Wall clock time and date at job start Tue Mar 31 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00068 * 2 1 4 4 H 1.48492 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47107 * 299.99796 * 3 2 1 6 6 H 1.48502 * 109.47166 * 59.99239 * 3 2 1 7 7 C 1.37877 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00158 * 185.21260 * 7 2 1 9 9 C 1.50703 * 119.99659 * 5.21202 * 7 2 1 10 10 C 1.53005 * 112.99888 * 65.15714 * 9 7 2 11 11 O 1.45196 * 109.46560 * 62.81571 * 10 9 7 12 12 C 1.34237 * 116.99919 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99632 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00387 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47019 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.35958 * 55.27803 * 15 14 12 17 17 C 1.50067 * 109.24533 * 295.61560 * 15 14 12 18 18 C 1.29257 * 124.01588 * 222.60140 * 17 15 14 19 19 C 1.50063 * 124.21961 * 0.73723 * 18 17 15 20 20 C 1.53020 * 110.03701 * 342.64165 * 19 18 17 21 21 C 1.53027 * 109.35378 * 174.99966 * 15 14 12 22 22 C 1.54032 * 113.81590 * 196.98393 * 9 7 2 23 23 O 1.44447 * 85.42543 * 91.80962 * 22 9 7 24 24 C 1.44183 * 93.38061 * 24.08873 * 23 22 9 25 25 H 0.97001 * 120.00323 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.47151 * 302.81472 * 10 9 7 27 27 H 1.09006 * 109.47057 * 182.80555 * 10 9 7 28 28 H 1.09002 * 109.46856 * 59.99447 * 14 12 11 29 29 H 1.09000 * 109.46579 * 299.99803 * 14 12 11 30 30 H 1.08001 * 117.96170 * 42.70933 * 17 15 14 31 31 H 1.08004 * 117.81389 * 180.60020 * 18 17 15 32 32 H 1.09000 * 109.35623 * 222.50730 * 19 18 17 33 33 H 1.08998 * 109.36073 * 102.78548 * 19 18 17 34 34 H 1.09000 * 109.64291 * 169.19010 * 20 19 18 35 35 H 1.08993 * 109.64888 * 289.82577 * 20 19 18 36 36 H 1.09000 * 109.64591 * 49.82129 * 21 15 14 37 37 H 1.09006 * 109.81748 * 289.29159 * 21 15 14 38 38 H 1.09005 * 113.86437 * 205.91314 * 22 9 7 39 39 H 1.08991 * 113.86587 * 337.62365 * 22 9 7 40 40 H 1.08997 * 113.86976 * 221.76843 * 24 23 22 41 41 H 1.09006 * 113.98001 * 90.07260 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0811 -1.1959 0.0855 9 6 1.2557 -2.4965 -0.1174 10 6 0.5478 -2.6592 -1.4641 11 8 1.5340 -2.6823 -2.5295 12 6 1.0739 -2.8197 -3.7830 13 8 -0.1137 -2.9178 -3.9832 14 6 2.0383 -2.8515 -4.9406 15 6 1.2606 -3.0158 -6.2479 16 1 0.5164 -2.2234 -6.3276 17 6 0.5706 -4.3484 -6.2489 18 6 0.5230 -5.1372 -7.2718 19 6 1.1628 -4.8410 -8.5965 20 6 1.4849 -3.3487 -8.7011 21 6 2.2290 -2.9227 -7.4291 22 6 2.0790 -3.7278 0.3053 23 8 1.5104 -3.5139 1.6158 24 6 0.3624 -2.8126 1.0970 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1349 -1.8238 -1.6190 27 1 -0.0139 -3.5933 -1.4688 28 1 2.7246 -3.6895 -4.8186 29 1 2.6035 -1.9199 -4.9681 30 1 0.0827 -4.6667 -5.3395 31 1 -0.0101 -6.0703 -7.1642 32 1 0.4792 -5.1201 -9.3983 33 1 2.0836 -5.4168 -8.6899 34 1 2.1159 -3.1702 -9.5718 35 1 0.5598 -2.7796 -8.7924 36 1 3.0770 -3.5866 -7.2610 37 1 2.5824 -1.8972 -7.5374 38 1 1.7589 -4.6560 -0.1681 39 1 3.1571 -3.5740 0.2605 40 1 0.0820 -1.9345 1.6787 41 1 -0.4842 -3.4590 0.8654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123059452.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:57 Heat of formation + Delta-G solvation = -101.659447 kcal Electronic energy + Delta-G solvation = -22297.860703 eV Core-core repulsion = 18950.803936 eV Total energy + Delta-G solvation = -3347.056767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07315 -39.18742 -38.32399 -35.66519 -32.95776 -32.71026 -31.06362 -29.97934 -27.62789 -25.42028 -25.19522 -24.16486 -22.53508 -22.17838 -19.98506 -18.99589 -17.99782 -16.99211 -16.46417 -16.02138 -15.82032 -15.57622 -14.95317 -14.41345 -14.38592 -14.27882 -14.09673 -13.80833 -13.20948 -12.77276 -12.57082 -12.52807 -12.20186 -12.00800 -11.91124 -11.59797 -11.44318 -11.01886 -10.95793 -10.76574 -10.62984 -10.46622 -10.24036 -9.96553 -9.93267 -9.49416 -9.35155 -9.07127 -8.98163 -8.75733 -8.32152 -6.19240 -4.22612 2.35472 2.83307 3.23426 3.32001 3.36132 3.42687 4.32105 4.61777 4.64436 4.76258 4.88138 5.07862 5.11121 5.16495 5.28312 5.39725 5.44397 5.50170 5.62285 5.66526 5.76140 5.78641 5.84330 6.00290 6.02024 6.07349 6.17508 6.25469 6.28925 6.31223 6.39321 6.58066 6.73010 6.98279 6.99421 7.15411 7.27319 7.37012 7.40241 7.77175 8.17580 8.49466 8.75344 9.41412 10.88926 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.004393 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.236877 B = 6372.111015 C = 7170.705870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.487 4.487 8 H 0.067 0.933 9 C 0.033 3.967 10 C 0.082 3.918 11 O -0.337 6.337 12 C 0.451 3.549 13 O -0.521 6.521 14 C -0.108 4.108 15 C -0.048 4.048 16 H 0.089 0.911 17 C -0.132 4.132 18 C -0.172 4.172 19 C -0.088 4.088 20 C -0.120 4.120 21 C -0.115 4.115 22 C 0.030 3.970 23 O -0.390 6.390 24 C 0.050 3.950 25 H 0.264 0.736 26 H 0.088 0.912 27 H 0.035 0.965 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 -6.622 -14.402 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.524 4.524 8 H 0.085 0.915 9 C 0.032 3.968 10 C 0.008 3.992 11 O -0.252 6.252 12 C 0.295 3.705 13 O -0.412 6.412 14 C -0.146 4.146 15 C -0.066 4.066 16 H 0.108 0.892 17 C -0.150 4.150 18 C -0.191 4.191 19 C -0.125 4.125 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.047 4.047 23 O -0.309 6.309 24 C -0.027 4.027 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.054 0.946 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.803 -6.588 -14.128 15.838 hybrid contribution -0.029 0.885 -0.065 0.888 sum 2.774 -5.702 -14.193 15.545 Atomic orbital electron populations 1.69889 1.05933 1.27150 1.49682 1.24976 0.94957 0.99389 0.94434 0.86414 0.80238 0.83094 0.77620 1.19508 1.20926 1.20908 1.20639 0.93296 0.88311 1.50151 0.91520 1.21098 0.92552 0.94596 0.88545 1.23468 0.90193 1.00102 0.85436 1.86500 1.42219 1.81385 1.15115 1.23562 0.88898 0.72852 0.85228 1.90601 1.18252 1.46333 1.86008 1.21386 0.97587 1.05489 0.90107 1.19925 0.96924 0.97055 0.92731 0.89247 1.22179 0.98697 0.95125 0.99022 1.21939 1.02029 0.99941 0.95141 1.20426 1.00115 0.96411 0.95583 1.21595 1.00580 0.96078 0.97485 1.21657 0.97882 1.01751 0.93975 1.24074 0.99454 0.97397 0.83753 1.89528 1.37420 1.77834 1.26083 1.23898 0.88188 0.94434 0.96144 0.92581 0.89383 0.94647 0.88082 0.87676 0.87125 0.88287 0.91507 0.91206 0.91736 0.91688 0.91420 0.91343 0.92874 0.90349 0.88352 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 11.22 55.43 0.62 -23.46 16 2 C 0.06 1.71 5.24 -17.82 -0.09 1.62 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.49 -12.85 8.13 -34.44 -0.28 -13.13 16 8 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.03 0.79 0.56 -154.58 -0.09 0.70 16 10 C 0.08 1.90 4.63 37.16 0.17 2.07 16 11 O -0.34 -7.24 10.01 -39.28 -0.39 -7.64 16 12 C 0.45 8.46 7.59 36.01 0.27 8.73 16 13 O -0.52 -10.92 14.00 -18.75 -0.26 -11.19 16 14 C -0.11 -1.46 5.25 -27.88 -0.15 -1.60 16 15 C -0.05 -0.60 2.12 -92.06 -0.20 -0.80 16 16 H 0.09 1.25 7.96 -51.93 -0.41 0.83 16 17 C -0.13 -1.75 8.40 -35.85 -0.30 -2.05 16 18 C -0.17 -1.95 9.78 -35.86 -0.35 -2.30 16 19 C -0.09 -0.80 6.12 -28.18 -0.17 -0.97 16 20 C -0.12 -1.07 6.01 -26.52 -0.16 -1.23 16 21 C -0.12 -1.11 5.30 -26.51 -0.14 -1.25 16 22 C 0.03 0.66 8.34 37.64 0.31 0.97 16 23 O -0.39 -9.32 12.41 -35.23 -0.44 -9.76 16 24 C 0.05 1.20 7.92 37.64 0.30 1.49 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.09 2.30 6.96 -51.93 -0.36 1.94 16 27 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.11 1.71 6.47 -52.49 -0.34 1.37 16 31 H 0.10 1.04 8.06 -52.48 -0.42 0.62 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 39 H 0.08 1.64 8.08 -51.93 -0.42 1.22 16 40 H 0.10 2.50 7.43 -51.93 -0.39 2.12 16 41 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -29.11 334.36 -7.85 -36.97 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.53 Total: 2.07 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.87 Total: -7.74 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.62 Total: -23.46 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -1.09 Total: -28.58 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.11 -7.85 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123059452.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.693 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds