Wall clock time and date at job start Tue Mar 31 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.64161 * 2 1 4 4 O 1.20822 * 119.99996 * 244.62009 * 3 2 1 5 5 O 1.34227 * 119.99853 * 64.61691 * 3 2 1 6 6 C 1.45203 * 116.99656 * 185.17301 * 5 3 2 7 7 C 1.53000 * 109.46921 * 184.82587 * 6 5 3 8 8 C 1.50697 * 113.00215 * 303.65136 * 7 6 5 9 9 H 1.08001 * 120.00175 * 95.27258 * 8 7 6 10 10 C 1.37879 * 120.00016 * 275.27599 * 8 7 6 11 11 N 1.31517 * 120.00245 * 186.07502 * 10 8 7 12 12 Si 1.86804 * 119.99831 * 6.07517 * 10 8 7 13 13 H 1.48506 * 109.47099 * 266.33692 * 12 10 8 14 14 H 1.48498 * 109.47404 * 26.33917 * 12 10 8 15 15 H 1.48505 * 109.46985 * 146.34067 * 12 10 8 16 16 C 1.54036 * 113.81691 * 75.47865 * 7 6 5 17 17 O 1.44444 * 85.42694 * 91.80576 * 16 7 6 18 18 C 1.44174 * 93.37831 * 24.08937 * 17 16 7 19 19 C 1.53025 * 109.81378 * 120.52545 * 2 1 3 20 20 C 1.50068 * 110.14916 * 70.35237 * 19 2 1 21 21 C 1.29447 * 124.07034 * 17.13180 * 20 19 2 22 22 C 1.50068 * 124.07868 * 359.52827 * 21 20 19 23 23 C 1.53021 * 110.14503 * 17.13186 * 22 21 20 24 24 H 1.08997 * 109.46725 * 65.57138 * 1 2 3 25 25 H 1.08995 * 109.46996 * 185.56866 * 1 2 3 26 26 H 1.08996 * 109.46945 * 305.57264 * 1 2 3 27 27 H 1.08999 * 109.47198 * 64.82654 * 6 5 3 28 28 H 1.09002 * 109.46750 * 304.82449 * 6 5 3 29 29 H 0.96997 * 119.99801 * 179.97438 * 11 10 8 30 30 H 1.08997 * 113.86518 * 205.91294 * 16 7 6 31 31 H 1.09006 * 113.86380 * 337.61706 * 16 7 6 32 32 H 1.09004 * 113.86569 * 221.76448 * 18 17 16 33 33 H 1.09003 * 113.98624 * 90.07694 * 18 17 16 34 34 H 1.08997 * 109.35721 * 190.56158 * 19 2 1 35 35 H 1.09007 * 109.35853 * 310.14248 * 19 2 1 36 36 H 1.07991 * 117.96534 * 197.15303 * 20 19 2 37 37 H 1.08002 * 117.95768 * 179.51313 * 21 20 19 38 38 H 1.09000 * 109.35762 * 256.92505 * 22 21 20 39 39 H 1.09004 * 109.24285 * 137.27239 * 22 21 20 40 40 H 1.08998 * 109.64385 * 190.87449 * 23 22 21 41 41 H 1.09004 * 109.63974 * 70.24624 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4193 0.0000 4 8 2.6620 1.8375 -0.9454 5 8 1.7929 2.2189 1.0502 6 6 2.2091 3.6051 0.9339 7 6 1.9607 4.3252 2.2608 8 6 0.5270 4.2405 2.7174 9 1 0.2265 3.4711 3.4132 10 6 -0.4010 5.1451 2.2468 11 7 -1.6226 5.1476 2.7339 12 14 0.0770 6.3673 0.9173 13 1 0.5140 7.6388 1.5477 14 1 1.1893 5.8083 0.1077 15 1 -1.0926 6.6263 0.0395 16 6 2.9845 3.9781 3.3581 17 8 3.7214 5.1206 2.8703 18 6 2.5479 5.7482 2.3157 19 6 2.0487 -0.7312 1.2401 20 6 1.7783 -2.2027 1.1234 21 6 1.4897 -2.8012 0.0125 22 6 1.3754 -2.1055 -1.3123 23 6 2.0457 -0.7316 -1.2457 24 1 -0.3633 0.4250 -0.9357 25 1 -0.3633 -1.0228 0.0997 26 1 -0.3633 0.5978 0.8359 27 1 1.6367 4.0913 0.1439 28 1 3.2710 3.6464 0.6913 29 1 -2.2753 5.7843 2.4030 30 1 2.6027 4.0996 4.3718 31 1 3.4914 3.0256 3.2029 32 1 2.7093 6.1968 1.3354 33 1 2.0311 6.4121 3.0087 34 1 3.1223 -0.5675 1.3335 35 1 1.5474 -0.3408 2.1259 36 1 1.8271 -2.7994 2.0222 37 1 1.3210 -3.8676 0.0407 38 1 0.3225 -1.9820 -1.5658 39 1 1.8630 -2.7088 -2.0781 40 1 1.7947 -0.1577 -2.1377 41 1 3.1266 -0.8542 -1.1773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123060156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:17 Heat of formation + Delta-G solvation = -103.741819 kcal Electronic energy + Delta-G solvation = -23123.845841 eV Core-core repulsion = 19776.698776 eV Total energy + Delta-G solvation = -3347.147065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08217 -41.29980 -39.49345 -37.42295 -34.95339 -33.47920 -32.33375 -31.73828 -28.16816 -27.75357 -27.53348 -26.10900 -24.70539 -23.84661 -21.20010 -20.69976 -19.03060 -18.58524 -18.12912 -17.92702 -17.53452 -17.16060 -16.65466 -16.22175 -16.00183 -15.44495 -15.32518 -14.93449 -14.74904 -14.66218 -14.21907 -13.86229 -13.77011 -13.43702 -13.16479 -13.00720 -12.87608 -12.74575 -12.68290 -12.59690 -12.18380 -11.98952 -11.76944 -11.68480 -11.37745 -11.11925 -11.03008 -10.93856 -10.85290 -10.44707 -9.84784 -8.33778 -6.37415 1.12442 1.24528 1.30300 1.34576 1.45527 1.69451 2.25329 2.82983 3.00898 3.36549 3.53299 3.68337 3.78206 3.97643 4.02707 4.15610 4.21389 4.31994 4.32784 4.38181 4.41926 4.49993 4.53331 4.63287 4.67658 4.71779 4.83267 4.89314 4.95547 5.00906 5.08193 5.13110 5.19124 5.21601 5.25618 5.34797 5.50172 5.56442 5.79876 6.08431 6.22667 6.65016 6.74482 7.26410 8.82203 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.005485 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.752291 B = 5103.284693 C = 5425.217673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C 0.458 3.542 4 O -0.545 6.545 5 O -0.335 6.335 6 C 0.092 3.908 7 C -0.029 4.029 8 C -0.496 4.496 9 H 0.049 0.951 10 C 0.030 3.970 11 N -0.936 5.936 12 Si 0.903 3.097 13 H -0.254 1.254 14 H -0.241 1.241 15 H -0.292 1.292 16 C 0.056 3.944 17 O -0.398 6.398 18 C 0.032 3.968 19 C -0.079 4.079 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.088 4.088 23 C -0.097 4.097 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.267 0.733 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.989 -13.636 -5.975 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.048 4.048 3 C 0.303 3.697 4 O -0.436 6.436 5 O -0.250 6.250 6 C 0.018 3.982 7 C -0.030 4.030 8 C -0.533 4.533 9 H 0.067 0.933 10 C -0.168 4.168 11 N -0.575 5.575 12 Si 0.728 3.272 13 H -0.178 1.178 14 H -0.165 1.165 15 H -0.219 1.219 16 C -0.020 4.020 17 O -0.317 6.317 18 C -0.045 4.045 19 C -0.116 4.116 20 C -0.176 4.176 21 C -0.171 4.171 22 C -0.125 4.125 23 C -0.135 4.135 24 H 0.077 0.923 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.286 -13.314 -6.205 15.977 hybrid contribution -0.376 1.135 -0.506 1.299 sum 5.909 -12.179 -6.711 15.109 Atomic orbital electron populations 1.21888 0.90839 1.04438 1.02399 1.20709 0.98385 0.85615 1.00088 1.24548 0.75761 0.89900 0.79520 1.90570 1.39384 1.77152 1.36463 1.86565 1.74406 1.22368 1.41696 1.23102 0.98091 0.78083 0.98913 1.21488 0.96617 0.92590 0.92264 1.20729 0.91558 1.14609 1.26447 0.93319 1.25607 0.94681 0.98934 0.97624 1.70000 1.05294 1.38352 1.43832 0.86613 0.78660 0.81032 0.80849 1.17823 1.16478 1.21853 1.24041 0.90173 0.89702 0.98086 1.89524 1.28373 1.36971 1.76865 1.24304 0.85214 0.96180 0.98793 1.20456 1.01163 0.94131 0.95836 1.21995 1.02005 0.94241 0.99334 1.22261 1.00252 1.00665 0.93880 1.20556 1.01856 0.93499 0.96559 1.21560 1.00569 0.96446 0.94905 0.92269 0.88228 0.92878 0.92641 0.92097 0.92385 0.89576 0.88892 0.89513 0.89455 0.90864 0.90185 0.85865 0.85386 0.89425 0.88689 0.91523 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 7.69 71.98 0.55 -3.19 16 2 C -0.05 -1.32 0.73 -52.79 -0.04 -1.36 16 3 C 0.46 17.11 6.54 71.24 0.47 17.58 16 4 O -0.54 -22.49 15.53 21.98 0.34 -22.15 16 5 O -0.34 -14.08 9.71 -51.38 -0.50 -14.57 16 6 C 0.09 4.01 4.54 71.98 0.33 4.34 16 7 C -0.03 -1.28 0.48 -52.23 -0.03 -1.30 16 8 C -0.50 -26.41 8.70 25.60 0.22 -26.19 16 9 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 10 C 0.03 1.66 5.43 84.65 0.46 2.12 16 11 N -0.94 -55.47 13.96 21.45 0.30 -55.17 16 12 Si 0.90 41.17 23.79 68.60 1.63 42.80 16 13 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 14 H -0.24 -10.23 4.47 99.48 0.44 -9.79 16 15 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 16 C 0.06 2.24 8.36 72.30 0.60 2.84 16 17 O -0.40 -16.33 12.38 -148.98 -1.84 -18.17 16 18 C 0.03 1.33 5.62 72.30 0.41 1.73 16 19 C -0.08 -1.95 4.76 29.66 0.14 -1.81 16 20 C -0.16 -2.96 9.35 27.03 0.25 -2.71 16 21 C -0.15 -2.45 9.15 27.03 0.25 -2.20 16 22 C -0.09 -1.45 5.49 29.66 0.16 -1.29 16 23 C -0.10 -2.29 4.37 30.73 0.13 -2.16 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.10 2.13 5.92 -2.39 -0.01 2.11 16 26 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 27 H 0.06 2.54 5.59 -2.39 -0.01 2.52 16 28 H 0.06 2.54 7.91 -2.39 -0.02 2.52 16 29 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.09 3.35 8.09 -2.39 -0.02 3.33 16 31 H 0.09 3.32 8.10 -2.38 -0.02 3.30 16 32 H 0.09 3.36 6.33 -2.38 -0.02 3.34 16 33 H 0.09 3.67 7.47 -2.39 -0.02 3.65 16 34 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.08 2.14 8.12 -2.38 -0.02 2.12 16 36 H 0.12 1.92 8.06 -2.92 -0.02 1.89 16 37 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.09 1.32 7.05 -2.39 -0.02 1.31 16 39 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.07 1.69 7.83 -2.39 -0.02 1.67 16 41 H 0.07 1.59 8.12 -2.38 -0.02 1.57 16 Total: -1.00 -64.08 320.74 4.59 -59.49 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.75 Total: 21.36 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 3.91 Total: -13.59 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.30 Total: -55.17 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -2.00 Total: -54.90 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.63 Total: 42.80 kcal Total: -64.08 4.59 -59.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123060156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.256 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds