Wall clock time and date at job start Tue Mar 31 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00068 * 2 1 4 4 H 1.48492 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47107 * 299.99796 * 3 2 1 6 6 H 1.48502 * 109.47166 * 59.99239 * 3 2 1 7 7 C 1.37877 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00158 * 185.21260 * 7 2 1 9 9 C 1.50703 * 119.99659 * 5.21202 * 7 2 1 10 10 C 1.53005 * 112.99888 * 65.15714 * 9 7 2 11 11 O 1.45196 * 109.46560 * 62.81571 * 10 9 7 12 12 C 1.34237 * 116.99919 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99632 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00387 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47019 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.35958 * 55.27803 * 15 14 12 17 17 C 1.50067 * 109.24533 * 295.61560 * 15 14 12 18 18 C 1.29257 * 124.01588 * 222.60140 * 17 15 14 19 19 C 1.50063 * 124.21961 * 0.73723 * 18 17 15 20 20 C 1.53020 * 110.03701 * 342.64165 * 19 18 17 21 21 C 1.53027 * 109.35378 * 174.99966 * 15 14 12 22 22 C 1.54032 * 113.81590 * 196.98393 * 9 7 2 23 23 O 1.44447 * 85.42543 * 91.80962 * 22 9 7 24 24 C 1.44183 * 93.38061 * 24.08873 * 23 22 9 25 25 H 0.97001 * 120.00323 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.47151 * 302.81472 * 10 9 7 27 27 H 1.09006 * 109.47057 * 182.80555 * 10 9 7 28 28 H 1.09002 * 109.46856 * 59.99447 * 14 12 11 29 29 H 1.09000 * 109.46579 * 299.99803 * 14 12 11 30 30 H 1.08001 * 117.96170 * 42.70933 * 17 15 14 31 31 H 1.08004 * 117.81389 * 180.60020 * 18 17 15 32 32 H 1.09000 * 109.35623 * 222.50730 * 19 18 17 33 33 H 1.08998 * 109.36073 * 102.78548 * 19 18 17 34 34 H 1.09000 * 109.64291 * 169.19010 * 20 19 18 35 35 H 1.08993 * 109.64888 * 289.82577 * 20 19 18 36 36 H 1.09000 * 109.64591 * 49.82129 * 21 15 14 37 37 H 1.09006 * 109.81748 * 289.29159 * 21 15 14 38 38 H 1.09005 * 113.86437 * 205.91314 * 22 9 7 39 39 H 1.08991 * 113.86587 * 337.62365 * 22 9 7 40 40 H 1.08997 * 113.86976 * 221.76843 * 24 23 22 41 41 H 1.09006 * 113.98001 * 90.07260 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0811 -1.1959 0.0855 9 6 1.2557 -2.4965 -0.1174 10 6 0.5478 -2.6592 -1.4641 11 8 1.5340 -2.6823 -2.5295 12 6 1.0739 -2.8197 -3.7830 13 8 -0.1137 -2.9178 -3.9832 14 6 2.0383 -2.8515 -4.9406 15 6 1.2606 -3.0158 -6.2479 16 1 0.5164 -2.2234 -6.3276 17 6 0.5706 -4.3484 -6.2489 18 6 0.5230 -5.1372 -7.2718 19 6 1.1628 -4.8410 -8.5965 20 6 1.4849 -3.3487 -8.7011 21 6 2.2290 -2.9227 -7.4291 22 6 2.0790 -3.7278 0.3053 23 8 1.5104 -3.5139 1.6158 24 6 0.3624 -2.8126 1.0970 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1349 -1.8238 -1.6190 27 1 -0.0139 -3.5933 -1.4688 28 1 2.7246 -3.6895 -4.8186 29 1 2.6035 -1.9199 -4.9681 30 1 0.0827 -4.6667 -5.3395 31 1 -0.0101 -6.0703 -7.1642 32 1 0.4792 -5.1201 -9.3983 33 1 2.0836 -5.4168 -8.6899 34 1 2.1159 -3.1702 -9.5718 35 1 0.5598 -2.7796 -8.7924 36 1 3.0770 -3.5866 -7.2610 37 1 2.5824 -1.8972 -7.5374 38 1 1.7589 -4.6560 -0.1681 39 1 3.1571 -3.5740 0.2605 40 1 0.0820 -1.9345 1.6787 41 1 -0.4842 -3.4590 0.8654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123059452.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:57 Heat of formation + Delta-G solvation = -117.148241 kcal Electronic energy + Delta-G solvation = -22298.532347 eV Core-core repulsion = 18950.803936 eV Total energy + Delta-G solvation = -3347.728411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61688 -40.89068 -39.39202 -37.28068 -34.91685 -33.74760 -31.89510 -31.83706 -28.75168 -27.27366 -27.06254 -25.90308 -23.53854 -23.05924 -21.39722 -20.88299 -18.90596 -18.53972 -18.25733 -17.44365 -17.23277 -16.94485 -16.79792 -16.20579 -16.14695 -15.77738 -15.13780 -14.99053 -14.44607 -14.07823 -13.86640 -13.68542 -13.54907 -13.40259 -13.21532 -13.00461 -12.87167 -12.61369 -12.45921 -12.35324 -11.84712 -11.75898 -11.71602 -11.46825 -11.26552 -11.16815 -10.95121 -10.84734 -10.70511 -10.22727 -9.89980 -8.19926 -6.29114 1.32844 1.40015 1.41710 1.43287 1.54107 1.95128 2.40164 2.98577 3.20916 3.63443 3.77904 3.84020 3.99152 4.16071 4.25284 4.27724 4.40311 4.44300 4.45848 4.47797 4.48515 4.59100 4.69577 4.74372 4.78577 4.81761 4.91651 5.09230 5.10079 5.15929 5.21265 5.23216 5.41758 5.45123 5.49976 5.51002 5.71822 5.73765 5.83716 6.08000 6.21933 6.70877 6.92625 7.37312 8.87113 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.004393 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.236877 B = 6372.111015 C = 7170.705870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.017 3.983 10 C 0.095 3.905 11 O -0.347 6.347 12 C 0.444 3.556 13 O -0.549 6.549 14 C -0.099 4.099 15 C -0.044 4.044 16 H 0.066 0.934 17 C -0.161 4.161 18 C -0.156 4.156 19 C -0.089 4.089 20 C -0.120 4.120 21 C -0.110 4.110 22 C 0.040 3.960 23 O -0.403 6.403 24 C 0.053 3.947 25 H 0.264 0.736 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 -7.171 -16.389 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.017 3.983 10 C 0.020 3.980 11 O -0.263 6.263 12 C 0.290 3.710 13 O -0.440 6.440 14 C -0.136 4.136 15 C -0.062 4.062 16 H 0.084 0.916 17 C -0.179 4.179 18 C -0.174 4.174 19 C -0.126 4.126 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.036 4.036 23 O -0.323 6.323 24 C -0.024 4.024 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.596 -7.147 -16.123 18.225 hybrid contribution -0.632 0.979 0.503 1.269 sum 3.965 -6.167 -15.620 17.255 Atomic orbital electron populations 1.69994 1.07019 1.27642 1.50327 1.25652 0.95666 1.02232 0.94247 0.85540 0.79392 0.79546 0.77462 1.18796 1.20756 1.20770 1.20865 0.93185 0.89658 1.50207 0.92153 1.21163 0.93233 0.95007 0.88931 1.23076 0.89948 0.98925 0.86020 1.86506 1.41815 1.81951 1.15984 1.24684 0.89637 0.71466 0.85239 1.90589 1.19887 1.47439 1.86111 1.21580 0.96770 1.07324 0.87969 1.19900 0.97024 0.95841 0.93449 0.91570 1.22031 1.00784 0.96417 0.98714 1.22220 1.00256 0.99255 0.95630 1.20519 1.00970 0.96888 0.94225 1.21625 1.00516 0.95688 0.97927 1.21660 0.97404 1.02953 0.92734 1.24167 0.99676 0.97379 0.82388 1.89499 1.37604 1.77849 1.27329 1.23813 0.88852 0.94104 0.95597 0.92722 0.92900 0.93856 0.85697 0.85830 0.90306 0.87901 0.90133 0.89439 0.89425 0.92731 0.90088 0.90152 0.90212 0.89499 0.90742 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.43 11.22 21.45 0.24 -50.19 16 2 C 0.02 1.17 5.24 84.66 0.44 1.61 16 3 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.50 -26.64 8.13 25.60 0.21 -26.43 16 8 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.02 0.84 0.56 -52.23 -0.03 0.81 16 10 C 0.09 4.47 4.63 71.98 0.33 4.81 16 11 O -0.35 -14.94 10.01 -51.48 -0.52 -15.45 16 12 C 0.44 16.76 7.59 71.24 0.54 17.30 16 13 O -0.55 -23.75 14.00 21.96 0.31 -23.44 16 14 C -0.10 -2.54 5.25 29.85 0.16 -2.39 16 15 C -0.04 -1.05 2.12 -11.73 -0.02 -1.08 16 16 H 0.07 1.87 7.96 -2.39 -0.02 1.85 16 17 C -0.16 -4.21 8.40 27.22 0.23 -3.98 16 18 C -0.16 -3.27 9.78 27.21 0.27 -3.00 16 19 C -0.09 -1.34 6.12 29.66 0.18 -1.16 16 20 C -0.12 -1.78 6.01 30.73 0.18 -1.59 16 21 C -0.11 -1.81 5.30 30.74 0.16 -1.65 16 22 C 0.04 1.70 8.34 72.30 0.60 2.31 16 23 O -0.40 -19.06 12.41 -148.98 -1.85 -20.91 16 24 C 0.05 2.55 7.92 72.30 0.57 3.13 16 25 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 26 H 0.05 2.86 6.96 -2.39 -0.02 2.84 16 27 H 0.04 1.93 8.12 -2.38 -0.02 1.91 16 28 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.08 2.53 6.47 -2.91 -0.02 2.51 16 31 H 0.10 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 36 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 37 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 38 H 0.08 2.94 8.10 -2.38 -0.02 2.92 16 39 H 0.09 3.50 8.08 -2.39 -0.02 3.48 16 40 H 0.07 3.89 7.43 -2.39 -0.02 3.87 16 41 H 0.07 2.87 8.09 -2.38 -0.02 2.85 16 Total: -1.00 -63.67 334.36 5.04 -58.63 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.00 Total: 18.04 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 3.83 Total: -11.31 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.24 Total: -50.19 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -2.06 Total: -59.80 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -63.67 5.04 -58.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123059452.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.514 kcal (2) G-P(sol) polarization free energy of solvation -63.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds