total energy + Delta-G solvation = -3312.342718 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17780 -39.91375 -38.90190 -37.05745 -35.80544 -34.11128 -32.40787 -31.31624 -30.56796 -27.05097 -26.70211 -24.89357 -24.13434 -23.19161 -21.61685 -21.36796 -19.42853 -18.78133 -18.32323 -17.96489 -17.59333 -16.73124 -16.41268 -16.14550 -15.82425 -15.54789 -15.43771 -15.05252 -14.91165 -14.63117 -14.22980 -14.00792 -13.70480 -13.33979 -13.10609 -12.87707 -12.72510 -12.60181 -12.50407 -12.36738 -12.03774 -11.86732 -11.73832 -11.53459 -11.39580 -11.12652 -10.83824 -10.60132 -10.27431 -9.90259 -9.04662 -8.20541 -5.54709 0.41107 1.24283 1.40438 1.48359 2.17578 2.35153 2.36230 2.86508 3.11582 3.31023 3.43776 3.58387 3.75657 3.85080 3.98525 4.04781 4.18778 4.23162 4.28942 4.32690 4.54590 4.62867 4.66279 4.75476 4.76329 4.85705 4.87853 4.89878 4.96956 4.98719 5.05996 5.24967 5.30661 5.36987 5.49193 5.68451 5.79810 6.08787 6.64747 6.70173 6.85266 7.31703 7.53679 7.93692 8.98797 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039066 B = 0.003746 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.563784 B = 7472.252302 C = 7713.251255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.029 4.029 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.310 1.310 6 H -0.269 1.269 7 C -0.252 4.252 8 H 0.060 0.940 9 N -0.614 5.614 10 C 0.144 3.856 11 C -0.125 4.125 12 C 0.169 3.831 13 H 0.063 0.937 14 N -0.703 5.703 15 C 0.542 3.458 16 O -0.588 6.588 17 C -0.211 4.211 18 C -0.070 4.070 19 C -0.094 4.094 20 C -0.133 4.133 21 C -0.121 4.121 22 C 0.097 3.903 23 H 0.071 0.929 24 O -0.570 6.570 25 C 0.098 3.902 26 H 0.264 0.736 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.413 0.587 32 H 0.161 0.839 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.394 0.606 40 H 0.065 0.935 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.350 -8.819 -13.471 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.224 4.224 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.239 1.239 6 H -0.194 1.194 7 C -0.381 4.381 8 H 0.078 0.922 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.166 4.166 12 C 0.063 3.937 13 H 0.081 0.919 14 N -0.353 5.353 15 C 0.332 3.668 16 O -0.470 6.470 17 C -0.232 4.232 18 C -0.072 4.072 19 C -0.131 4.131 20 C -0.170 4.170 21 C -0.158 4.158 22 C 0.036 3.964 23 H 0.089 0.911 24 O -0.376 6.376 25 C -0.028 4.028 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.249 0.751 32 H 0.178 0.822 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.244 0.756 40 H 0.083 0.917 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 20.150 -8.977 -12.577 25.393 hybrid contribution -1.155 1.411 0.125 1.828 sum 18.995 -7.565 -12.452 23.940 Atomic orbital electron populations 1.69938 1.07224 1.27343 1.55197 1.25851 0.95801 1.00634 1.00138 0.86017 0.78516 0.80626 0.77926 1.19317 1.23863 1.19432 1.18889 0.86022 0.93899 1.39278 0.92209 1.44413 1.07863 1.33879 1.47788 1.21083 0.91946 0.90734 0.94322 1.22221 0.99612 0.97660 0.97061 1.20635 0.93288 0.91948 0.87824 0.91854 1.45747 1.15669 1.57475 1.16394 1.19041 0.81029 0.78333 0.88355 1.90740 1.65255 1.60107 1.30905 1.21723 0.97118 1.05229 0.99082 1.24076 0.93416 0.90312 0.99358 1.22444 0.95303 0.98836 0.96495 1.22827 1.01857 0.96720 0.95572 1.22433 0.96399 0.99540 0.97382 1.22400 0.93564 0.90023 0.90391 0.91065 1.86436 1.40337 1.47290 1.63585 1.22044 0.97160 0.92630 0.90961 0.92734 0.91262 0.95274 0.90992 0.90794 0.75113 0.82205 0.86394 0.88517 0.89708 0.88741 0.92211 0.88353 0.75638 0.91656 0.95103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.37 13.97 21.65 0.30 -58.07 16 2 C -0.03 -1.65 5.24 84.86 0.44 -1.21 16 3 Si 0.94 45.67 24.35 68.60 1.67 47.34 16 4 H -0.27 -11.84 6.70 99.48 0.67 -11.17 16 5 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 6 H -0.27 -12.99 6.45 99.48 0.64 -12.34 16 7 C -0.25 -13.97 10.04 84.03 0.84 -13.12 16 8 H 0.06 3.60 8.05 -2.91 -0.02 3.58 16 9 N -0.61 -28.59 2.77 -699.13 -1.94 -30.53 16 10 C 0.14 5.75 6.52 86.36 0.56 6.31 16 11 C -0.13 -4.24 5.65 30.67 0.17 -4.06 16 12 C 0.17 5.62 2.12 45.02 0.10 5.71 16 13 H 0.06 2.47 7.58 -2.38 -0.02 2.45 16 14 N -0.70 -19.32 4.91 -446.00 -2.19 -21.52 16 15 C 0.54 15.92 7.73 86.57 0.67 16.59 16 16 O -0.59 -21.85 14.77 -4.07 -0.06 -21.91 16 17 C -0.21 -4.47 10.03 23.43 0.23 -4.23 16 18 C -0.07 -1.34 6.87 -17.11 -0.12 -1.46 16 19 C -0.09 -1.05 8.05 30.41 0.24 -0.81 16 20 C -0.13 -1.66 8.11 31.11 0.25 -1.41 16 21 C -0.12 -2.42 7.06 30.42 0.21 -2.20 16 22 C 0.10 3.26 3.14 30.67 0.10 3.35 16 23 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 24 O -0.57 -16.72 13.16 -148.98 -1.96 -18.68 16 25 C 0.10 4.09 3.82 86.36 0.33 4.42 16 26 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 28 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.41 8.95 8.59 -92.70 -0.80 8.15 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.53 7.48 -2.39 -0.02 1.52 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.39 8.64 9.08 -74.06 -0.67 7.96 16 40 H 0.07 2.87 4.50 -2.39 -0.01 2.86 16 41 H 0.03 1.33 6.97 -2.39 -0.02 1.32 16 Total: -1.00 -72.00 328.40 -0.66 -72.66 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.53 Total: 22.82 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.04 Total: 7.89 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -3.83 Total: -110.11 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -2.02 Total: -40.59 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.34 kcal Total: -72.00 -0.66 -72.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090182489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.842 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds