Wall clock time and date at job start Tue Mar 31 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53003 * 112.85179 * 54.14936 * 3 2 1 5 5 C 1.53000 * 109.47166 * 50.32792 * 4 3 2 6 6 H 1.08998 * 109.47068 * 55.00228 * 5 4 3 7 7 O 1.42902 * 109.46902 * 295.00116 * 5 4 3 8 8 C 1.52996 * 109.47204 * 175.00506 * 5 4 3 9 9 N 1.46900 * 109.47205 * 184.99977 * 8 5 4 10 10 C 1.47964 * 110.99873 * 189.99714 * 9 8 5 11 11 C 1.53936 * 86.17896 * 222.41598 * 10 9 8 12 12 O 1.42894 * 113.73695 * 269.25386 * 11 10 9 13 13 C 1.50710 * 113.72850 * 138.07690 * 11 10 9 14 14 H 1.07993 * 120.00160 * 6.89305 * 13 11 10 15 15 C 1.37874 * 119.99500 * 186.88767 * 13 11 10 16 16 N 1.31522 * 119.99594 * 178.34163 * 15 13 11 17 17 Si 1.86798 * 120.00325 * 358.34373 * 15 13 11 18 18 H 1.48495 * 109.47265 * 269.99805 * 17 15 13 19 19 H 1.48505 * 109.47143 * 29.99904 * 17 15 13 20 20 H 1.48499 * 109.47179 * 149.99934 * 17 15 13 21 21 C 1.48192 * 111.06814 * 90.56687 * 9 8 5 22 22 C 1.53785 * 113.61176 * 185.34124 * 3 2 1 23 23 C 1.53947 * 87.02113 * 89.23037 * 22 3 2 24 24 C 1.53776 * 113.61644 * 282.94791 * 3 2 1 25 25 H 1.08998 * 109.46384 * 290.32984 * 4 3 2 26 26 H 1.08993 * 109.46938 * 170.32990 * 4 3 2 27 27 H 0.96697 * 114.00298 * 299.99834 * 7 5 4 28 28 H 1.09007 * 109.47138 * 64.99681 * 8 5 4 29 29 H 1.09000 * 109.47106 * 305.00224 * 8 5 4 30 30 H 1.09002 * 113.75665 * 108.09615 * 10 9 8 31 31 H 1.09000 * 113.75903 * 336.73679 * 10 9 8 32 32 H 0.96694 * 114.00278 * 162.48386 * 12 11 10 33 33 H 0.96996 * 120.00167 * 358.20463 * 16 15 13 34 34 H 1.08996 * 113.75836 * 23.23806 * 21 9 8 35 35 H 1.09005 * 113.81861 * 251.80777 * 21 9 8 36 36 H 1.09000 * 113.61441 * 203.75418 * 22 3 2 37 37 H 1.09003 * 113.61323 * 334.64992 * 22 3 2 38 38 H 1.08997 * 113.54076 * 270.81551 * 23 22 3 39 39 H 1.08999 * 113.74570 * 139.93796 * 23 22 3 40 40 H 1.09001 * 113.61826 * 25.35093 * 24 3 2 41 41 H 1.09000 * 113.61343 * 156.17378 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2025 -0.8248 -1.1428 5 6 2.5518 -0.4099 -2.4639 6 1 2.6626 0.6657 -2.6014 7 8 1.1632 -0.7462 -2.4372 8 6 3.2323 -1.1447 -3.6206 9 7 2.6901 -0.6583 -4.8963 10 6 3.1439 -1.5042 -6.0222 11 6 3.3611 -0.1874 -6.7892 12 8 2.2209 0.2363 -7.5391 13 6 4.6365 -0.1561 -7.5915 14 1 5.2412 -1.0465 -7.6793 15 6 5.0312 1.0094 -8.2134 16 7 6.1606 1.0457 -8.8864 17 14 3.9619 2.5369 -8.1003 18 1 2.9995 2.5523 -9.2310 19 1 3.2166 2.5253 -6.8159 20 1 4.8197 3.7474 -8.1639 21 6 3.4805 0.4852 -5.4097 22 6 3.2233 1.4039 0.1312 23 6 3.1724 1.1960 1.6557 24 6 3.2242 -0.3148 1.3731 25 1 3.0150 -1.8833 -0.9621 26 1 4.2770 -0.6501 -1.1964 27 1 0.9893 -1.6899 -2.3175 28 1 3.0459 -2.2149 -3.5309 29 1 4.3058 -0.9589 -3.5876 30 1 2.3594 -2.1333 -6.4429 31 1 4.0648 -2.0505 -5.8178 32 1 2.2450 1.1673 -7.7992 33 1 6.7286 0.2602 -8.9235 34 1 4.4999 0.5221 -5.0257 35 1 2.9642 1.4429 -5.3419 36 1 4.2358 1.4756 -0.2662 37 1 2.5708 2.2017 -0.2237 38 1 2.2368 1.5236 2.1087 39 1 4.0510 1.5725 2.1796 40 1 2.5724 -0.9025 2.0197 41 1 4.2364 -0.7151 1.3159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119620739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:00 Heat of formation + Delta-G solvation = -36.171706 kcal Electronic energy + Delta-G solvation = -22392.811189 eV Core-core repulsion = 19080.886935 eV Total energy + Delta-G solvation = -3311.924254 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27225 -40.69850 -38.10022 -36.65521 -36.29354 -34.65249 -32.67119 -30.51760 -28.03348 -27.12374 -26.65322 -25.65125 -23.46663 -22.38340 -21.71294 -20.88811 -19.94789 -17.87240 -17.72716 -17.19288 -17.01256 -16.67748 -16.08410 -15.91771 -15.61424 -15.16631 -15.15644 -14.83646 -14.47012 -14.35219 -13.88707 -13.75250 -13.59355 -13.35570 -13.16049 -13.04047 -12.81050 -12.68071 -12.24770 -12.19061 -11.98995 -11.82630 -11.67923 -11.54948 -11.49117 -11.17454 -11.10500 -10.81449 -10.60100 -10.37598 -9.64234 -8.77473 -6.58172 1.37413 1.44855 1.59654 1.87249 1.98403 2.37738 2.84860 2.92115 3.00328 3.42861 3.54951 3.63318 3.73308 3.80696 3.94739 3.98772 4.08997 4.12485 4.28518 4.43390 4.45263 4.59208 4.63285 4.72885 4.77004 4.86711 4.89356 4.92081 5.02132 5.05736 5.13682 5.14625 5.17165 5.26953 5.46562 5.48530 5.70118 5.88356 6.21271 6.39282 6.78810 6.84597 6.87010 7.25986 8.53178 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.004155 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.014230 B = 6737.914668 C = 6993.855448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.255 3.745 3 C 0.002 3.998 4 C -0.123 4.123 5 C 0.117 3.883 6 H 0.083 0.917 7 O -0.565 6.565 8 C -0.014 4.014 9 N -0.471 5.471 10 C 0.027 3.973 11 C 0.181 3.819 12 O -0.565 6.565 13 C -0.614 4.614 14 H 0.031 0.969 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 1.071 2.929 18 H -0.263 1.263 19 H -0.236 1.236 20 H -0.283 1.283 21 C -0.021 4.021 22 C -0.124 4.124 23 C -0.143 4.143 24 C -0.107 4.107 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.375 0.625 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.356 0.644 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 -1.797 22.317 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.062 4.062 3 C -0.001 4.001 4 C -0.162 4.162 5 C 0.057 3.943 6 H 0.101 0.899 7 O -0.371 6.371 8 C -0.143 4.143 9 N -0.193 5.193 10 C -0.102 4.102 11 C 0.141 3.859 12 O -0.375 6.375 13 C -0.652 4.652 14 H 0.049 0.951 15 C -0.212 4.212 16 N -0.566 5.566 17 Si 0.893 3.107 18 H -0.188 1.188 19 H -0.161 1.161 20 H -0.210 1.210 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.180 4.180 24 C -0.145 4.145 25 H 0.110 0.890 26 H 0.138 0.862 27 H 0.222 0.778 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.206 0.794 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.141 0.859 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.848 -0.164 21.985 22.320 hybrid contribution 1.795 -2.027 -0.401 2.737 sum -2.053 -2.191 21.584 21.792 Atomic orbital electron populations 1.81161 1.14513 1.09682 1.10951 1.28681 0.94591 0.91989 0.90891 1.19377 0.80635 1.00697 0.99433 1.22313 1.02258 1.00729 0.90857 1.21830 0.80839 0.99280 0.92331 0.89923 1.86674 1.24653 1.30040 1.95685 1.23487 0.98468 1.00662 0.91647 1.68528 1.45842 1.04154 1.00791 1.23860 0.98912 0.95797 0.91602 1.20631 0.83450 0.93736 0.88090 1.86443 1.45337 1.30183 1.75507 1.22588 1.07745 0.98408 1.36480 0.95088 1.27190 0.97946 1.04693 0.91335 1.70921 1.12652 1.32658 1.40356 0.83841 0.74950 0.72621 0.79321 1.18814 1.16086 1.20969 1.24990 0.96641 0.96207 0.97131 1.23200 1.02428 0.93117 0.97501 1.22920 1.02954 0.96412 0.95738 1.23066 1.02824 0.97209 0.91410 0.88958 0.86195 0.77801 0.89669 0.92085 0.90578 0.90693 0.79378 0.93449 0.90596 0.90352 0.85861 0.92461 0.91629 0.88486 0.90992 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.67 18.25 20.00 0.37 -14.30 16 2 C 0.26 5.88 11.59 89.44 1.04 6.92 16 3 C 0.00 0.03 0.94 -53.46 -0.05 -0.02 16 4 C -0.12 -1.54 4.50 30.60 0.14 -1.41 16 5 C 0.12 2.57 3.05 30.59 0.09 2.66 16 6 H 0.08 2.11 8.09 -2.39 -0.02 2.09 16 7 O -0.57 -15.37 10.61 -148.98 -1.58 -16.95 16 8 C -0.01 -0.35 4.43 86.30 0.38 0.03 16 9 N -0.47 -17.02 6.11 -910.18 -5.56 -22.57 16 10 C 0.03 1.09 7.34 86.41 0.63 1.73 16 11 C 0.18 8.53 1.06 -10.89 -0.01 8.52 16 12 O -0.56 -27.37 13.26 -148.98 -1.98 -29.35 16 13 C -0.61 -33.90 9.05 25.60 0.23 -33.67 16 14 H 0.03 1.86 8.04 -2.91 -0.02 1.84 16 15 C -0.01 -0.67 5.47 84.65 0.46 -0.21 16 16 N -0.93 -56.20 13.70 21.45 0.29 -55.90 16 17 Si 1.07 46.79 24.77 68.60 1.70 48.49 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.24 -9.02 4.71 99.48 0.47 -8.55 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 C -0.02 -0.82 6.21 86.37 0.54 -0.28 16 22 C -0.12 -1.48 7.15 31.18 0.22 -1.25 16 23 C -0.14 -1.35 7.80 31.18 0.24 -1.11 16 24 C -0.11 -0.86 7.21 31.12 0.22 -0.64 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.12 0.94 7.98 -2.39 -0.02 0.92 16 27 H 0.37 8.20 9.05 -74.06 -0.67 7.53 16 28 H 0.08 1.91 8.08 -2.38 -0.02 1.90 16 29 H 0.06 1.47 7.39 -2.39 -0.02 1.45 16 30 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.07 2.88 7.87 -2.39 -0.02 2.86 16 32 H 0.36 15.70 4.33 -74.06 -0.32 15.38 16 33 H 0.26 15.65 8.71 -92.71 -0.81 14.84 16 34 H 0.08 2.92 7.44 -2.39 -0.02 2.90 16 35 H 0.08 3.09 6.55 -2.38 -0.02 3.07 16 36 H 0.12 0.96 7.99 -2.39 -0.02 0.94 16 37 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16 38 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 39 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 41 H 0.13 0.38 8.10 -2.39 -0.02 0.36 16 Total: -1.00 -73.92 329.76 -2.83 -76.75 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.22 Total: 32.56 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.14 Total: -18.74 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -4.90 Total: -92.78 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -3.56 Total: -46.30 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.70 Total: 48.49 kcal Total: -73.92 -2.83 -76.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119620739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.582 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds