Wall clock time and date at job start Tue Mar 31 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00335 * 2 1 4 4 H 1.48506 * 109.47138 * 239.99770 * 3 2 1 5 5 H 1.48497 * 109.47408 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47174 * 120.00368 * 3 2 1 7 7 C 1.37878 * 119.99163 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99703 * 175.13902 * 7 2 1 9 9 C 1.50694 * 120.00569 * 355.42361 * 7 2 1 10 10 C 1.53005 * 115.55017 * 274.92361 * 9 7 2 11 11 N 1.46497 * 109.46780 * 294.81935 * 10 9 7 12 12 C 1.34782 * 119.99894 * 184.77988 * 11 10 9 13 13 O 1.21347 * 120.00121 * 5.03010 * 12 11 10 14 14 C 1.49453 * 120.00141 * 185.03768 * 12 11 10 15 15 O 1.21345 * 119.99840 * 5.08430 * 14 12 11 16 16 N 1.34768 * 120.00060 * 185.08842 * 14 12 11 17 17 C 1.46505 * 120.00082 * 179.97438 * 16 14 12 18 18 C 1.52999 * 109.46869 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.47037 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.49838 * 243.74929 * 19 18 17 21 21 C 1.52989 * 117.50136 * 175.08842 * 19 18 17 22 22 C 1.53002 * 117.50254 * 129.25219 * 9 7 2 23 23 C 1.53002 * 117.50119 * 60.59111 * 9 7 2 24 24 H 0.97009 * 119.99393 * 4.99881 * 1 2 3 25 25 H 1.09003 * 109.46813 * 54.80918 * 10 9 7 26 26 H 1.08993 * 109.47289 * 174.81299 * 10 9 7 27 27 H 0.97004 * 120.00703 * 4.77491 * 11 10 9 28 28 H 0.97003 * 119.99911 * 359.97438 * 16 14 12 29 29 H 1.08996 * 109.46741 * 299.99780 * 17 16 14 30 30 H 1.08999 * 109.46713 * 59.99706 * 17 16 14 31 31 H 1.08996 * 109.47467 * 299.99589 * 18 17 16 32 32 H 1.08999 * 109.47486 * 60.00433 * 18 17 16 33 33 H 1.09008 * 115.54722 * 29.41438 * 19 18 17 34 34 H 1.09000 * 117.50278 * 359.97438 * 20 19 18 35 35 H 1.09007 * 117.49771 * 145.01455 * 20 19 18 36 36 H 1.09007 * 117.49979 * 214.97543 * 21 19 18 37 37 H 1.08999 * 117.50530 * 359.97438 * 21 19 18 38 38 H 1.08995 * 117.49715 * 359.97438 * 22 9 7 39 39 H 1.09003 * 117.49834 * 145.01894 * 22 9 7 40 40 H 1.09005 * 117.49794 * 214.98555 * 23 9 7 41 41 H 1.08999 * 117.49412 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0043 -1.1942 0.0005 8 1 3.0815 -1.1960 -0.0787 9 6 1.2544 -2.4970 0.1052 10 6 0.9186 -2.9528 1.5267 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7588 3.4964 13 8 1.0358 -4.0622 3.9830 14 6 3.3640 -3.9532 4.2782 15 8 4.4228 -3.5653 3.8298 16 7 3.3233 -4.5594 5.4812 17 6 4.5573 -4.7504 6.2473 18 6 4.2349 -5.4569 7.5656 19 6 5.5236 -5.6559 8.3661 20 6 5.9729 -7.0934 8.6357 21 6 5.3978 -6.2448 9.7725 22 6 1.5726 -3.5804 -0.9273 23 6 0.2449 -2.8218 -0.9977 24 1 -0.4850 0.8370 -0.0732 25 1 0.3750 -2.1616 2.0430 26 1 0.3012 -3.8500 1.4843 27 1 3.0162 -3.0722 1.8340 28 1 2.4769 -4.8691 5.8398 29 1 5.2532 -5.3586 5.6695 30 1 5.0091 -3.7807 6.4562 31 1 3.5392 -4.8484 8.1433 32 1 3.7829 -6.4266 7.3571 33 1 6.2998 -4.9086 8.2008 34 1 5.3502 -7.8973 8.2432 35 1 7.0447 -7.2917 8.6483 36 1 6.0915 -5.8853 10.5326 37 1 4.3970 -6.4901 10.1278 38 1 2.3241 -3.3505 -1.6826 39 1 1.5424 -4.6178 -0.5940 40 1 -0.6582 -3.3604 -0.7106 41 1 0.1230 -2.0928 -1.7988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117421348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:01 Heat of formation + Delta-G solvation = -52.971104 kcal Electronic energy + Delta-G solvation = -21196.185795 eV Core-core repulsion = 17883.533064 eV Total energy + Delta-G solvation = -3312.652731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64782 -39.76808 -38.58792 -38.45507 -36.26532 -34.93419 -33.96526 -31.44248 -28.75390 -27.43760 -25.69059 -23.51991 -23.14537 -22.87834 -21.81714 -21.39906 -20.86102 -19.50982 -18.09486 -17.82178 -17.16538 -16.67722 -16.63474 -16.46949 -16.13725 -15.79499 -15.47326 -15.09297 -14.68919 -14.60591 -14.37938 -13.68491 -13.49499 -13.07591 -12.96207 -12.82950 -12.81440 -12.74451 -12.39494 -12.32842 -12.25088 -12.01538 -11.43528 -11.18468 -10.97353 -10.81954 -10.73101 -10.45695 -10.31639 -10.12161 -9.96319 -8.11031 -6.24800 0.37211 1.37793 1.42067 1.44553 1.50424 2.16580 2.41540 2.70329 2.92939 3.16446 3.42488 3.59960 3.69669 3.96133 4.03562 4.19690 4.22853 4.31067 4.51365 4.53399 4.62432 4.64826 4.68599 4.83800 4.91415 4.93111 5.02112 5.06724 5.08888 5.19898 5.28423 5.30318 5.34592 5.38757 5.52681 5.68357 5.76729 5.99814 6.35466 6.46005 6.77459 6.82581 6.99611 7.44893 8.95394 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024985 B = 0.003162 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.417711 B = 8851.826805 C = 9411.021535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.028 3.972 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.058 0.942 9 C -0.003 4.003 10 C 0.174 3.826 11 N -0.670 5.670 12 C 0.496 3.504 13 O -0.556 6.556 14 C 0.513 3.487 15 O -0.543 6.543 16 N -0.688 5.688 17 C 0.119 3.881 18 C -0.092 4.092 19 C -0.160 4.160 20 C -0.182 4.182 21 C -0.177 4.177 22 C -0.181 4.181 23 C -0.145 4.145 24 H 0.261 0.739 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.415 0.585 28 H 0.420 0.580 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 -12.497 15.394 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.173 4.173 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.076 0.924 9 C -0.004 4.004 10 C 0.051 3.949 11 N -0.319 5.319 12 C 0.276 3.724 13 O -0.436 6.436 14 C 0.293 3.707 15 O -0.420 6.420 16 N -0.342 5.342 17 C -0.003 4.003 18 C -0.130 4.130 19 C -0.179 4.179 20 C -0.219 4.219 21 C -0.214 4.214 22 C -0.218 4.218 23 C -0.184 4.184 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.251 0.749 28 H 0.257 0.743 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.540 -12.285 15.480 21.529 hybrid contribution 0.124 1.196 -0.300 1.240 sum 8.665 -11.089 15.180 20.700 Atomic orbital electron populations 1.70082 1.06946 1.27446 1.49571 1.25636 0.95539 1.01811 0.94308 0.85802 0.78507 0.79728 0.78736 1.19574 1.21230 1.20127 1.20636 0.92829 0.89847 1.51451 0.92427 1.19067 1.00715 0.93962 0.86642 1.20836 0.84074 0.97479 0.92502 1.45811 1.11925 1.59901 1.14298 1.20362 0.89570 0.79366 0.83071 1.90693 1.31224 1.51646 1.70036 1.20005 0.88393 0.79199 0.83131 1.90754 1.31529 1.49681 1.70067 1.45752 1.13253 1.57657 1.17520 1.21602 0.85221 1.01237 0.92260 1.21314 0.97054 1.01437 0.93166 1.22162 0.99190 0.97726 0.98784 1.23156 1.01892 0.93681 1.03195 1.23059 1.03101 1.03886 0.91330 1.23024 0.99177 0.96003 1.03601 1.22400 0.92053 1.01529 1.02380 0.93036 0.94153 0.92568 0.74882 0.74258 0.90931 0.91299 0.89996 0.90041 0.87421 0.88385 0.88371 0.88163 0.88239 0.89944 0.89151 0.90596 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.47 12.65 21.45 0.27 -50.20 16 2 C 0.03 1.51 5.43 84.66 0.46 1.97 16 3 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.51 -26.59 8.59 25.60 0.22 -26.37 16 8 H 0.06 2.98 7.82 -2.91 -0.02 2.95 16 9 C 0.00 -0.15 1.47 -52.93 -0.08 -0.22 16 10 C 0.17 7.78 5.53 86.38 0.48 8.25 16 11 N -0.67 -26.78 5.46 -464.41 -2.54 -29.32 16 12 C 0.50 18.37 7.88 87.27 0.69 19.06 16 13 O -0.56 -22.11 16.47 -3.24 -0.05 -22.17 16 14 C 0.51 16.40 7.89 87.27 0.69 17.09 16 15 O -0.54 -19.83 16.50 -3.23 -0.05 -19.88 16 16 N -0.69 -16.10 5.55 -464.42 -2.58 -18.67 16 17 C 0.12 2.19 5.63 86.38 0.49 2.67 16 18 C -0.09 -1.16 5.61 30.60 0.17 -0.99 16 19 C -0.16 -1.91 5.73 -10.80 -0.06 -1.97 16 20 C -0.18 -1.98 10.18 30.62 0.31 -1.67 16 21 C -0.18 -1.83 10.25 30.61 0.31 -1.52 16 22 C -0.18 -7.27 9.96 30.62 0.30 -6.96 16 23 C -0.15 -6.54 9.14 30.62 0.28 -6.26 16 24 H 0.26 14.05 8.32 -92.70 -0.77 13.28 16 25 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 27 H 0.41 16.45 7.84 -92.71 -0.73 15.72 16 28 H 0.42 8.56 7.95 -92.71 -0.74 7.83 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.92 7.88 -2.39 -0.02 0.90 16 33 H 0.11 1.30 8.08 -2.38 -0.02 1.29 16 34 H 0.10 1.00 8.03 -2.39 -0.02 0.99 16 35 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 41 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -61.69 354.32 0.91 -60.78 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.43 Total: 31.38 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 4.26 Total: 3.08 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -4.84 Total: -98.19 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -0.11 Total: -42.05 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -61.69 0.91 -60.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117421348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.807 kcal (2) G-P(sol) polarization free energy of solvation -61.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds