Wall clock time and date at job start Tue Mar 31 2020 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.64161 * 2 1 4 4 O 1.20822 * 119.99996 * 244.62009 * 3 2 1 5 5 O 1.34227 * 119.99853 * 64.61691 * 3 2 1 6 6 C 1.45203 * 116.99656 * 185.17301 * 5 3 2 7 7 C 1.53000 * 109.46921 * 184.82587 * 6 5 3 8 8 C 1.50697 * 113.00215 * 303.65136 * 7 6 5 9 9 H 1.08001 * 120.00175 * 95.27258 * 8 7 6 10 10 C 1.37879 * 120.00016 * 275.27599 * 8 7 6 11 11 N 1.31517 * 120.00245 * 186.07502 * 10 8 7 12 12 Si 1.86804 * 119.99831 * 6.07517 * 10 8 7 13 13 H 1.48506 * 109.47099 * 266.33692 * 12 10 8 14 14 H 1.48498 * 109.47404 * 26.33917 * 12 10 8 15 15 H 1.48505 * 109.46985 * 146.34067 * 12 10 8 16 16 C 1.54036 * 113.81691 * 75.47865 * 7 6 5 17 17 O 1.44444 * 85.42694 * 91.80576 * 16 7 6 18 18 C 1.44174 * 93.37831 * 24.08937 * 17 16 7 19 19 C 1.53025 * 109.81378 * 120.52545 * 2 1 3 20 20 C 1.50068 * 110.14916 * 70.35237 * 19 2 1 21 21 C 1.29447 * 124.07034 * 17.13180 * 20 19 2 22 22 C 1.50068 * 124.07868 * 359.52827 * 21 20 19 23 23 C 1.53021 * 110.14503 * 17.13186 * 22 21 20 24 24 H 1.08997 * 109.46725 * 65.57138 * 1 2 3 25 25 H 1.08995 * 109.46996 * 185.56866 * 1 2 3 26 26 H 1.08996 * 109.46945 * 305.57264 * 1 2 3 27 27 H 1.08999 * 109.47198 * 64.82654 * 6 5 3 28 28 H 1.09002 * 109.46750 * 304.82449 * 6 5 3 29 29 H 0.96997 * 119.99801 * 179.97438 * 11 10 8 30 30 H 1.08997 * 113.86518 * 205.91294 * 16 7 6 31 31 H 1.09006 * 113.86380 * 337.61706 * 16 7 6 32 32 H 1.09004 * 113.86569 * 221.76448 * 18 17 16 33 33 H 1.09003 * 113.98624 * 90.07694 * 18 17 16 34 34 H 1.08997 * 109.35721 * 190.56158 * 19 2 1 35 35 H 1.09007 * 109.35853 * 310.14248 * 19 2 1 36 36 H 1.07991 * 117.96534 * 197.15303 * 20 19 2 37 37 H 1.08002 * 117.95768 * 179.51313 * 21 20 19 38 38 H 1.09000 * 109.35762 * 256.92505 * 22 21 20 39 39 H 1.09004 * 109.24285 * 137.27239 * 22 21 20 40 40 H 1.08998 * 109.64385 * 190.87449 * 23 22 21 41 41 H 1.09004 * 109.63974 * 70.24624 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4193 0.0000 4 8 2.6620 1.8375 -0.9454 5 8 1.7929 2.2189 1.0502 6 6 2.2091 3.6051 0.9339 7 6 1.9607 4.3252 2.2608 8 6 0.5270 4.2405 2.7174 9 1 0.2265 3.4711 3.4132 10 6 -0.4010 5.1451 2.2468 11 7 -1.6226 5.1476 2.7339 12 14 0.0770 6.3673 0.9173 13 1 0.5140 7.6388 1.5477 14 1 1.1893 5.8083 0.1077 15 1 -1.0926 6.6263 0.0395 16 6 2.9845 3.9781 3.3581 17 8 3.7214 5.1206 2.8703 18 6 2.5479 5.7482 2.3157 19 6 2.0487 -0.7312 1.2401 20 6 1.7783 -2.2027 1.1234 21 6 1.4897 -2.8012 0.0125 22 6 1.3754 -2.1055 -1.3123 23 6 2.0457 -0.7316 -1.2457 24 1 -0.3633 0.4250 -0.9357 25 1 -0.3633 -1.0228 0.0997 26 1 -0.3633 0.5978 0.8359 27 1 1.6367 4.0913 0.1439 28 1 3.2710 3.6464 0.6913 29 1 -2.2753 5.7843 2.4030 30 1 2.6027 4.0996 4.3718 31 1 3.4914 3.0256 3.2029 32 1 2.7093 6.1968 1.3354 33 1 2.0311 6.4121 3.0087 34 1 3.1223 -0.5675 1.3335 35 1 1.5474 -0.3408 2.1259 36 1 1.8271 -2.7994 2.0222 37 1 1.3210 -3.8676 0.0407 38 1 0.3225 -1.9820 -1.5658 39 1 1.8630 -2.7088 -2.0781 40 1 1.7947 -0.1577 -2.1377 41 1 3.1266 -0.8542 -1.1773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123060156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:18 Heat of formation + Delta-G solvation = -86.033301 kcal Electronic energy + Delta-G solvation = -23123.077942 eV Core-core repulsion = 19776.698776 eV Total energy + Delta-G solvation = -3346.379166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62743 -39.66813 -38.27548 -35.81701 -32.95621 -32.41752 -30.92384 -30.41212 -27.09978 -26.01285 -25.80522 -24.19817 -23.58735 -22.69568 -19.88053 -18.89793 -17.45544 -17.12276 -16.97893 -16.36382 -15.83942 -15.55706 -15.08491 -14.88331 -14.45318 -14.30642 -13.82432 -13.42209 -13.40462 -13.21320 -12.70871 -12.61251 -12.33019 -12.23667 -11.77154 -11.72047 -11.58570 -11.23536 -10.93817 -10.84981 -10.78669 -10.67997 -10.36667 -10.29476 -9.99672 -9.76858 -9.25975 -9.07154 -9.05148 -8.86592 -8.60154 -6.23633 -4.23640 2.22803 2.63296 3.11796 3.14364 3.21241 3.26223 4.23623 4.50187 4.54686 4.64899 4.83477 5.03665 5.09527 5.13051 5.22992 5.27517 5.42068 5.51557 5.64237 5.70287 5.75447 5.81579 5.89177 5.94305 5.97520 6.02020 6.07038 6.12124 6.13920 6.18833 6.20593 6.32469 6.43980 6.58208 6.69830 6.87921 6.90780 6.93638 7.12721 7.49201 8.25799 8.36028 8.81047 9.37030 10.89053 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.005485 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.752291 B = 5103.284693 C = 5425.217673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.463 3.537 4 O -0.523 6.523 5 O -0.323 6.323 6 C 0.088 3.912 7 C -0.017 4.017 8 C -0.502 4.502 9 H 0.085 0.915 10 C 0.079 3.921 11 N -0.890 5.890 12 Si 0.855 3.145 13 H -0.272 1.272 14 H -0.257 1.257 15 H -0.286 1.286 16 C 0.049 3.951 17 O -0.398 6.398 18 C 0.030 3.970 19 C -0.081 4.081 20 C -0.144 4.144 21 C -0.162 4.162 22 C -0.090 4.090 23 C -0.100 4.100 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.266 0.734 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.946 -12.319 -4.901 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.049 4.049 3 C 0.306 3.694 4 O -0.413 6.413 5 O -0.238 6.238 6 C 0.014 3.986 7 C -0.018 4.018 8 C -0.540 4.540 9 H 0.103 0.897 10 C -0.124 4.124 11 N -0.526 5.526 12 Si 0.683 3.317 13 H -0.198 1.198 14 H -0.182 1.182 15 H -0.212 1.212 16 C -0.027 4.027 17 O -0.317 6.317 18 C -0.047 4.047 19 C -0.118 4.118 20 C -0.162 4.162 21 C -0.180 4.180 22 C -0.127 4.127 23 C -0.137 4.137 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.216 -11.987 -5.137 14.046 hybrid contribution -0.049 0.809 -0.863 1.184 sum 5.167 -11.178 -6.000 13.698 Atomic orbital electron populations 1.21911 0.91282 1.03318 1.03560 1.20515 0.98167 0.88206 0.98041 1.23577 0.76507 0.88730 0.80548 1.90595 1.38290 1.76473 1.35903 1.86538 1.74061 1.22730 1.40423 1.23302 0.97944 0.77292 1.00014 1.21394 0.98385 0.91018 0.91011 1.20660 0.89556 1.16086 1.27664 0.89716 1.24922 0.94886 0.96944 0.95633 1.69870 1.03974 1.36880 1.41913 0.87420 0.78621 0.82451 0.83222 1.19794 1.18249 1.21229 1.24004 0.91071 0.89010 0.98641 1.89527 1.28553 1.36800 1.76821 1.24303 0.85416 0.96935 0.98011 1.20497 1.01595 0.92419 0.97298 1.22007 1.00405 0.95783 0.98000 1.22032 1.01959 0.99456 0.94599 1.20497 1.01369 0.95170 0.95617 1.21546 1.00544 0.95069 0.96565 0.92244 0.90879 0.90276 0.91315 0.92893 0.92394 0.89958 0.90840 0.91026 0.89303 0.90484 0.88943 0.87513 0.87947 0.90403 0.90879 0.90554 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.69 37.16 0.29 -1.69 16 2 C -0.05 -0.69 0.73 -155.44 -0.11 -0.80 16 3 C 0.46 8.64 6.54 36.01 0.24 8.87 16 4 O -0.52 -10.82 15.53 -18.75 -0.29 -11.11 16 5 O -0.32 -6.71 9.71 -39.25 -0.38 -7.09 16 6 C 0.09 1.94 4.54 37.16 0.17 2.11 16 7 C -0.02 -0.39 0.48 -154.58 -0.07 -0.46 16 8 C -0.50 -13.13 8.70 -34.44 -0.30 -13.43 16 9 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 10 C 0.08 2.14 5.43 -17.82 -0.10 2.04 16 11 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 12 Si 0.85 20.16 23.79 -169.99 -4.04 16.12 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.26 -5.78 4.47 56.52 0.25 -5.52 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C 0.05 1.01 8.36 37.64 0.31 1.32 16 17 O -0.40 -8.54 12.38 -35.23 -0.44 -8.98 16 18 C 0.03 0.65 5.62 37.64 0.21 0.86 16 19 C -0.08 -1.03 4.76 -28.18 -0.13 -1.17 16 20 C -0.14 -1.52 9.35 -35.90 -0.34 -1.86 16 21 C -0.16 -1.59 9.15 -35.90 -0.33 -1.92 16 22 C -0.09 -0.88 5.49 -28.18 -0.15 -1.04 16 23 C -0.10 -1.25 4.37 -26.52 -0.12 -1.37 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.85 5.92 -51.93 -0.31 0.54 16 26 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.07 1.59 5.59 -51.93 -0.29 1.30 16 28 H 0.05 1.13 7.91 -51.93 -0.41 0.72 16 29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 31 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 32 H 0.07 1.48 6.33 -51.93 -0.33 1.15 16 33 H 0.09 1.94 7.47 -51.93 -0.39 1.55 16 34 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.09 1.23 8.12 -51.92 -0.42 0.81 16 36 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.08 0.72 7.05 -51.93 -0.37 0.36 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.01 7.83 -51.93 -0.41 0.60 16 41 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -29.58 320.74 -6.40 -35.98 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.42 Total: 3.69 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.44 Total: -8.52 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.77 Total: -24.92 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -1.11 Total: -27.18 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.04 Total: 16.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.58 -6.40 -35.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123060156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.056 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds