Wall clock time and date at job start Tue Mar 31 2020 02:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 112.84606 * 115.36370 * 3 2 1 5 5 C 1.52996 * 109.47543 * 50.32660 * 4 3 2 6 6 H 1.08995 * 109.47356 * 305.00467 * 5 4 3 7 7 O 1.42904 * 109.46741 * 65.00359 * 5 4 3 8 8 C 1.53004 * 109.47452 * 184.99965 * 5 4 3 9 9 N 1.46895 * 109.47211 * 180.02562 * 8 5 4 10 10 C 1.47961 * 111.00270 * 170.00151 * 9 8 5 11 11 C 1.53934 * 86.18427 * 222.41862 * 10 9 8 12 12 O 1.42895 * 113.73076 * 269.25870 * 11 10 9 13 13 C 1.50696 * 113.73266 * 138.07361 * 11 10 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47958 * 110.99863 * 70.64272 * 9 8 5 22 22 C 1.53776 * 113.61458 * 246.55082 * 3 2 1 23 23 C 1.53962 * 87.01758 * 89.23431 * 22 3 2 24 24 C 1.53773 * 113.61849 * 344.16321 * 3 2 1 25 25 H 1.09004 * 109.47033 * 290.32905 * 4 3 2 26 26 H 1.09003 * 109.47361 * 170.33182 * 4 3 2 27 27 H 0.96696 * 114.00529 * 60.00268 * 7 5 4 28 28 H 1.09005 * 109.46718 * 60.00249 * 8 5 4 29 29 H 1.08999 * 109.46778 * 300.00702 * 8 5 4 30 30 H 1.08996 * 113.76309 * 108.09300 * 10 9 8 31 31 H 1.09008 * 113.85816 * 336.74814 * 10 9 8 32 32 H 0.96697 * 114.00066 * 178.10080 * 12 11 10 33 33 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 34 34 H 1.08993 * 113.76569 * 23.26601 * 21 9 8 35 35 H 1.09005 * 113.75789 * 251.89882 * 21 9 8 36 36 H 1.08997 * 113.61912 * 203.75040 * 22 3 2 37 37 H 1.09003 * 113.61863 * 334.66184 * 22 3 2 38 38 H 1.08996 * 113.53580 * 270.81108 * 23 22 3 39 39 H 1.09002 * 113.74188 * 139.94553 * 23 22 3 40 40 H 1.09004 * 113.61555 * 25.34985 * 24 3 2 41 41 H 1.09000 * 113.61555 * 156.16581 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2018 0.6049 -1.2741 5 6 2.5506 1.9623 -1.5463 6 1 1.4677 1.8447 -1.5849 7 8 2.8938 2.8735 -0.5003 8 6 3.0522 2.5095 -2.8842 9 7 2.4274 3.8131 -3.1453 10 6 3.0606 4.4823 -4.3031 11 6 2.9953 5.7707 -3.4631 12 8 1.7961 6.5232 -3.6567 13 6 4.2399 6.6158 -3.5511 14 1 5.0687 6.2944 -4.1645 15 6 4.3201 7.8000 -2.8494 16 7 5.4061 8.5378 -2.9266 17 14 2.8863 8.3563 -1.7892 18 1 1.9633 9.1886 -2.6018 19 1 2.1591 7.1673 -1.2765 20 1 3.3967 9.1552 -0.6461 21 6 2.9587 4.8482 -2.2313 22 6 3.2238 0.5616 1.2926 23 6 3.1735 -0.8748 1.8446 24 6 3.2247 -1.3545 0.3845 25 1 3.0142 -0.0632 -2.1147 26 1 4.2764 0.7363 -1.1473 27 1 3.8441 3.0264 -0.4079 28 1 2.7905 1.8145 -3.6821 29 1 4.1351 2.6272 -2.8456 30 1 2.4329 4.5064 -5.1938 31 1 4.0760 4.1425 -4.5076 32 1 1.7380 7.3183 -3.1095 33 1 5.4623 9.3711 -2.4332 34 1 3.9440 4.6145 -1.8282 35 1 2.2493 5.1648 -1.4666 36 1 4.2361 0.9446 1.1637 37 1 2.5714 1.2566 1.8214 38 1 2.2382 -1.1142 2.3504 39 1 4.0524 -1.1523 2.4266 40 1 2.5731 -2.2043 0.1810 41 1 4.2368 -1.4970 0.0055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119620737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:57 Heat of formation + Delta-G solvation = -30.559239 kcal Electronic energy + Delta-G solvation = -22579.569842 eV Core-core repulsion = 19267.888963 eV Total energy + Delta-G solvation = -3311.680879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.35464 -40.67417 -38.08008 -36.86967 -36.28379 -34.51713 -32.80397 -30.57053 -28.25769 -26.95784 -26.57869 -25.81929 -23.64323 -22.59420 -21.57430 -20.81950 -19.34739 -18.13575 -17.84794 -17.23502 -16.86310 -16.53972 -16.12613 -15.86219 -15.68490 -15.19933 -15.12185 -14.90062 -14.58575 -14.23526 -13.96927 -13.87901 -13.78610 -13.52440 -13.15403 -12.85679 -12.82376 -12.75269 -12.43091 -12.27628 -12.17441 -11.87838 -11.77375 -11.65869 -11.51124 -11.11502 -11.09258 -10.89159 -10.65271 -10.21330 -9.55160 -8.43357 -6.51400 1.21772 1.30014 1.36481 1.68358 1.72477 2.16903 2.81150 2.86021 2.99786 3.39367 3.60712 3.65590 3.69631 3.83615 3.98658 4.04616 4.12777 4.17444 4.23258 4.46554 4.54206 4.61221 4.71303 4.75269 4.85865 4.92716 4.95930 5.00323 5.02711 5.16079 5.18020 5.21459 5.22147 5.29824 5.37641 5.47446 5.50295 6.05302 6.30013 6.52836 6.55306 6.78821 6.95672 7.16435 8.72305 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026042 B = 0.004298 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.910371 B = 6513.064537 C = 6688.846177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.252 3.748 3 C 0.001 3.999 4 C -0.121 4.121 5 C 0.116 3.884 6 H 0.063 0.937 7 O -0.565 6.565 8 C -0.015 4.015 9 N -0.486 5.486 10 C 0.028 3.972 11 C 0.170 3.830 12 O -0.564 6.564 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.031 3.969 16 N -0.927 5.927 17 Si 0.916 3.084 18 H -0.261 1.261 19 H -0.241 1.241 20 H -0.282 1.282 21 C 0.013 3.987 22 C -0.108 4.108 23 C -0.147 4.147 24 C -0.105 4.105 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.383 0.617 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.348 0.652 33 H 0.271 0.729 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 -19.982 8.154 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.064 4.064 3 C -0.003 4.003 4 C -0.160 4.160 5 C 0.056 3.944 6 H 0.081 0.919 7 O -0.373 6.373 8 C -0.143 4.143 9 N -0.209 5.209 10 C -0.100 4.100 11 C 0.130 3.870 12 O -0.375 6.375 13 C -0.580 4.580 14 H 0.071 0.929 15 C -0.170 4.170 16 N -0.565 5.565 17 Si 0.742 3.258 18 H -0.187 1.187 19 H -0.165 1.165 20 H -0.209 1.209 21 C -0.116 4.116 22 C -0.146 4.146 23 C -0.185 4.185 24 C -0.144 4.144 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.233 0.767 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.200 0.800 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.366 -20.459 7.857 21.958 hybrid contribution 1.087 1.428 0.484 1.859 sum -0.279 -19.030 8.341 20.780 Atomic orbital electron populations 1.81236 1.14694 1.10863 1.10401 1.29155 0.95020 0.90993 0.91276 1.19494 0.79781 1.02011 0.98991 1.22289 1.02401 0.95181 0.96134 1.21788 0.98577 0.88695 0.85308 0.91857 1.86662 1.30197 1.66054 1.54356 1.23430 0.98243 0.93295 0.99362 1.68431 1.47408 1.01418 1.03645 1.23973 0.98420 0.92068 0.95549 1.20904 0.82053 0.89572 0.94509 1.86454 1.43112 1.40013 1.67889 1.21586 1.00891 1.06423 1.29062 0.92857 1.25703 0.98077 0.96187 0.97018 1.69996 1.29121 1.14436 1.42958 0.86376 0.80086 0.79945 0.79419 1.18738 1.16513 1.20852 1.24539 0.98400 0.92482 0.96210 1.23066 1.02363 0.96923 0.92269 1.22978 1.02811 0.95802 0.96880 1.23081 1.02936 0.92735 0.95598 0.88576 0.85830 0.76724 0.89094 0.92166 0.90422 0.89745 0.80019 0.91914 0.90115 0.92085 0.85679 0.92750 0.91965 0.88440 0.91091 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.47 18.54 20.01 0.37 -15.10 16 2 C 0.25 6.05 12.63 89.44 1.13 7.18 16 3 C 0.00 0.01 0.90 -53.46 -0.05 -0.04 16 4 C -0.12 -1.53 4.45 30.59 0.14 -1.40 16 5 C 0.12 2.64 2.98 30.59 0.09 2.73 16 6 H 0.06 1.90 6.98 -2.39 -0.02 1.88 16 7 O -0.57 -13.94 9.92 -148.98 -1.48 -15.41 16 8 C -0.01 -0.37 4.67 86.31 0.40 0.03 16 9 N -0.49 -17.91 6.26 -910.80 -5.70 -23.62 16 10 C 0.03 1.14 7.36 86.41 0.64 1.77 16 11 C 0.17 8.04 1.05 -10.89 -0.01 8.03 16 12 O -0.56 -28.21 13.32 -148.98 -1.98 -30.20 16 13 C -0.54 -29.54 9.20 25.60 0.24 -29.30 16 14 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 15 C 0.03 1.69 5.47 84.66 0.46 2.15 16 16 N -0.93 -54.50 13.96 21.45 0.30 -54.20 16 17 Si 0.92 41.73 24.34 68.60 1.67 43.40 16 18 H -0.26 -11.51 7.06 99.48 0.70 -10.81 16 19 H -0.24 -10.51 5.28 99.48 0.52 -9.99 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.01 0.52 4.56 86.41 0.39 0.92 16 22 C -0.11 -1.31 6.17 31.18 0.19 -1.12 16 23 C -0.15 -1.43 7.80 31.18 0.24 -1.19 16 24 C -0.11 -0.85 7.21 31.12 0.22 -0.62 16 25 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.12 0.80 7.98 -2.39 -0.02 0.78 16 27 H 0.38 6.82 8.37 -74.06 -0.62 6.20 16 28 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.06 1.39 7.69 -2.39 -0.02 1.37 16 30 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.08 3.10 7.75 -2.38 -0.02 3.08 16 32 H 0.35 16.65 3.31 -74.06 -0.25 16.40 16 33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.08 3.02 6.87 -2.39 -0.02 3.00 16 35 H 0.06 2.67 6.91 -2.38 -0.02 2.65 16 36 H 0.13 0.91 7.99 -2.39 -0.02 0.89 16 37 H 0.05 0.95 8.08 -2.39 -0.02 0.93 16 38 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.65 8.08 -2.38 -0.02 0.63 16 41 H 0.13 0.32 8.10 -2.39 -0.02 0.30 16 Total: -1.00 -73.03 325.42 -2.74 -75.77 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.00 Total: 30.21 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 4.09 Total: -10.86 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -5.03 Total: -92.91 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -3.46 Total: -45.61 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.67 Total: 43.40 kcal Total: -73.03 -2.74 -75.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119620737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.213 kcal (2) G-P(sol) polarization free energy of solvation -73.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds