Wall clock time and date at job start Tue Mar 31 2020 02:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53003 * 112.85179 * 54.14936 * 3 2 1 5 5 C 1.53000 * 109.47166 * 50.32792 * 4 3 2 6 6 H 1.08998 * 109.47068 * 55.00228 * 5 4 3 7 7 O 1.42902 * 109.46902 * 295.00116 * 5 4 3 8 8 C 1.52996 * 109.47204 * 175.00506 * 5 4 3 9 9 N 1.46900 * 109.47205 * 184.99977 * 8 5 4 10 10 C 1.47964 * 110.99873 * 189.99714 * 9 8 5 11 11 C 1.53936 * 86.17896 * 222.41598 * 10 9 8 12 12 O 1.42894 * 113.73695 * 269.25386 * 11 10 9 13 13 C 1.50710 * 113.72850 * 138.07690 * 11 10 9 14 14 H 1.07993 * 120.00160 * 6.89305 * 13 11 10 15 15 C 1.37874 * 119.99500 * 186.88767 * 13 11 10 16 16 N 1.31522 * 119.99594 * 178.34163 * 15 13 11 17 17 Si 1.86798 * 120.00325 * 358.34373 * 15 13 11 18 18 H 1.48495 * 109.47265 * 269.99805 * 17 15 13 19 19 H 1.48505 * 109.47143 * 29.99904 * 17 15 13 20 20 H 1.48499 * 109.47179 * 149.99934 * 17 15 13 21 21 C 1.48192 * 111.06814 * 90.56687 * 9 8 5 22 22 C 1.53785 * 113.61176 * 185.34124 * 3 2 1 23 23 C 1.53947 * 87.02113 * 89.23037 * 22 3 2 24 24 C 1.53776 * 113.61644 * 282.94791 * 3 2 1 25 25 H 1.08998 * 109.46384 * 290.32984 * 4 3 2 26 26 H 1.08993 * 109.46938 * 170.32990 * 4 3 2 27 27 H 0.96697 * 114.00298 * 299.99834 * 7 5 4 28 28 H 1.09007 * 109.47138 * 64.99681 * 8 5 4 29 29 H 1.09000 * 109.47106 * 305.00224 * 8 5 4 30 30 H 1.09002 * 113.75665 * 108.09615 * 10 9 8 31 31 H 1.09000 * 113.75903 * 336.73679 * 10 9 8 32 32 H 0.96694 * 114.00278 * 162.48386 * 12 11 10 33 33 H 0.96996 * 120.00167 * 358.20463 * 16 15 13 34 34 H 1.08996 * 113.75836 * 23.23806 * 21 9 8 35 35 H 1.09005 * 113.81861 * 251.80777 * 21 9 8 36 36 H 1.09000 * 113.61441 * 203.75418 * 22 3 2 37 37 H 1.09003 * 113.61323 * 334.64992 * 22 3 2 38 38 H 1.08997 * 113.54076 * 270.81551 * 23 22 3 39 39 H 1.08999 * 113.74570 * 139.93796 * 23 22 3 40 40 H 1.09001 * 113.61826 * 25.35093 * 24 3 2 41 41 H 1.09000 * 113.61343 * 156.17378 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2025 -0.8248 -1.1428 5 6 2.5518 -0.4099 -2.4639 6 1 2.6626 0.6657 -2.6014 7 8 1.1632 -0.7462 -2.4372 8 6 3.2323 -1.1447 -3.6206 9 7 2.6901 -0.6583 -4.8963 10 6 3.1439 -1.5042 -6.0222 11 6 3.3611 -0.1874 -6.7892 12 8 2.2209 0.2363 -7.5391 13 6 4.6365 -0.1561 -7.5915 14 1 5.2412 -1.0465 -7.6793 15 6 5.0312 1.0094 -8.2134 16 7 6.1606 1.0457 -8.8864 17 14 3.9619 2.5369 -8.1003 18 1 2.9995 2.5523 -9.2310 19 1 3.2166 2.5253 -6.8159 20 1 4.8197 3.7474 -8.1639 21 6 3.4805 0.4852 -5.4097 22 6 3.2233 1.4039 0.1312 23 6 3.1724 1.1960 1.6557 24 6 3.2242 -0.3148 1.3731 25 1 3.0150 -1.8833 -0.9621 26 1 4.2770 -0.6501 -1.1964 27 1 0.9893 -1.6899 -2.3175 28 1 3.0459 -2.2149 -3.5309 29 1 4.3058 -0.9589 -3.5876 30 1 2.3594 -2.1333 -6.4429 31 1 4.0648 -2.0505 -5.8178 32 1 2.2450 1.1673 -7.7992 33 1 6.7286 0.2602 -8.9235 34 1 4.4999 0.5221 -5.0257 35 1 2.9642 1.4429 -5.3419 36 1 4.2358 1.4756 -0.2662 37 1 2.5708 2.2017 -0.2237 38 1 2.2368 1.5236 2.1087 39 1 4.0510 1.5725 2.1796 40 1 2.5724 -0.9025 2.0197 41 1 4.2364 -0.7151 1.3159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119620739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:01 Heat of formation + Delta-G solvation = -7.702428 kcal Electronic energy + Delta-G solvation = -22391.576668 eV Core-core repulsion = 19080.886935 eV Total energy + Delta-G solvation = -3310.689733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.34635 -39.35262 -37.02276 -35.66944 -34.57435 -32.52331 -31.70846 -29.26232 -26.52301 -26.10327 -25.46900 -24.42006 -22.30763 -21.38562 -20.89025 -19.08854 -17.91351 -17.00326 -16.34452 -16.07065 -15.66577 -15.35397 -15.11233 -14.72109 -14.54527 -14.21023 -13.73512 -13.46793 -13.09869 -12.89318 -12.76911 -12.63909 -12.41993 -12.13718 -12.05031 -11.65547 -11.61389 -11.41514 -11.18801 -11.05559 -10.93386 -10.85920 -10.53604 -10.43743 -10.23723 -9.69806 -9.51014 -9.36047 -8.73252 -8.54121 -8.04474 -6.59822 -4.36762 2.73945 2.86669 3.21245 3.24466 3.40328 3.71510 4.07169 4.19413 4.28018 4.29706 4.44789 4.57983 4.69145 4.84582 4.97986 5.08946 5.11984 5.30099 5.33241 5.35822 5.41217 5.51925 5.56559 5.62529 5.65562 5.71552 5.76961 5.83065 5.91313 5.95255 6.06005 6.22386 6.42328 6.55986 6.87088 6.92485 7.66000 7.68387 7.71618 7.80607 8.14632 8.62198 8.72709 9.38385 10.74022 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.004155 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.014230 B = 6737.914668 C = 6993.855448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.236 3.764 3 C 0.012 3.988 4 C -0.134 4.134 5 C 0.113 3.887 6 H 0.099 0.901 7 O -0.541 6.541 8 C -0.012 4.012 9 N -0.467 5.467 10 C 0.022 3.978 11 C 0.203 3.797 12 O -0.554 6.554 13 C -0.609 4.609 14 H 0.065 0.935 15 C 0.035 3.965 16 N -0.899 5.899 17 Si 1.037 2.963 18 H -0.276 1.276 19 H -0.268 1.268 20 H -0.284 1.284 21 C -0.034 4.034 22 C -0.123 4.123 23 C -0.144 4.144 24 C -0.121 4.121 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.365 0.635 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.349 0.651 33 H 0.270 0.730 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -1.904 20.042 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.082 4.082 3 C 0.008 3.992 4 C -0.174 4.174 5 C 0.054 3.946 6 H 0.117 0.883 7 O -0.345 6.345 8 C -0.142 4.142 9 N -0.189 5.189 10 C -0.106 4.106 11 C 0.162 3.838 12 O -0.363 6.363 13 C -0.647 4.647 14 H 0.083 0.917 15 C -0.172 4.172 16 N -0.533 5.533 17 Si 0.866 3.134 18 H -0.202 1.202 19 H -0.195 1.195 20 H -0.211 1.211 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.182 4.182 24 C -0.159 4.159 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.211 0.789 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.199 0.801 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.207 -0.240 19.689 20.135 hybrid contribution 1.878 -1.904 0.326 2.694 sum -2.329 -2.144 20.015 20.264 Atomic orbital electron populations 1.81156 1.12447 1.07515 1.08784 1.27893 0.93715 0.93869 0.92763 1.19055 0.82974 0.99515 0.97651 1.22369 1.01295 0.99927 0.93761 1.21839 0.81491 1.00415 0.90901 0.88293 1.86695 1.23261 1.28999 1.95512 1.23355 0.97822 0.99427 0.93576 1.68587 1.45738 1.05294 0.99251 1.23929 0.98587 0.96890 0.91231 1.20438 0.85191 0.90695 0.87430 1.86464 1.45385 1.29395 1.75041 1.22405 1.06578 0.99684 1.36027 0.91717 1.25804 0.97722 1.01444 0.92191 1.70795 1.11316 1.33113 1.38046 0.84235 0.75804 0.76121 0.77277 1.20244 1.19475 1.21085 1.25222 0.95993 0.95632 0.99503 1.23101 1.01905 0.94568 0.96560 1.22929 1.02764 0.95996 0.96472 1.23023 1.01701 0.97442 0.93763 0.90589 0.88920 0.78892 0.91415 0.93184 0.90365 0.91386 0.80099 0.91949 0.91105 0.90541 0.87998 0.90536 0.90160 0.90424 0.90814 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.39 18.25 42.15 0.77 -5.62 16 2 C 0.24 2.85 11.59 -20.76 -0.24 2.61 16 3 C 0.01 0.10 0.94 -156.48 -0.15 -0.05 16 4 C -0.13 -1.11 4.50 -26.73 -0.12 -1.23 16 5 C 0.11 1.40 3.05 -26.73 -0.08 1.32 16 6 H 0.10 1.38 8.09 -51.93 -0.42 0.96 16 7 O -0.54 -7.81 10.61 -35.23 -0.37 -8.18 16 8 C -0.01 -0.18 4.43 -3.83 -0.02 -0.19 16 9 N -0.47 -8.94 6.11 -238.02 -1.45 -10.40 16 10 C 0.02 0.46 7.34 -2.76 -0.02 0.44 16 11 C 0.20 4.88 1.06 -90.83 -0.10 4.78 16 12 O -0.55 -13.78 13.26 -35.23 -0.47 -14.24 16 13 C -0.61 -16.64 9.05 -34.44 -0.31 -16.95 16 14 H 0.06 1.88 8.04 -52.49 -0.42 1.46 16 15 C 0.03 0.97 5.47 -17.82 -0.10 0.87 16 16 N -0.90 -26.59 13.70 55.43 0.76 -25.84 16 17 Si 1.04 23.70 24.77 -169.99 -4.21 19.49 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.57 4.71 56.52 0.27 -5.30 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.03 -0.72 6.21 -2.63 -0.02 -0.74 16 22 C -0.12 -0.91 7.15 -25.83 -0.18 -1.09 16 23 C -0.14 -0.89 7.80 -25.83 -0.20 -1.09 16 24 C -0.12 -0.72 7.21 -25.92 -0.19 -0.91 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.62 7.98 -51.93 -0.41 0.21 16 27 H 0.37 4.31 9.05 45.56 0.41 4.72 16 28 H 0.07 0.88 8.08 -51.92 -0.42 0.46 16 29 H 0.05 0.70 7.39 -51.93 -0.38 0.31 16 30 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.07 1.35 7.87 -51.93 -0.41 0.94 16 32 H 0.35 8.04 4.33 45.56 0.20 8.24 16 33 H 0.27 7.94 8.71 -40.82 -0.36 7.58 16 34 H 0.07 1.44 7.44 -51.93 -0.39 1.05 16 35 H 0.08 1.61 6.55 -51.93 -0.34 1.27 16 36 H 0.10 0.61 7.99 -51.93 -0.41 0.19 16 37 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 41 H 0.10 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -33.08 329.76 -6.97 -40.05 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.24 Total: 12.01 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.72 Total: -12.24 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.08 Total: -41.85 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.84 Total: -22.43 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.21 Total: 19.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.08 -6.97 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119620739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.343 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds