Wall clock time and date at job start Tue Mar 31 2020 01:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48506 * 109.46636 * 275.40321 * 3 2 1 5 5 H 1.48498 * 109.47275 * 35.40292 * 3 2 1 6 6 H 1.48499 * 109.46911 * 155.40656 * 3 2 1 7 7 C 1.37879 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00164 * 353.73414 * 7 2 1 9 9 C 1.50704 * 120.00029 * 173.73126 * 7 2 1 10 10 C 1.53001 * 112.99761 * 85.90493 * 9 7 2 11 11 O 1.45195 * 109.47033 * 46.03852 * 10 9 7 12 12 C 1.34232 * 117.00248 * 184.57603 * 11 10 9 13 13 O 1.20830 * 119.99229 * 5.25920 * 12 11 10 14 14 C 1.50693 * 120.00491 * 184.98492 * 12 11 10 15 15 C 1.50703 * 109.47238 * 174.67057 * 14 12 11 16 16 C 1.29443 * 117.95521 * 94.73792 * 15 14 12 17 17 C 1.50072 * 124.07292 * 180.23861 * 16 15 14 18 18 C 1.53025 * 110.20158 * 343.31429 * 17 16 15 19 19 C 1.53395 * 108.43313 * 49.25031 * 18 17 16 20 20 C 1.50060 * 117.96487 * 275.00186 * 15 14 12 21 21 C 1.54034 * 113.92546 * 217.83828 * 9 7 2 22 22 O 1.44180 * 85.51698 * 91.66095 * 21 9 7 23 23 C 1.44179 * 93.33991 * 24.19302 * 22 21 9 24 24 H 0.97005 * 119.99936 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47126 * 286.04074 * 10 9 7 26 26 H 1.08997 * 109.47049 * 166.04017 * 10 9 7 27 27 H 1.09000 * 109.47525 * 294.67658 * 14 12 11 28 28 H 1.09006 * 109.46764 * 54.67744 * 14 12 11 29 29 H 1.08000 * 117.96952 * 0.46602 * 16 15 14 30 30 H 1.08999 * 109.47974 * 222.99938 * 17 16 15 31 31 H 1.08993 * 109.17749 * 103.44452 * 17 16 15 32 32 H 1.08999 * 109.64550 * 289.56802 * 18 17 16 33 33 H 1.08993 * 109.81537 * 169.03337 * 18 17 16 34 34 H 1.09008 * 109.64254 * 172.87978 * 19 18 17 35 35 H 1.09001 * 109.64745 * 52.25138 * 19 18 17 36 36 H 1.09007 * 109.36206 * 283.05333 * 20 15 14 37 37 H 1.09003 * 109.35878 * 42.77739 * 20 15 14 38 38 H 1.09000 * 113.86086 * 205.80897 * 21 9 7 39 39 H 1.08993 * 113.86591 * 337.50917 * 21 9 7 40 40 H 1.08997 * 113.85886 * 221.66275 * 23 22 21 41 41 H 1.08999 * 113.98450 * 89.96971 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3824 2.1123 -1.3940 5 1 1.5084 2.6170 0.8111 6 1 3.5991 1.4098 0.5827 7 6 2.0045 -1.1941 0.0005 8 1 1.4694 -2.1265 0.1030 9 6 3.5048 -1.1981 -0.1420 10 6 4.2325 -1.0219 1.1923 11 8 3.6359 -1.8945 2.1878 12 6 4.0991 -1.7926 3.4436 13 8 4.9051 -0.9367 3.7225 14 6 3.6092 -2.7416 4.5067 15 6 4.3731 -2.5029 5.7837 16 6 3.8511 -1.7101 6.6639 17 6 4.4938 -1.3724 7.9773 18 6 5.5975 -2.3818 8.3006 19 6 6.5000 -2.5249 7.0685 20 6 5.6940 -3.1944 5.9533 21 6 4.0479 -2.3575 -0.9984 22 8 3.9374 -1.4413 -2.1061 23 6 4.0258 -0.2766 -1.2609 24 1 -0.4850 0.8401 -0.0004 25 1 4.1463 0.0144 1.5192 26 1 5.2848 -1.2776 1.0688 27 1 2.5466 -2.5737 4.6821 28 1 3.7652 -3.7687 4.1767 29 1 2.8919 -1.2669 6.4407 30 1 3.7419 -1.3941 8.7661 31 1 4.9243 -0.3727 7.9187 32 1 5.1522 -3.3468 8.5426 33 1 6.1861 -2.0273 9.1467 34 1 7.3641 -3.1414 7.3169 35 1 6.8313 -1.5396 6.7405 36 1 5.5243 -4.2405 6.2082 37 1 6.2546 -3.1363 5.0202 38 1 5.0734 -2.6393 -0.7596 39 1 3.3735 -3.2113 -1.0632 40 1 3.3337 0.5200 -1.5342 41 1 5.0437 0.0789 -1.1014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123060155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:39 Heat of formation + Delta-G solvation = -88.158825 kcal Electronic energy + Delta-G solvation = -22381.928970 eV Core-core repulsion = 19035.457634 eV Total energy + Delta-G solvation = -3346.471336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18968 -39.51352 -38.39866 -35.79507 -33.00492 -32.79281 -30.82976 -30.67821 -27.83277 -25.99704 -25.25060 -24.26957 -23.33513 -22.02075 -20.31375 -19.12583 -17.67088 -17.10237 -16.54552 -16.24561 -16.03799 -15.65298 -15.44734 -14.73000 -14.58288 -14.23044 -13.89858 -13.79205 -13.65664 -12.95305 -12.82308 -12.63874 -12.45320 -12.21968 -12.13155 -11.96323 -11.65520 -11.02184 -10.90098 -10.56366 -10.47384 -10.41789 -10.35836 -10.30138 -10.19501 -9.79270 -9.53989 -9.18378 -8.81165 -8.72323 -8.59589 -6.21472 -4.20253 2.13278 2.71528 3.12720 3.19875 3.27511 3.43902 4.24521 4.52442 4.55451 4.61553 4.81167 5.04731 5.12009 5.15178 5.16613 5.29941 5.41218 5.46987 5.50798 5.57122 5.70963 5.72721 5.76260 5.83212 5.84112 5.86433 5.95988 5.97558 6.00854 6.08548 6.19746 6.23554 6.32290 6.59923 6.61902 6.92070 6.96720 6.98001 7.16245 7.53594 8.30415 8.40584 8.83201 9.38162 10.91060 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.004481 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.579325 B = 6246.921405 C = 6736.461383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.482 4.482 8 H 0.086 0.914 9 C -0.005 4.005 10 C 0.068 3.932 11 O -0.323 6.323 12 C 0.454 3.546 13 O -0.520 6.520 14 C -0.084 4.084 15 C -0.107 4.107 16 C -0.143 4.143 17 C -0.088 4.088 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.079 4.079 21 C 0.040 3.960 22 O -0.370 6.370 23 C 0.023 3.977 24 H 0.266 0.734 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.360 -5.295 13.339 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.696 3.304 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.182 1.182 7 C -0.519 4.519 8 H 0.104 0.896 9 C -0.006 4.006 10 C -0.006 4.006 11 O -0.238 6.238 12 C 0.297 3.703 13 O -0.410 6.410 14 C -0.121 4.121 15 C -0.108 4.108 16 C -0.161 4.161 17 C -0.124 4.124 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.116 4.116 21 C -0.037 4.037 22 O -0.288 6.288 23 C -0.054 4.054 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.358 -4.945 13.083 17.404 hybrid contribution 0.388 1.248 0.056 1.308 sum 10.747 -3.697 13.139 17.372 Atomic orbital electron populations 1.69859 1.06072 1.27106 1.49351 1.24937 0.94739 0.98657 0.94275 0.87300 0.80826 0.84426 0.77887 1.20173 1.21670 1.18219 1.20291 0.86135 0.95278 1.50205 0.89560 1.21654 0.98614 0.92217 0.88155 1.23794 0.94644 0.93554 0.88625 1.86606 1.60323 1.59578 1.17271 1.23585 0.79013 0.83759 0.83958 1.90607 1.33032 1.34901 1.82410 1.20491 1.01678 0.99504 0.90472 1.20326 0.96495 0.99878 0.94062 1.21931 1.00391 0.97855 0.95880 1.20409 0.97564 0.99430 0.95046 1.21599 0.96988 0.99506 0.97616 1.21583 0.97641 1.01308 0.95087 1.20347 0.93240 0.98670 0.99386 1.24025 0.98382 0.95255 0.86044 1.89569 1.94356 1.16839 1.28070 1.24254 0.98775 0.91337 0.91022 0.92339 0.91328 0.93456 0.87173 0.87537 0.87778 0.91182 0.90869 0.91814 0.91915 0.91858 0.91502 0.90974 0.91084 0.92357 0.89386 0.89873 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.16 5.43 -17.82 -0.10 2.06 16 3 Si 0.87 21.02 23.79 -169.99 -4.04 16.98 16 4 H -0.27 -6.49 6.78 56.52 0.38 -6.11 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -5.84 4.72 56.52 0.27 -5.57 16 7 C -0.48 -13.11 8.43 -34.44 -0.29 -13.40 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 C -0.01 -0.12 0.57 -154.58 -0.09 -0.21 16 10 C 0.07 1.45 4.82 37.16 0.18 1.63 16 11 O -0.32 -6.76 9.63 -39.26 -0.38 -7.14 16 12 C 0.45 8.36 7.94 36.00 0.29 8.65 16 13 O -0.52 -10.67 15.71 -18.75 -0.29 -10.96 16 14 C -0.08 -1.15 5.82 -29.04 -0.17 -1.32 16 15 C -0.11 -1.37 4.34 -100.94 -0.44 -1.81 16 16 C -0.14 -1.76 9.37 -35.90 -0.34 -2.10 16 17 C -0.09 -0.88 6.11 -28.17 -0.17 -1.06 16 18 C -0.12 -1.07 6.01 -26.51 -0.16 -1.23 16 19 C -0.12 -1.19 6.01 -26.51 -0.16 -1.34 16 20 C -0.08 -0.88 5.80 -28.18 -0.16 -1.04 16 21 C 0.04 0.81 8.34 37.61 0.31 1.13 16 22 O -0.37 -8.45 12.40 -35.23 -0.44 -8.88 16 23 C 0.02 0.50 6.53 37.61 0.25 0.75 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 25 H 0.07 1.56 5.50 -51.93 -0.29 1.28 16 26 H 0.05 0.90 7.89 -51.93 -0.41 0.49 16 27 H 0.11 1.42 7.80 -51.93 -0.41 1.02 16 28 H 0.11 1.22 8.11 -51.93 -0.42 0.80 16 29 H 0.10 1.30 7.74 -52.49 -0.41 0.89 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.01 7.93 -51.93 -0.41 0.60 16 39 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 40 H 0.08 1.95 3.82 -51.93 -0.20 1.75 16 41 H 0.06 1.18 8.10 -51.93 -0.42 0.75 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -31.44 326.06 -6.98 -38.43 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.47 Total: 1.62 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.05 Total: -9.29 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.77 Total: -25.67 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -1.11 Total: -26.98 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.04 Total: 16.98 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.44 -6.98 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123060155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.731 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds