Wall clock time and date at job start Tue Mar 31 2020 01:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.64402 * 2 1 4 4 O 1.20827 * 119.99675 * 125.49244 * 3 2 1 5 5 O 1.34225 * 120.00266 * 305.49324 * 3 2 1 6 6 C 1.45199 * 117.00052 * 185.20575 * 5 3 2 7 7 C 1.53005 * 109.46907 * 184.80051 * 6 5 3 8 8 C 1.50704 * 112.99736 * 304.70496 * 7 6 5 9 9 H 1.08002 * 119.99175 * 125.10122 * 8 7 6 10 10 C 1.37878 * 120.00440 * 305.38193 * 8 7 6 11 11 N 1.31506 * 120.00160 * 174.10352 * 10 8 7 12 12 Si 1.86800 * 119.99833 * 354.09821 * 10 8 7 13 13 H 1.48503 * 109.47121 * 93.99739 * 12 10 8 14 14 H 1.48496 * 109.47127 * 214.00004 * 12 10 8 15 15 H 1.48505 * 109.47023 * 334.00101 * 12 10 8 16 16 C 1.54029 * 113.82104 * 76.53704 * 7 6 5 17 17 O 1.44451 * 85.42578 * 91.80925 * 16 7 6 18 18 C 1.44178 * 93.37803 * 24.08846 * 17 16 7 19 19 C 1.53022 * 109.81396 * 239.47221 * 2 1 3 20 20 C 1.50072 * 110.14808 * 289.64886 * 19 2 1 21 21 C 1.29438 * 124.07466 * 342.87230 * 20 19 2 22 22 C 1.50063 * 124.07604 * 0.46451 * 21 20 19 23 23 C 1.53016 * 110.14854 * 342.87036 * 22 21 20 24 24 H 1.09001 * 109.47447 * 59.99418 * 1 2 3 25 25 H 1.08999 * 109.47447 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46931 * 299.99966 * 1 2 3 27 27 H 1.09000 * 109.47682 * 64.79876 * 6 5 3 28 28 H 1.08999 * 109.47044 * 304.79332 * 6 5 3 29 29 H 0.96996 * 120.00189 * 179.97438 * 11 10 8 30 30 H 1.09001 * 113.86695 * 205.91455 * 16 7 6 31 31 H 1.08996 * 113.86494 * 337.62049 * 16 7 6 32 32 H 1.08999 * 113.86083 * 221.76602 * 18 17 16 33 33 H 1.08998 * 113.86046 * 90.06187 * 18 17 16 34 34 H 1.08999 * 109.36016 * 49.85578 * 19 2 1 35 35 H 1.09001 * 109.36079 * 169.44141 * 19 2 1 36 36 H 1.08004 * 117.96303 * 162.89071 * 20 19 2 37 37 H 1.07999 * 117.96203 * 180.44077 * 21 20 19 38 38 H 1.09007 * 109.35981 * 222.65966 * 22 21 20 39 39 H 1.09004 * 109.24661 * 103.01256 * 22 21 20 40 40 H 1.08997 * 109.64563 * 289.75050 * 23 22 21 41 41 H 1.09001 * 109.64696 * 169.11755 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4192 0.0000 4 8 2.8118 1.7839 0.8520 5 8 1.6266 2.2782 -0.9464 6 6 2.2426 3.5930 -0.9548 7 6 1.5694 4.4648 -2.0168 8 6 1.5884 3.8415 -3.3888 9 1 0.6653 3.7053 -3.9327 10 6 2.7833 3.4399 -3.9472 11 7 2.7895 2.7919 -5.0915 12 14 4.3935 3.8163 -3.0782 13 1 4.7824 2.6586 -2.2332 14 1 5.4529 4.0706 -4.0873 15 1 4.2253 5.0188 -2.2232 16 6 0.1883 5.0020 -1.5967 17 8 0.9131 6.1511 -1.1057 18 6 2.0268 5.9356 -1.9956 19 6 2.0486 -0.7313 -1.2401 20 6 1.7782 -2.2028 -1.1233 21 6 1.4895 -2.8012 -0.0125 22 6 1.3752 -2.1055 1.3123 23 6 2.0456 -0.7317 1.2457 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.3038 3.4957 -1.1839 28 1 2.1233 4.0564 0.0245 29 1 3.6302 2.5097 -5.4845 30 1 -0.4727 5.2227 -2.4348 31 1 -0.2935 4.4157 -0.8143 32 1 3.0000 6.0881 -1.5289 33 1 1.9284 6.4419 -2.9558 34 1 1.5474 -0.3410 -2.1258 35 1 3.1222 -0.5676 -1.3334 36 1 1.8277 -2.7997 -2.0221 37 1 1.3201 -3.8674 -0.0408 38 1 1.8611 -2.7079 2.0799 39 1 0.3217 -1.9818 1.5634 40 1 3.1265 -0.8543 1.1775 41 1 1.7945 -0.1578 2.1377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123060157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:21 Heat of formation + Delta-G solvation = -82.215805 kcal Electronic energy + Delta-G solvation = -23345.531066 eV Core-core repulsion = 19999.317439 eV Total energy + Delta-G solvation = -3346.213627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62392 -39.61445 -38.25282 -35.82819 -32.99230 -32.38878 -30.87227 -30.41304 -27.08051 -25.85155 -25.82197 -24.28885 -23.55857 -22.70000 -19.88610 -18.78553 -17.36268 -17.22824 -16.96045 -16.31602 -16.03264 -15.40435 -15.07565 -14.79744 -14.53059 -14.31395 -13.78047 -13.51083 -13.36214 -13.09885 -12.70303 -12.61743 -12.33828 -12.11383 -11.81840 -11.75347 -11.59440 -11.21054 -10.92566 -10.86880 -10.71350 -10.66573 -10.33469 -10.26817 -9.93463 -9.74821 -9.26556 -9.13873 -8.98438 -8.79494 -8.56169 -6.24662 -4.24046 2.29476 2.63624 3.12811 3.16092 3.18992 3.26752 4.23466 4.54528 4.60027 4.69514 4.85274 4.97740 5.13152 5.16451 5.27133 5.31825 5.45513 5.52912 5.66381 5.68204 5.76006 5.86925 5.88079 5.93821 5.98664 6.05784 6.12698 6.13540 6.15658 6.22621 6.24209 6.35148 6.41721 6.64077 6.68718 6.92602 6.95654 6.97123 7.11925 7.49252 8.26266 8.33909 8.78292 9.37181 10.87808 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.006363 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.180152 B = 4399.372062 C = 4960.764604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.462 3.538 4 O -0.523 6.523 5 O -0.317 6.317 6 C 0.089 3.911 7 C -0.018 4.018 8 C -0.501 4.501 9 H 0.084 0.916 10 C 0.084 3.916 11 N -0.886 5.886 12 Si 0.854 3.146 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.252 1.252 16 C 0.052 3.948 17 O -0.404 6.404 18 C 0.033 3.967 19 C -0.084 4.084 20 C -0.138 4.138 21 C -0.167 4.167 22 C -0.088 4.088 23 C -0.099 4.099 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.266 0.734 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -8.280 9.211 12.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 C 0.305 3.695 4 O -0.413 6.413 5 O -0.231 6.231 6 C 0.016 3.984 7 C -0.020 4.020 8 C -0.539 4.539 9 H 0.102 0.898 10 C -0.119 4.119 11 N -0.523 5.523 12 Si 0.684 3.316 13 H -0.206 1.206 14 H -0.215 1.215 15 H -0.177 1.177 16 C -0.025 4.025 17 O -0.323 6.323 18 C -0.044 4.044 19 C -0.121 4.121 20 C -0.156 4.156 21 C -0.185 4.185 22 C -0.125 4.125 23 C -0.137 4.137 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.854 -8.022 9.478 12.741 hybrid contribution 1.331 -0.003 0.195 1.345 sum -1.523 -8.024 9.674 12.661 Atomic orbital electron populations 1.21905 0.91605 1.03093 1.03297 1.20505 0.98134 0.88054 0.98202 1.23633 0.78460 0.88499 0.78865 1.90593 1.33988 1.78678 1.38045 1.86592 1.61227 1.24804 1.50512 1.23108 0.96237 0.79877 0.99202 1.21384 0.92711 0.91956 0.95911 1.20694 0.95545 1.40097 0.97522 0.89842 1.24874 0.98532 0.93805 0.94695 1.69872 1.26958 1.37157 1.18288 0.87454 0.84683 0.79871 0.79608 1.20601 1.21467 1.17739 1.23952 0.95745 0.85384 0.97420 1.89515 1.34137 1.51261 1.57404 1.24597 0.89922 0.96402 0.93483 1.20518 1.01944 0.92425 0.97204 1.22019 0.99794 0.95718 0.98063 1.21999 1.02584 0.99428 0.94502 1.20491 1.01191 0.95146 0.95677 1.21538 1.00831 0.95073 0.96256 0.90520 0.90911 0.92379 0.92655 0.92245 0.92429 0.90243 0.90809 0.90737 0.89562 0.88506 0.90451 0.87398 0.87930 0.90894 0.90492 0.91035 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.72 37.16 0.29 -1.58 16 2 C -0.05 -0.73 0.73 -155.45 -0.11 -0.84 16 3 C 0.46 9.07 6.55 36.00 0.24 9.30 16 4 O -0.52 -11.27 15.62 -18.75 -0.29 -11.56 16 5 O -0.32 -6.88 9.61 -39.24 -0.38 -7.25 16 6 C 0.09 2.01 4.23 37.16 0.16 2.17 16 7 C -0.02 -0.42 0.49 -154.58 -0.08 -0.50 16 8 C -0.50 -13.09 8.65 -34.44 -0.30 -13.39 16 9 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 10 C 0.08 2.29 5.44 -17.82 -0.10 2.19 16 11 N -0.89 -25.52 13.96 55.43 0.77 -24.74 16 12 Si 0.85 20.65 24.01 -169.99 -4.08 16.56 16 13 H -0.28 -6.92 7.00 56.52 0.40 -6.52 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.25 -5.62 4.53 56.52 0.26 -5.37 16 16 C 0.05 1.05 8.36 37.64 0.31 1.36 16 17 O -0.40 -8.60 12.38 -35.23 -0.44 -9.04 16 18 C 0.03 0.70 6.93 37.64 0.26 0.96 16 19 C -0.08 -1.27 4.87 -28.18 -0.14 -1.41 16 20 C -0.14 -1.68 9.41 -35.90 -0.34 -2.02 16 21 C -0.17 -1.79 9.16 -35.90 -0.33 -2.12 16 22 C -0.09 -0.91 5.48 -28.18 -0.15 -1.06 16 23 C -0.10 -1.32 4.28 -26.52 -0.11 -1.43 16 24 H 0.08 1.09 8.03 -51.93 -0.42 0.68 16 25 H 0.07 0.81 5.71 -51.93 -0.30 0.52 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.32 3.61 -51.93 -0.19 1.13 16 28 H 0.06 1.29 7.91 -51.93 -0.41 0.87 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 31 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.07 1.53 6.40 -51.93 -0.33 1.20 16 33 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 34 H 0.10 1.59 8.12 -51.93 -0.42 1.17 16 35 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.10 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.71 6.92 -51.93 -0.36 0.35 16 40 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 41 H 0.07 0.98 7.99 -51.93 -0.41 0.56 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -29.72 320.46 -6.33 -36.05 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.34 Total: 3.51 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.40 Total: -8.36 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.77 Total: -24.74 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -1.11 Total: -27.85 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.08 Total: 16.56 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.72 -6.33 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123060157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.165 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds