Wall clock time and date at job start Tue Mar 31 2020 01:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48506 * 109.46636 * 275.40321 * 3 2 1 5 5 H 1.48498 * 109.47275 * 35.40292 * 3 2 1 6 6 H 1.48499 * 109.46911 * 155.40656 * 3 2 1 7 7 C 1.37879 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00164 * 353.73414 * 7 2 1 9 9 C 1.50704 * 120.00029 * 173.73126 * 7 2 1 10 10 C 1.53001 * 112.99761 * 85.90493 * 9 7 2 11 11 O 1.45195 * 109.47033 * 46.03852 * 10 9 7 12 12 C 1.34232 * 117.00248 * 184.57603 * 11 10 9 13 13 O 1.20830 * 119.99229 * 5.25920 * 12 11 10 14 14 C 1.50693 * 120.00491 * 184.98492 * 12 11 10 15 15 C 1.50703 * 109.47238 * 174.67057 * 14 12 11 16 16 C 1.29443 * 117.95521 * 94.73792 * 15 14 12 17 17 C 1.50072 * 124.07292 * 180.23861 * 16 15 14 18 18 C 1.53025 * 110.20158 * 343.31429 * 17 16 15 19 19 C 1.53395 * 108.43313 * 49.25031 * 18 17 16 20 20 C 1.50060 * 117.96487 * 275.00186 * 15 14 12 21 21 C 1.54034 * 113.92546 * 217.83828 * 9 7 2 22 22 O 1.44180 * 85.51698 * 91.66095 * 21 9 7 23 23 C 1.44179 * 93.33991 * 24.19302 * 22 21 9 24 24 H 0.97005 * 119.99936 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47126 * 286.04074 * 10 9 7 26 26 H 1.08997 * 109.47049 * 166.04017 * 10 9 7 27 27 H 1.09000 * 109.47525 * 294.67658 * 14 12 11 28 28 H 1.09006 * 109.46764 * 54.67744 * 14 12 11 29 29 H 1.08000 * 117.96952 * 0.46602 * 16 15 14 30 30 H 1.08999 * 109.47974 * 222.99938 * 17 16 15 31 31 H 1.08993 * 109.17749 * 103.44452 * 17 16 15 32 32 H 1.08999 * 109.64550 * 289.56802 * 18 17 16 33 33 H 1.08993 * 109.81537 * 169.03337 * 18 17 16 34 34 H 1.09008 * 109.64254 * 172.87978 * 19 18 17 35 35 H 1.09001 * 109.64745 * 52.25138 * 19 18 17 36 36 H 1.09007 * 109.36206 * 283.05333 * 20 15 14 37 37 H 1.09003 * 109.35878 * 42.77739 * 20 15 14 38 38 H 1.09000 * 113.86086 * 205.80897 * 21 9 7 39 39 H 1.08993 * 113.86591 * 337.50917 * 21 9 7 40 40 H 1.08997 * 113.85886 * 221.66275 * 23 22 21 41 41 H 1.08999 * 113.98450 * 89.96971 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3824 2.1123 -1.3940 5 1 1.5084 2.6170 0.8111 6 1 3.5991 1.4098 0.5827 7 6 2.0045 -1.1941 0.0005 8 1 1.4694 -2.1265 0.1030 9 6 3.5048 -1.1981 -0.1420 10 6 4.2325 -1.0219 1.1923 11 8 3.6359 -1.8945 2.1878 12 6 4.0991 -1.7926 3.4436 13 8 4.9051 -0.9367 3.7225 14 6 3.6092 -2.7416 4.5067 15 6 4.3731 -2.5029 5.7837 16 6 3.8511 -1.7101 6.6639 17 6 4.4938 -1.3724 7.9773 18 6 5.5975 -2.3818 8.3006 19 6 6.5000 -2.5249 7.0685 20 6 5.6940 -3.1944 5.9533 21 6 4.0479 -2.3575 -0.9984 22 8 3.9374 -1.4413 -2.1061 23 6 4.0258 -0.2766 -1.2609 24 1 -0.4850 0.8401 -0.0004 25 1 4.1463 0.0144 1.5192 26 1 5.2848 -1.2776 1.0688 27 1 2.5466 -2.5737 4.6821 28 1 3.7652 -3.7687 4.1767 29 1 2.8919 -1.2669 6.4407 30 1 3.7419 -1.3941 8.7661 31 1 4.9243 -0.3727 7.9187 32 1 5.1522 -3.3468 8.5426 33 1 6.1861 -2.0273 9.1467 34 1 7.3641 -3.1414 7.3169 35 1 6.8313 -1.5396 6.7405 36 1 5.5243 -4.2405 6.2082 37 1 6.2546 -3.1363 5.0202 38 1 5.0734 -2.6393 -0.7596 39 1 3.3735 -3.2113 -1.0632 40 1 3.3337 0.5200 -1.5342 41 1 5.0437 0.0789 -1.1014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123060155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:39 Heat of formation + Delta-G solvation = -107.628045 kcal Electronic energy + Delta-G solvation = -22382.773219 eV Core-core repulsion = 19035.457634 eV Total energy + Delta-G solvation = -3347.315585 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.75385 -41.07924 -39.40009 -37.33578 -34.88678 -33.96065 -32.50941 -31.64668 -28.97474 -27.67399 -27.12264 -25.98301 -24.18668 -22.99493 -21.62768 -20.97431 -18.86290 -18.41396 -18.25625 -17.99628 -17.56054 -17.25407 -16.53524 -16.35341 -16.05214 -15.61961 -15.15371 -15.05313 -14.91290 -14.58902 -14.17354 -13.91517 -13.72237 -13.54658 -13.13022 -13.03256 -12.88761 -12.67727 -12.35732 -12.24270 -12.12739 -11.92209 -11.64675 -11.43048 -11.40822 -11.31605 -11.10839 -10.98991 -10.68635 -10.43104 -9.75103 -8.36777 -6.39043 1.10150 1.19450 1.24963 1.27946 1.33095 2.06193 2.21781 2.76822 3.12321 3.51479 3.58777 3.76523 3.97278 4.07771 4.09288 4.22614 4.24815 4.28400 4.34598 4.40802 4.44241 4.51059 4.52369 4.56427 4.68189 4.72986 4.74441 4.92812 4.99639 5.03835 5.08490 5.18341 5.21998 5.30882 5.31574 5.48293 5.54548 5.62444 5.73091 6.05019 6.20656 6.62855 6.86757 7.22709 8.79539 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.004481 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.579325 B = 6246.921405 C = 6736.461383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.021 3.979 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.230 1.230 7 C -0.480 4.480 8 H 0.045 0.955 9 C -0.021 4.021 10 C 0.072 3.928 11 O -0.342 6.342 12 C 0.451 3.549 13 O -0.542 6.542 14 C -0.080 4.080 15 C -0.120 4.120 16 C -0.149 4.149 17 C -0.090 4.090 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.080 4.080 21 C 0.049 3.951 22 O -0.391 6.391 23 C 0.025 3.975 24 H 0.267 0.733 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.940 -5.660 14.502 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.177 4.177 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.225 1.225 6 H -0.154 1.154 7 C -0.517 4.517 8 H 0.063 0.937 9 C -0.022 4.022 10 C -0.002 4.002 11 O -0.257 6.257 12 C 0.296 3.704 13 O -0.433 6.433 14 C -0.117 4.117 15 C -0.120 4.120 16 C -0.167 4.167 17 C -0.126 4.126 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.117 4.117 21 C -0.027 4.027 22 O -0.310 6.310 23 C -0.052 4.052 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.149 0.851 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.965 -5.328 14.247 19.986 hybrid contribution -0.460 1.261 -0.282 1.371 sum 12.504 -4.068 13.965 19.182 Atomic orbital electron populations 1.70005 1.07938 1.27959 1.51876 1.25715 0.95388 1.02335 0.94274 0.86434 0.80739 0.79878 0.78487 1.18914 1.22486 1.15385 1.20440 0.88835 0.93564 1.48899 0.93679 1.21639 0.95979 0.94721 0.89886 1.23608 0.95925 0.92952 0.87717 1.86619 1.61073 1.59606 1.18419 1.24445 0.78348 0.83977 0.83627 1.90588 1.34167 1.36066 1.82493 1.20648 1.01926 0.99612 0.89562 1.20473 0.97356 1.00654 0.93485 1.22173 1.00252 0.97239 0.97044 1.20476 0.98359 0.99535 0.94271 1.21599 0.96490 0.99608 0.97596 1.21593 0.98380 1.00501 0.95155 1.20395 0.92197 0.99810 0.99284 1.24159 1.00507 0.94035 0.83990 1.89548 1.94741 1.17609 1.29068 1.24367 1.00559 0.90629 0.89638 0.92429 0.92918 0.90404 0.86669 0.85057 0.88662 0.89628 0.91365 0.90887 0.90302 0.89991 0.93414 0.88909 0.92356 0.88059 0.89957 0.91531 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 2 C 0.02 1.20 5.43 84.66 0.46 1.65 16 3 Si 0.92 43.28 23.79 68.60 1.63 44.91 16 4 H -0.26 -11.81 6.78 99.48 0.67 -11.14 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.23 -9.76 4.72 99.48 0.47 -9.29 16 7 C -0.48 -26.62 8.43 25.60 0.22 -26.40 16 8 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 9 C -0.02 -0.94 0.57 -52.23 -0.03 -0.97 16 10 C 0.07 2.93 4.82 71.98 0.35 3.28 16 11 O -0.34 -14.01 9.63 -51.44 -0.50 -14.51 16 12 C 0.45 16.20 7.94 71.23 0.57 16.76 16 13 O -0.54 -21.71 15.71 21.95 0.34 -21.37 16 14 C -0.08 -2.11 5.82 29.10 0.17 -1.94 16 15 C -0.12 -2.88 4.34 -15.10 -0.07 -2.95 16 16 C -0.15 -3.51 9.37 27.04 0.25 -3.26 16 17 C -0.09 -1.65 6.11 29.66 0.18 -1.47 16 18 C -0.12 -1.76 6.01 30.73 0.18 -1.58 16 19 C -0.12 -2.11 6.01 30.74 0.18 -1.93 16 20 C -0.08 -1.61 5.80 29.66 0.17 -1.44 16 21 C 0.05 1.90 8.34 72.27 0.60 2.51 16 22 O -0.39 -17.03 12.40 -148.98 -1.85 -18.87 16 23 C 0.02 1.01 6.53 72.27 0.47 1.49 16 24 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 25 H 0.05 2.30 5.50 -2.39 -0.01 2.28 16 26 H 0.08 2.69 7.89 -2.39 -0.02 2.67 16 27 H 0.12 2.90 7.80 -2.39 -0.02 2.88 16 28 H 0.13 2.75 8.11 -2.38 -0.02 2.73 16 29 H 0.10 2.35 7.74 -2.91 -0.02 2.32 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 36 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.10 3.07 7.93 -2.39 -0.02 3.05 16 39 H 0.08 3.23 8.09 -2.39 -0.02 3.21 16 40 H 0.07 2.98 3.82 -2.39 -0.01 2.97 16 41 H 0.10 3.44 8.10 -2.39 -0.02 3.42 16 Total: -1.00 -69.72 326.06 4.39 -65.33 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.74 Total: 18.47 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 3.71 Total: -16.24 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.30 Total: -57.73 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -2.00 Total: -54.75 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.63 Total: 44.91 kcal Total: -69.72 4.39 -65.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123060155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.295 kcal (2) G-P(sol) polarization free energy of solvation -69.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds