Wall clock time and date at job start Tue Mar 31 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86791 * 120.00070 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47487 * 300.00110 * 3 2 1 6 6 H 1.48507 * 109.47332 * 59.99770 * 3 2 1 7 7 C 1.37874 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.53040 * 109.46331 * 179.97438 * 9 7 2 11 11 C 1.53197 * 109.31091 * 178.62515 * 10 9 7 12 12 N 1.46923 * 108.89116 * 54.56637 * 11 10 9 13 13 C 1.34782 * 120.62684 * 126.46037 * 12 11 10 14 14 O 1.21342 * 120.00136 * 351.43686 * 13 12 11 15 15 C 1.49457 * 119.99484 * 171.44241 * 13 12 11 16 16 O 1.21347 * 120.00275 * 353.23309 * 15 13 12 17 17 N 1.34777 * 119.99505 * 173.23616 * 15 13 12 18 18 C 1.46501 * 119.99564 * 180.02562 * 17 15 13 19 19 C 1.53783 * 113.61252 * 254.13277 * 18 17 15 20 20 C 1.53952 * 87.01990 * 220.05105 * 19 18 17 21 21 C 1.53777 * 87.11325 * 25.36443 * 20 19 18 22 22 C 1.46960 * 118.71787 * 306.63534 * 12 11 10 23 23 C 1.53045 * 109.45141 * 59.93203 * 9 7 2 24 24 H 0.96996 * 119.99667 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.45934 * 299.97251 * 9 7 2 26 26 H 1.08998 * 109.49465 * 58.67716 * 10 9 7 27 27 H 1.08994 * 109.52457 * 298.59189 * 10 9 7 28 28 H 1.09007 * 109.58045 * 174.42450 * 11 10 9 29 29 H 1.08996 * 109.58639 * 294.70415 * 11 10 9 30 30 H 0.96993 * 120.00386 * 359.97438 * 17 15 13 31 31 H 1.08999 * 112.85233 * 25.32927 * 18 17 15 32 32 H 1.09001 * 113.61301 * 334.56715 * 19 18 17 33 33 H 1.09001 * 113.61254 * 105.47406 * 19 18 17 34 34 H 1.09006 * 113.53904 * 270.80935 * 20 19 18 35 35 H 1.08997 * 113.66870 * 139.93544 * 20 19 18 36 36 H 1.09003 * 113.61674 * 220.09423 * 21 20 19 37 37 H 1.09001 * 113.69563 * 89.19911 * 21 20 19 38 38 H 1.08999 * 109.46492 * 293.57899 * 22 12 11 39 39 H 1.09003 * 109.71205 * 173.28591 * 22 12 11 40 40 H 1.08996 * 109.49836 * 301.33908 * 23 9 7 41 41 H 1.09004 * 109.49264 * 61.42693 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4766 -4.9867 0.0352 12 7 0.5203 -5.0107 -1.0799 13 6 0.5084 -6.0381 -1.9522 14 8 1.3869 -6.8744 -1.9167 15 6 -0.5868 -6.1472 -2.9633 16 8 -1.5292 -5.3839 -2.9217 17 7 -0.5277 -7.0934 -3.9213 18 6 -1.6010 -7.2000 -4.9127 19 6 -2.5325 -8.4023 -4.6853 20 6 -2.5304 -8.5904 -6.2133 21 6 -1.1658 -7.8816 -6.2208 22 6 -0.4202 -3.8912 -1.2279 23 6 0.3706 -2.5793 -1.2487 24 1 -0.4849 0.8400 -0.0004 25 1 0.6245 -2.5567 0.8907 26 1 2.8881 -3.5915 0.8783 27 1 2.8561 -3.6196 -0.9015 28 1 2.1752 -5.8175 -0.0644 29 1 0.9391 -5.0724 0.9795 30 1 0.2258 -7.7033 -3.9547 31 1 -2.1309 -6.2598 -5.0656 32 1 -2.0619 -9.2229 -4.1438 33 1 -3.5065 -8.1293 -4.2794 34 1 -3.3158 -8.0312 -6.7218 35 1 -2.4823 -9.6336 -6.5257 36 1 -1.0381 -7.1888 -7.0526 37 1 -0.3200 -8.5584 -6.1001 38 1 -1.1144 -3.8865 -0.3876 39 1 -0.9752 -3.9980 -2.1600 40 1 -0.3218 -1.7377 -1.2604 41 1 0.9986 -2.5467 -2.1390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118743831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:40 Heat of formation + Delta-G solvation = -44.652824 kcal Electronic energy + Delta-G solvation = -22304.454489 eV Core-core repulsion = 18992.162466 eV Total energy + Delta-G solvation = -3312.292023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74980 -39.26205 -37.85020 -36.95497 -33.84250 -33.14429 -31.21207 -30.04839 -26.91665 -25.96471 -25.71995 -23.81364 -22.42192 -21.93898 -20.48704 -19.88108 -18.78443 -17.21521 -17.08011 -16.43708 -15.98096 -15.68360 -15.38528 -14.91415 -14.51959 -14.01465 -13.83678 -13.28259 -12.98351 -12.84280 -12.82145 -12.73741 -12.50357 -12.30113 -11.81465 -11.54041 -11.34252 -10.97448 -10.95603 -10.89390 -10.72751 -10.57336 -10.35937 -10.06664 -9.69226 -9.26170 -9.19767 -9.16458 -8.59111 -8.34289 -8.06495 -6.00115 -4.06593 1.63136 2.56329 3.28895 3.37294 3.40852 3.41675 3.79001 4.21236 4.32642 4.42926 4.54461 4.58619 4.62112 5.29424 5.33041 5.37699 5.39668 5.56789 5.64646 5.69085 5.71244 5.84241 5.89088 5.99357 6.09372 6.24337 6.25975 6.45492 6.61171 6.72064 6.79879 6.99646 7.15004 7.18089 7.32026 7.67586 7.78480 7.91352 7.96336 8.08434 8.27021 8.42720 8.96941 9.58328 11.05338 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029178 B = 0.003756 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.382797 B = 7453.740824 C = 7964.481119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.046 3.954 10 C -0.122 4.122 11 C 0.107 3.893 12 N -0.562 5.562 13 C 0.499 3.501 14 O -0.545 6.545 15 C 0.510 3.490 16 O -0.506 6.506 17 N -0.696 5.696 18 C 0.119 3.881 19 C -0.154 4.154 20 C -0.139 4.139 21 C -0.147 4.147 22 C 0.067 3.933 23 C -0.123 4.123 24 H 0.260 0.740 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.411 0.589 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 -15.627 -9.683 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.160 4.160 11 C -0.015 4.015 12 N -0.293 5.293 13 C 0.281 3.719 14 O -0.425 6.425 15 C 0.292 3.708 16 O -0.381 6.381 17 N -0.349 5.349 18 C 0.014 3.986 19 C -0.192 4.192 20 C -0.177 4.177 21 C -0.185 4.185 22 C -0.054 4.054 23 C -0.161 4.161 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.248 0.752 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.124 0.876 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.584 -15.349 -9.599 18.674 hybrid contribution 0.802 0.759 0.077 1.106 sum -3.782 -14.590 -9.521 17.828 Atomic orbital electron populations 1.69860 1.05825 1.26340 1.50862 1.24972 0.94874 0.99070 0.95131 0.86559 0.80140 0.83883 0.77542 1.19864 1.21068 1.21073 1.21229 0.92931 0.90566 1.50286 0.92675 1.18688 0.92678 0.91664 0.94268 1.22005 0.98919 0.93938 1.01153 1.21881 0.91742 1.00261 0.87611 1.48229 1.35137 1.19763 1.26190 1.19925 0.85980 0.83064 0.82939 1.90686 1.37649 1.42002 1.72160 1.20444 0.87138 0.80887 0.82295 1.90553 1.34551 1.40182 1.72857 1.45824 1.25454 1.34553 1.29037 1.22719 0.88767 0.99473 0.87632 1.23477 1.00593 0.98511 0.96661 1.22713 0.97326 1.01192 0.96420 1.23330 0.98196 0.99780 0.97185 1.23080 0.91487 0.85866 1.04926 1.22031 0.99989 0.94992 0.99120 0.93023 0.95395 0.91889 0.92842 0.90130 0.91523 0.75244 0.86380 0.89625 0.90742 0.89691 0.90788 0.90494 0.89423 0.92020 0.86116 0.87625 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 11.31 55.43 0.63 -24.31 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -13.85 8.56 -34.44 -0.29 -14.14 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 11 C 0.11 1.96 6.44 -3.71 -0.02 1.94 16 12 N -0.56 -10.66 2.98 -173.24 -0.52 -11.17 16 13 C 0.50 8.90 7.73 -11.58 -0.09 8.81 16 14 O -0.55 -10.18 15.93 5.50 0.09 -10.09 16 15 C 0.51 8.06 7.74 -11.58 -0.09 7.97 16 16 O -0.51 -8.92 12.81 5.50 0.07 -8.85 16 17 N -0.70 -8.37 5.35 -53.44 -0.29 -8.65 16 18 C 0.12 1.17 4.21 -67.11 -0.28 0.89 16 19 C -0.15 -1.27 7.89 -25.83 -0.20 -1.48 16 20 C -0.14 -0.90 8.09 -25.83 -0.21 -1.11 16 21 C -0.15 -1.06 7.83 -25.92 -0.20 -1.26 16 22 C 0.07 1.34 5.97 -3.69 -0.02 1.32 16 23 C -0.12 -2.87 5.15 -26.61 -0.14 -3.01 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.41 7.01 -51.92 -0.36 1.05 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.41 4.41 8.20 -40.82 -0.33 4.07 16 31 H 0.12 1.31 7.50 -51.93 -0.39 0.92 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.12 2.40 4.34 -54.68 -0.24 2.17 16 40 H 0.11 2.74 6.03 -51.93 -0.31 2.43 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -29.66 328.32 -8.32 -37.98 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.25 Total: 4.30 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.98 Total: -0.25 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.18 Total: -44.14 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.16 Total: -18.94 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.66 -8.32 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118743831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.673 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds