Wall clock time and date at job start Tue Mar 31 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 112.84606 * 115.36370 * 3 2 1 5 5 C 1.52996 * 109.47543 * 50.32660 * 4 3 2 6 6 H 1.08995 * 109.47356 * 305.00467 * 5 4 3 7 7 O 1.42904 * 109.46741 * 65.00359 * 5 4 3 8 8 C 1.53004 * 109.47452 * 184.99965 * 5 4 3 9 9 N 1.46895 * 109.47211 * 180.02562 * 8 5 4 10 10 C 1.47961 * 111.00270 * 170.00151 * 9 8 5 11 11 C 1.53934 * 86.18427 * 222.41862 * 10 9 8 12 12 O 1.42895 * 113.73076 * 269.25870 * 11 10 9 13 13 C 1.50696 * 113.73266 * 138.07361 * 11 10 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47958 * 110.99863 * 70.64272 * 9 8 5 22 22 C 1.53776 * 113.61458 * 246.55082 * 3 2 1 23 23 C 1.53962 * 87.01758 * 89.23431 * 22 3 2 24 24 C 1.53773 * 113.61849 * 344.16321 * 3 2 1 25 25 H 1.09004 * 109.47033 * 290.32905 * 4 3 2 26 26 H 1.09003 * 109.47361 * 170.33182 * 4 3 2 27 27 H 0.96696 * 114.00529 * 60.00268 * 7 5 4 28 28 H 1.09005 * 109.46718 * 60.00249 * 8 5 4 29 29 H 1.08999 * 109.46778 * 300.00702 * 8 5 4 30 30 H 1.08996 * 113.76309 * 108.09300 * 10 9 8 31 31 H 1.09008 * 113.85816 * 336.74814 * 10 9 8 32 32 H 0.96697 * 114.00066 * 178.10080 * 12 11 10 33 33 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 34 34 H 1.08993 * 113.76569 * 23.26601 * 21 9 8 35 35 H 1.09005 * 113.75789 * 251.89882 * 21 9 8 36 36 H 1.08997 * 113.61912 * 203.75040 * 22 3 2 37 37 H 1.09003 * 113.61863 * 334.66184 * 22 3 2 38 38 H 1.08996 * 113.53580 * 270.81108 * 23 22 3 39 39 H 1.09002 * 113.74188 * 139.94553 * 23 22 3 40 40 H 1.09004 * 113.61555 * 25.34985 * 24 3 2 41 41 H 1.09000 * 113.61555 * 156.16581 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2018 0.6049 -1.2741 5 6 2.5506 1.9623 -1.5463 6 1 1.4677 1.8447 -1.5849 7 8 2.8938 2.8735 -0.5003 8 6 3.0522 2.5095 -2.8842 9 7 2.4274 3.8131 -3.1453 10 6 3.0606 4.4823 -4.3031 11 6 2.9953 5.7707 -3.4631 12 8 1.7961 6.5232 -3.6567 13 6 4.2399 6.6158 -3.5511 14 1 5.0687 6.2944 -4.1645 15 6 4.3201 7.8000 -2.8494 16 7 5.4061 8.5378 -2.9266 17 14 2.8863 8.3563 -1.7892 18 1 1.9633 9.1886 -2.6018 19 1 2.1591 7.1673 -1.2765 20 1 3.3967 9.1552 -0.6461 21 6 2.9587 4.8482 -2.2313 22 6 3.2238 0.5616 1.2926 23 6 3.1735 -0.8748 1.8446 24 6 3.2247 -1.3545 0.3845 25 1 3.0142 -0.0632 -2.1147 26 1 4.2764 0.7363 -1.1473 27 1 3.8441 3.0264 -0.4079 28 1 2.7905 1.8145 -3.6821 29 1 4.1351 2.6272 -2.8456 30 1 2.4329 4.5064 -5.1938 31 1 4.0760 4.1425 -4.5076 32 1 1.7380 7.3183 -3.1095 33 1 5.4623 9.3711 -2.4332 34 1 3.9440 4.6145 -1.8282 35 1 2.2493 5.1648 -1.4666 36 1 4.2361 0.9446 1.1637 37 1 2.5714 1.2566 1.8214 38 1 2.2382 -1.1142 2.3504 39 1 4.0524 -1.1523 2.4266 40 1 2.5731 -2.2043 0.1810 41 1 4.2368 -1.4970 0.0055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119620737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:58 Heat of formation + Delta-G solvation = -2.609775 kcal Electronic energy + Delta-G solvation = -22578.357862 eV Core-core repulsion = 19267.888963 eV Total energy + Delta-G solvation = -3310.468899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.39547 -39.37448 -36.92425 -35.89565 -34.57587 -32.41234 -31.85485 -29.28234 -26.66726 -26.07227 -25.30392 -24.60905 -22.52860 -21.51946 -20.80963 -19.03760 -17.40748 -16.96372 -16.31185 -16.09171 -15.88743 -15.40375 -15.05562 -14.84216 -14.50540 -13.98672 -13.73253 -13.33598 -13.10843 -12.98538 -12.79669 -12.68279 -12.52351 -12.34810 -12.04756 -11.92033 -11.63397 -11.25969 -11.15288 -11.02672 -10.88636 -10.80998 -10.55115 -10.47501 -10.42758 -9.95942 -9.58209 -9.24309 -8.85753 -8.50628 -7.96081 -6.31871 -4.35639 2.58286 2.64143 3.10395 3.20197 3.25056 3.61952 4.05294 4.15892 4.21448 4.38464 4.52548 4.59085 4.60309 4.81377 4.96669 5.10765 5.17544 5.31319 5.37089 5.37651 5.42380 5.51258 5.58444 5.65815 5.74407 5.78284 5.80169 5.84359 5.97195 6.01056 6.19371 6.25875 6.50601 6.74630 6.94077 7.02460 7.37140 7.45851 7.75033 7.82115 8.16274 8.69422 8.72664 9.28462 10.80656 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026042 B = 0.004298 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.910371 B = 6513.064537 C = 6688.846177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.234 3.766 3 C 0.011 3.989 4 C -0.133 4.133 5 C 0.111 3.889 6 H 0.097 0.903 7 O -0.547 6.547 8 C -0.013 4.013 9 N -0.475 5.475 10 C 0.021 3.979 11 C 0.194 3.806 12 O -0.552 6.552 13 C -0.537 4.537 14 H 0.084 0.916 15 C 0.079 3.921 16 N -0.884 5.884 17 Si 0.859 3.141 18 H -0.269 1.269 19 H -0.251 1.251 20 H -0.287 1.287 21 C -0.006 4.006 22 C -0.109 4.109 23 C -0.149 4.149 24 C -0.120 4.120 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.370 0.630 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.347 0.653 33 H 0.268 0.732 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -18.067 7.422 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.084 4.084 3 C 0.008 3.992 4 C -0.172 4.172 5 C 0.051 3.949 6 H 0.115 0.885 7 O -0.352 6.352 8 C -0.142 4.142 9 N -0.198 5.198 10 C -0.107 4.107 11 C 0.153 3.847 12 O -0.363 6.363 13 C -0.574 4.574 14 H 0.102 0.898 15 C -0.126 4.126 16 N -0.521 5.521 17 Si 0.687 3.313 18 H -0.196 1.196 19 H -0.176 1.176 20 H -0.214 1.214 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.186 4.186 24 C -0.159 4.159 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.217 0.783 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.199 0.801 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.423 -18.522 7.129 19.994 hybrid contribution 1.364 0.848 0.769 1.780 sum -1.060 -17.674 7.898 19.387 Atomic orbital electron populations 1.81240 1.12528 1.08543 1.08235 1.28272 0.94062 0.92939 0.93171 1.19123 0.82260 0.99601 0.98250 1.22327 1.01024 0.97980 0.95893 1.21904 1.00068 0.86525 0.86379 0.88493 1.86686 1.28793 1.65472 1.54262 1.23284 0.97493 0.95731 0.97710 1.68525 1.46638 0.99602 1.05022 1.24030 0.97535 0.93765 0.95394 1.20586 0.83828 0.89051 0.91198 1.86459 1.42706 1.39684 1.67433 1.21399 1.00405 1.05702 1.29926 0.89824 1.24989 0.95752 0.96075 0.95735 1.69879 1.27056 1.13692 1.41461 0.87319 0.82989 0.80014 0.80931 1.19581 1.17573 1.21366 1.24829 0.98132 0.92812 0.97777 1.22983 1.01816 0.96730 0.93216 1.22991 1.02675 0.96664 0.96268 1.23033 1.01712 0.94709 0.96448 0.89941 0.89264 0.78276 0.90704 0.93912 0.90335 0.91030 0.80119 0.92159 0.91379 0.90597 0.88182 0.90228 0.90300 0.90475 0.90870 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.56 18.54 42.15 0.78 -5.78 16 2 C 0.23 2.86 12.63 -20.76 -0.26 2.60 16 3 C 0.01 0.09 0.90 -156.49 -0.14 -0.05 16 4 C -0.13 -1.11 4.45 -26.73 -0.12 -1.22 16 5 C 0.11 1.40 2.98 -26.73 -0.08 1.32 16 6 H 0.10 1.49 6.98 -51.93 -0.36 1.13 16 7 O -0.55 -7.34 9.92 -35.23 -0.35 -7.69 16 8 C -0.01 -0.18 4.67 -3.82 -0.02 -0.20 16 9 N -0.48 -9.18 6.26 -238.22 -1.49 -10.67 16 10 C 0.02 0.44 7.36 -2.77 -0.02 0.42 16 11 C 0.19 4.66 1.05 -90.84 -0.10 4.57 16 12 O -0.55 -14.02 13.32 -35.23 -0.47 -14.48 16 13 C -0.54 -14.54 9.20 -34.44 -0.32 -14.86 16 14 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 16 N -0.88 -25.68 13.96 55.43 0.77 -24.91 16 17 Si 0.86 20.28 24.34 -169.99 -4.14 16.14 16 18 H -0.27 -6.23 7.06 56.52 0.40 -5.83 16 19 H -0.25 -5.74 5.28 56.52 0.30 -5.44 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.01 -0.14 4.56 -2.76 -0.01 -0.15 16 22 C -0.11 -0.81 6.17 -25.83 -0.16 -0.97 16 23 C -0.15 -0.93 7.80 -25.83 -0.20 -1.13 16 24 C -0.12 -0.72 7.21 -25.92 -0.19 -0.91 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.56 7.98 -51.93 -0.41 0.14 16 27 H 0.37 3.88 8.37 45.56 0.38 4.26 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 30 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.07 1.38 7.75 -51.92 -0.40 0.97 16 32 H 0.35 8.48 3.31 45.56 0.15 8.64 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.07 1.34 6.87 -51.93 -0.36 0.99 16 35 H 0.08 1.71 6.91 -51.93 -0.36 1.35 16 36 H 0.10 0.59 7.99 -51.93 -0.41 0.17 16 37 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 41 H 0.10 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -32.54 325.42 -6.91 -39.45 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.21 Total: 11.56 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -1.71 Total: -8.52 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.06 Total: -41.36 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.82 Total: -22.17 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.14 Total: 16.14 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.54 -6.91 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119620737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.841 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds