Wall clock time and date at job start Tue Mar 31 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86791 * 120.00070 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47487 * 300.00110 * 3 2 1 6 6 H 1.48507 * 109.47332 * 59.99770 * 3 2 1 7 7 C 1.37874 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.53040 * 109.46331 * 179.97438 * 9 7 2 11 11 C 1.53197 * 109.31091 * 178.62515 * 10 9 7 12 12 N 1.46923 * 108.89116 * 54.56637 * 11 10 9 13 13 C 1.34782 * 120.62684 * 126.46037 * 12 11 10 14 14 O 1.21342 * 120.00136 * 351.43686 * 13 12 11 15 15 C 1.49457 * 119.99484 * 171.44241 * 13 12 11 16 16 O 1.21347 * 120.00275 * 353.23309 * 15 13 12 17 17 N 1.34777 * 119.99505 * 173.23616 * 15 13 12 18 18 C 1.46501 * 119.99564 * 180.02562 * 17 15 13 19 19 C 1.53783 * 113.61252 * 254.13277 * 18 17 15 20 20 C 1.53952 * 87.01990 * 220.05105 * 19 18 17 21 21 C 1.53777 * 87.11325 * 25.36443 * 20 19 18 22 22 C 1.46960 * 118.71787 * 306.63534 * 12 11 10 23 23 C 1.53045 * 109.45141 * 59.93203 * 9 7 2 24 24 H 0.96996 * 119.99667 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.45934 * 299.97251 * 9 7 2 26 26 H 1.08998 * 109.49465 * 58.67716 * 10 9 7 27 27 H 1.08994 * 109.52457 * 298.59189 * 10 9 7 28 28 H 1.09007 * 109.58045 * 174.42450 * 11 10 9 29 29 H 1.08996 * 109.58639 * 294.70415 * 11 10 9 30 30 H 0.96993 * 120.00386 * 359.97438 * 17 15 13 31 31 H 1.08999 * 112.85233 * 25.32927 * 18 17 15 32 32 H 1.09001 * 113.61301 * 334.56715 * 19 18 17 33 33 H 1.09001 * 113.61254 * 105.47406 * 19 18 17 34 34 H 1.09006 * 113.53904 * 270.80935 * 20 19 18 35 35 H 1.08997 * 113.66870 * 139.93544 * 20 19 18 36 36 H 1.09003 * 113.61674 * 220.09423 * 21 20 19 37 37 H 1.09001 * 113.69563 * 89.19911 * 21 20 19 38 38 H 1.08999 * 109.46492 * 293.57899 * 22 12 11 39 39 H 1.09003 * 109.71205 * 173.28591 * 22 12 11 40 40 H 1.08996 * 109.49836 * 301.33908 * 23 9 7 41 41 H 1.09004 * 109.49264 * 61.42693 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4766 -4.9867 0.0352 12 7 0.5203 -5.0107 -1.0799 13 6 0.5084 -6.0381 -1.9522 14 8 1.3869 -6.8744 -1.9167 15 6 -0.5868 -6.1472 -2.9633 16 8 -1.5292 -5.3839 -2.9217 17 7 -0.5277 -7.0934 -3.9213 18 6 -1.6010 -7.2000 -4.9127 19 6 -2.5325 -8.4023 -4.6853 20 6 -2.5304 -8.5904 -6.2133 21 6 -1.1658 -7.8816 -6.2208 22 6 -0.4202 -3.8912 -1.2279 23 6 0.3706 -2.5793 -1.2487 24 1 -0.4849 0.8400 -0.0004 25 1 0.6245 -2.5567 0.8907 26 1 2.8881 -3.5915 0.8783 27 1 2.8561 -3.6196 -0.9015 28 1 2.1752 -5.8175 -0.0644 29 1 0.9391 -5.0724 0.9795 30 1 0.2258 -7.7033 -3.9547 31 1 -2.1309 -6.2598 -5.0656 32 1 -2.0619 -9.2229 -4.1438 33 1 -3.5065 -8.1293 -4.2794 34 1 -3.3158 -8.0312 -6.7218 35 1 -2.4823 -9.6336 -6.5257 36 1 -1.0381 -7.1888 -7.0526 37 1 -0.3200 -8.5584 -6.1001 38 1 -1.1144 -3.8865 -0.3876 39 1 -0.9752 -3.9980 -2.1600 40 1 -0.3218 -1.7377 -1.2604 41 1 0.9986 -2.5467 -2.1390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118743831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:40 Heat of formation + Delta-G solvation = -63.216150 kcal Electronic energy + Delta-G solvation = -22305.259455 eV Core-core repulsion = 18992.162466 eV Total energy + Delta-G solvation = -3313.096989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.04299 -40.34611 -38.95597 -38.57614 -35.49098 -34.42896 -33.02935 -31.76802 -28.52394 -27.06694 -26.56472 -25.18090 -24.14029 -23.37713 -21.71301 -21.02918 -20.16284 -18.66604 -18.34072 -18.19084 -17.35428 -16.97517 -16.51413 -16.24613 -16.04500 -15.41572 -15.25968 -14.85109 -14.64794 -14.44941 -13.97803 -13.90960 -13.44623 -13.36607 -13.30680 -13.15947 -12.84250 -12.50449 -12.35498 -12.23567 -12.15650 -11.95516 -11.60227 -11.50955 -11.36592 -11.02507 -11.00686 -10.46490 -10.29674 -10.02043 -9.69512 -8.07881 -6.21863 0.29706 1.31492 1.40329 1.42945 1.53519 2.07086 2.43841 2.49351 3.18597 3.27567 3.56892 3.69556 3.95157 3.96165 4.09686 4.26449 4.29958 4.48745 4.54151 4.58525 4.76036 4.79548 4.82623 4.84460 4.94393 5.06139 5.08871 5.10971 5.13921 5.18348 5.27742 5.37421 5.43768 5.57145 5.62762 5.95735 6.03633 6.09712 6.27840 6.37812 6.68218 6.88385 6.92260 7.46079 8.95962 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029178 B = 0.003756 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.382797 B = 7453.740824 C = 7964.481119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.113 4.113 11 C 0.111 3.889 12 N -0.571 5.571 13 C 0.500 3.500 14 O -0.551 6.551 15 C 0.510 3.490 16 O -0.530 6.530 17 N -0.676 5.676 18 C 0.101 3.899 19 C -0.153 4.153 20 C -0.127 4.127 21 C -0.137 4.137 22 C 0.084 3.916 23 C -0.113 4.113 24 H 0.261 0.739 25 H 0.004 0.996 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.419 0.581 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.128 0.872 40 H 0.077 0.923 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 -17.086 -10.757 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.024 3.976 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.302 5.302 13 C 0.283 3.717 14 O -0.430 6.430 15 C 0.291 3.709 16 O -0.408 6.408 17 N -0.328 5.328 18 C -0.003 4.003 19 C -0.191 4.191 20 C -0.165 4.165 21 C -0.175 4.175 22 C -0.038 4.038 23 C -0.152 4.152 24 H 0.070 0.930 25 H 0.022 0.978 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.257 0.743 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.207 -16.857 -10.699 20.404 hybrid contribution 0.694 1.153 0.382 1.399 sum -3.513 -15.704 -10.317 19.116 Atomic orbital electron populations 1.69987 1.06995 1.27072 1.51291 1.25709 0.95696 1.02237 0.94877 0.85592 0.79045 0.79968 0.77543 1.19374 1.20759 1.20633 1.21577 0.92989 0.92106 1.50437 0.93104 1.18655 0.93109 0.92354 0.93479 1.21848 0.98218 0.93834 1.01174 1.21851 0.91873 0.99130 0.88176 1.48210 1.35210 1.19937 1.26888 1.20283 0.86267 0.82397 0.82792 1.90676 1.38058 1.42024 1.72290 1.20129 0.86308 0.81700 0.82739 1.90530 1.35184 1.41490 1.73591 1.45853 1.26005 1.33022 1.27925 1.23058 0.88820 0.99785 0.88599 1.23487 0.99730 0.97592 0.98334 1.22694 0.96907 1.02206 0.94713 1.23338 0.99116 0.99678 0.95385 1.22801 0.90999 0.84708 1.05245 1.21805 0.99289 0.95949 0.98123 0.92981 0.97802 0.90927 0.93671 0.88732 0.90316 0.74283 0.87834 0.89167 0.91395 0.89091 0.89151 0.89922 0.88208 0.92286 0.85508 0.90490 0.95678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.24 11.31 21.45 0.24 -52.00 16 2 C 0.01 0.75 5.30 84.65 0.45 1.19 16 3 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.53 -29.27 8.56 25.60 0.22 -29.05 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.04 2.11 2.06 -11.51 -0.02 2.09 16 10 C -0.11 -4.63 5.30 30.67 0.16 -4.47 16 11 C 0.11 3.97 6.44 86.36 0.56 4.53 16 12 N -0.57 -21.33 2.98 -820.38 -2.44 -23.77 16 13 C 0.50 17.29 7.73 87.27 0.67 17.96 16 14 O -0.55 -19.60 15.93 -3.22 -0.05 -19.66 16 15 C 0.51 15.66 7.74 87.27 0.68 16.34 16 16 O -0.53 -18.56 12.81 -3.24 -0.04 -18.60 16 17 N -0.68 -15.22 5.35 -441.35 -2.36 -17.59 16 18 C 0.10 1.83 4.21 45.52 0.19 2.02 16 19 C -0.15 -2.24 7.89 31.18 0.25 -1.99 16 20 C -0.13 -1.29 8.09 31.18 0.25 -1.04 16 21 C -0.14 -1.61 7.83 31.12 0.24 -1.37 16 22 C 0.08 3.40 5.97 86.36 0.52 3.91 16 23 C -0.11 -5.42 5.15 30.67 0.16 -5.26 16 24 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 26 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 3.14 7.01 -2.38 -0.02 3.13 16 29 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.42 8.11 8.20 -92.71 -0.76 7.35 16 31 H 0.10 2.23 7.50 -2.39 -0.02 2.21 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 0.96 8.11 -2.39 -0.02 0.95 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.13 5.10 4.34 -45.99 -0.20 4.90 16 40 H 0.08 4.15 6.03 -2.39 -0.01 4.14 16 41 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -63.49 328.32 1.78 -61.72 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.09 Total: 19.37 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.32 Total: 4.87 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -4.56 Total: -93.35 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.09 Total: -38.26 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -63.49 1.78 -61.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118743831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.501 kcal (2) G-P(sol) polarization free energy of solvation -63.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds