Wall clock time and date at job start Tue Mar 31 2020 02:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00335 * 2 1 4 4 H 1.48506 * 109.47138 * 239.99770 * 3 2 1 5 5 H 1.48497 * 109.47408 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47174 * 120.00368 * 3 2 1 7 7 C 1.37878 * 119.99163 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99703 * 175.13902 * 7 2 1 9 9 C 1.50694 * 120.00569 * 355.42361 * 7 2 1 10 10 C 1.53005 * 115.55017 * 274.92361 * 9 7 2 11 11 N 1.46497 * 109.46780 * 294.81935 * 10 9 7 12 12 C 1.34782 * 119.99894 * 184.77988 * 11 10 9 13 13 O 1.21347 * 120.00121 * 5.03010 * 12 11 10 14 14 C 1.49453 * 120.00141 * 185.03768 * 12 11 10 15 15 O 1.21345 * 119.99840 * 5.08430 * 14 12 11 16 16 N 1.34768 * 120.00060 * 185.08842 * 14 12 11 17 17 C 1.46505 * 120.00082 * 179.97438 * 16 14 12 18 18 C 1.52999 * 109.46869 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.47037 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.49838 * 243.74929 * 19 18 17 21 21 C 1.52989 * 117.50136 * 175.08842 * 19 18 17 22 22 C 1.53002 * 117.50254 * 129.25219 * 9 7 2 23 23 C 1.53002 * 117.50119 * 60.59111 * 9 7 2 24 24 H 0.97009 * 119.99393 * 4.99881 * 1 2 3 25 25 H 1.09003 * 109.46813 * 54.80918 * 10 9 7 26 26 H 1.08993 * 109.47289 * 174.81299 * 10 9 7 27 27 H 0.97004 * 120.00703 * 4.77491 * 11 10 9 28 28 H 0.97003 * 119.99911 * 359.97438 * 16 14 12 29 29 H 1.08996 * 109.46741 * 299.99780 * 17 16 14 30 30 H 1.08999 * 109.46713 * 59.99706 * 17 16 14 31 31 H 1.08996 * 109.47467 * 299.99589 * 18 17 16 32 32 H 1.08999 * 109.47486 * 60.00433 * 18 17 16 33 33 H 1.09008 * 115.54722 * 29.41438 * 19 18 17 34 34 H 1.09000 * 117.50278 * 359.97438 * 20 19 18 35 35 H 1.09007 * 117.49771 * 145.01455 * 20 19 18 36 36 H 1.09007 * 117.49979 * 214.97543 * 21 19 18 37 37 H 1.08999 * 117.50530 * 359.97438 * 21 19 18 38 38 H 1.08995 * 117.49715 * 359.97438 * 22 9 7 39 39 H 1.09003 * 117.49834 * 145.01894 * 22 9 7 40 40 H 1.09005 * 117.49794 * 214.98555 * 23 9 7 41 41 H 1.08999 * 117.49412 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0043 -1.1942 0.0005 8 1 3.0815 -1.1960 -0.0787 9 6 1.2544 -2.4970 0.1052 10 6 0.9186 -2.9528 1.5267 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7588 3.4964 13 8 1.0358 -4.0622 3.9830 14 6 3.3640 -3.9532 4.2782 15 8 4.4228 -3.5653 3.8298 16 7 3.3233 -4.5594 5.4812 17 6 4.5573 -4.7504 6.2473 18 6 4.2349 -5.4569 7.5656 19 6 5.5236 -5.6559 8.3661 20 6 5.9729 -7.0934 8.6357 21 6 5.3978 -6.2448 9.7725 22 6 1.5726 -3.5804 -0.9273 23 6 0.2449 -2.8218 -0.9977 24 1 -0.4850 0.8370 -0.0732 25 1 0.3750 -2.1616 2.0430 26 1 0.3012 -3.8500 1.4843 27 1 3.0162 -3.0722 1.8340 28 1 2.4769 -4.8691 5.8398 29 1 5.2532 -5.3586 5.6695 30 1 5.0091 -3.7807 6.4562 31 1 3.5392 -4.8484 8.1433 32 1 3.7829 -6.4266 7.3571 33 1 6.2998 -4.9086 8.2008 34 1 5.3502 -7.8973 8.2432 35 1 7.0447 -7.2917 8.6483 36 1 6.0915 -5.8853 10.5326 37 1 4.3970 -6.4901 10.1278 38 1 2.3241 -3.3505 -1.6826 39 1 1.5424 -4.6178 -0.5940 40 1 -0.6582 -3.3604 -0.7106 41 1 0.1230 -2.0928 -1.7988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117421348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:02 Heat of formation + Delta-G solvation = -34.324656 kcal Electronic energy + Delta-G solvation = -21195.377224 eV Core-core repulsion = 17883.533064 eV Total energy + Delta-G solvation = -3311.844160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24995 -38.43635 -37.83703 -36.71496 -35.16592 -33.34112 -31.97063 -30.56978 -27.11565 -25.52886 -24.49039 -22.75517 -22.26927 -21.18235 -21.02139 -19.79643 -19.46272 -18.03776 -16.57908 -16.24593 -15.96704 -15.73456 -15.32209 -14.88440 -14.60432 -14.58354 -14.18785 -13.90529 -13.43828 -13.16412 -12.68527 -12.34236 -12.06587 -11.88045 -11.83418 -11.72350 -11.62181 -11.28805 -10.98291 -10.94589 -10.65058 -10.54140 -10.28282 -10.24996 -9.62482 -9.23065 -9.22451 -9.08515 -8.52764 -8.39141 -8.18185 -6.08656 -4.18410 1.79261 2.67605 3.28981 3.33942 3.37322 3.41998 3.60449 4.00838 4.32385 4.36250 4.49988 4.55373 4.80551 4.93588 4.99136 5.18085 5.18966 5.26540 5.29227 5.34478 5.54997 5.65286 5.72935 5.77542 5.93239 5.96016 6.24609 6.28607 6.40017 6.47677 6.66797 6.75073 6.99440 7.08443 7.22707 7.33159 7.50075 7.81108 7.86193 8.15339 8.31679 8.52336 8.83633 9.49267 10.98386 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024985 B = 0.003162 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.417711 B = 8851.826805 C = 9411.021535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.021 3.979 10 C 0.159 3.841 11 N -0.666 5.666 12 C 0.495 3.505 13 O -0.542 6.542 14 C 0.508 3.492 15 O -0.519 6.519 16 N -0.709 5.709 17 C 0.121 3.879 18 C -0.102 4.102 19 C -0.151 4.151 20 C -0.180 4.180 21 C -0.180 4.180 22 C -0.210 4.210 23 C -0.139 4.139 24 H 0.262 0.738 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.414 0.586 28 H 0.412 0.588 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 -11.439 14.311 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.020 3.980 10 C 0.037 3.963 11 N -0.316 5.316 12 C 0.274 3.726 13 O -0.421 6.421 14 C 0.289 3.711 15 O -0.393 6.393 16 N -0.363 5.363 17 C -0.003 4.003 18 C -0.140 4.140 19 C -0.169 4.169 20 C -0.217 4.217 21 C -0.217 4.217 22 C -0.247 4.247 23 C -0.178 4.178 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.250 0.750 28 H 0.248 0.752 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.562 -11.200 14.363 19.721 hybrid contribution 0.415 0.929 -0.022 1.017 sum 7.977 -10.272 14.341 19.359 Atomic orbital electron populations 1.69982 1.05875 1.27042 1.48297 1.24988 0.94851 0.99030 0.94205 0.86668 0.79659 0.82963 0.78816 1.20210 1.21276 1.20014 1.20352 0.92780 0.88512 1.52272 0.92040 1.19025 0.99734 0.93560 0.85651 1.21216 0.83409 0.98391 0.93329 1.45895 1.12683 1.59319 1.13659 1.19937 0.88741 0.80369 0.83507 1.90707 1.30309 1.51223 1.69866 1.20485 0.89903 0.78508 0.82238 1.90757 1.31297 1.48055 1.69227 1.45749 1.11785 1.59801 1.18996 1.21408 0.86477 1.01002 0.91392 1.21383 0.96556 1.01327 0.94693 1.22172 0.99408 0.97253 0.98105 1.23079 1.01479 0.93973 1.03191 1.22985 1.02669 1.04461 0.91566 1.23035 1.00739 0.95527 1.05416 1.22477 0.90762 1.01267 1.03248 0.92791 0.90796 0.93390 0.74997 0.75249 0.90925 0.90992 0.90570 0.90876 0.87329 0.88665 0.88784 0.88758 0.88701 0.90211 0.91641 0.91731 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.14 12.65 55.43 0.70 -23.44 16 2 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.50 -13.06 8.59 -34.44 -0.30 -13.35 16 8 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 9 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 10 C 0.16 3.55 5.53 -4.04 -0.02 3.52 16 11 N -0.67 -13.44 5.46 -60.73 -0.33 -13.77 16 12 C 0.50 9.34 7.88 -11.58 -0.09 9.25 16 13 O -0.54 -10.99 16.47 5.50 0.09 -10.90 16 14 C 0.51 8.39 7.89 -11.59 -0.09 8.30 16 15 O -0.52 -9.69 16.50 5.50 0.09 -9.60 16 16 N -0.71 -8.88 5.55 -60.73 -0.34 -9.22 16 17 C 0.12 1.21 5.63 -4.04 -0.02 1.19 16 18 C -0.10 -0.76 5.61 -26.73 -0.15 -0.91 16 19 C -0.15 -1.05 5.73 -90.62 -0.52 -1.57 16 20 C -0.18 -1.16 10.18 -26.70 -0.27 -1.43 16 21 C -0.18 -1.12 10.25 -26.70 -0.27 -1.39 16 22 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 23 C -0.14 -3.16 9.14 -26.69 -0.24 -3.40 16 24 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 25 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 26 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 27 H 0.41 8.27 7.84 -40.82 -0.32 7.95 16 28 H 0.41 4.60 7.95 -40.82 -0.32 4.28 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 33 H 0.11 0.74 8.08 -51.92 -0.42 0.33 16 34 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -29.31 354.32 -8.55 -37.86 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.50 Total: 10.20 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.57 Total: -2.31 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.03 Total: -46.42 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.18 Total: -20.49 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.31 -8.55 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117421348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.531 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds